Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20manginecans_20[genbank_20GCA_5F000712455.1_202014-06- 26] 980 sequences; 31,706,104 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq105 104 2e-17 seq100 89.7 5e-13 seq28 89.7 5e-13 >seq105 Length=86313 Score = 104 bits (114), Expect = 2e-17 Identities = 332/505 (66%), Gaps = 25/505 (5%) Strand=Plus/Plus Query 52344 AAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCGACACCG---CCACGCTGGCCGAGCGC 52400 ||||| | ||||| ||||||||||| | ||||| | | ||| | ||| ||||| Sbjct 44404 AAGGCCGACTGGGCTCTGAAGTGGATC---ACCGACAAGGAGTCGACGTTTGCCCAGCGC 44460 Query 52401 ATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCTTTGCCGCCATCTTT 52460 | || ||||| || ||||||||| | ||||| || ||| ||| ||| ||||||| Sbjct 44461 CTAGTTGCCTTTGCTGCTGTCGAGGGCATCTTTTTCTCAGGCGCCTTCGCCTCCATCTTC 44520 Query 52461 TACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACGAGTTGATATCGCGC 52520 | | | | || | ||||| || ||||| ||| |||||| | || || || Sbjct 44521 TGGCTCCGCAAGCGTGGTCTCATGCCTGGTCTGACCTTCTCAAACGAGCTTATTTCTCGT 44580 Query 52521 GACGAAGGACTGCACACGGACTTTGCGTGCCT-CTACTACAAGACGCGCGTGACCGAAAA 52579 || || || |||||||| |||||||| ||||| || | | ||| | | ||| | Sbjct 44581 GATGAGGGCCTGCACACCGACTTTGCTTGCCTGCTGTT------CTCGCAT--CTGAACA 44632 Query 52580 ATTGGATTCGGACACGATCCTGAGC-----ATGTTCAAGGAGGCGGTGGCTATCGAAAAG 52634 | | | | | || | || || || ||| || || || | ||||| ||| Sbjct 44633 A-CCGCCCCAGCAAGGACCTTGTGCAAAAGATCATCACTGATGCCGTCGTGATCGAGAAG 44691 Query 52635 GAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACGCGCAGTCCATGTGC 52694 ||||| | || | || ||||| || ||||| || |||||||| | ||| Sbjct 44692 GAGTTCCTGACCGAGGCTCTGCCCTGCGGTCTGCTAGGAATGAACGCTGATCTGATGAAG 44751 Query 52695 GAGTACATCGAGTTTGTGGCGGATCGTCTG-TTGGTGCAGCTCGGGCAGCCA-AAGTACT 52752 ||||||| |||||||| || || || ||| ||| ||| || |||| | | ||| | Sbjct 44752 CAGTACATTGAGTTTGTTGCTGACCGCCTGCTTGTTGC-TCT-AGGCAACGAGAAGGTGT 44809 Query 52753 TCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGGCAAGACCAACT 52812 | || || || || || || ||| | ||||| ||||| | |||||||| |||| Sbjct 44810 ACCGTGCCACAAACCCCTTCGACTTCATGGAGAACATCTCGCTCGGCGGCAAGACTAACT 44869 Query 52813 TTTTCGAGAAGCGAGTCGGCGAGTA 52837 | || |||||||| |||||||| || Sbjct 44870 TCTTTGAGAAGCGTGTCGGCGACTA 44894 >seq100 Length=89839 Score = 89.7 bits (98), Expect = 5e-13 Identities = 137/192 (71%), Gaps = 4/192 (2%) Strand=Plus/Minus Query 138425 CCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGA 138484 |||| |||||||||||||| || ||||| ||||| || || || || | ||| Sbjct 17211 CCTTCTGAATGTTGTAGTCAGACAGGGTACGGCCATCCTCCAGCTGCTTGCCAGCGAAGA 17152 Query 138485 TTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG--TTTTAATTG 138542 | || ||||| |||||||| || || || || ||||| ||| | || | || |||| Sbjct 17151 TCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTC-CTGAATCTTGGACTTGACATTG 17093 Query 138543 TTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTAC 138602 || | ||||| | ||||| ||||||| || | ||| ||||| || || || || || Sbjct 17092 -TCGATAGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTAAGGGTCTTGAC 17034 Query 138603 AAAAATCTGCAT 138614 ||||||||||| Sbjct 17033 GAAAATCTGCAT 17022 >seq28 Length=151797 Score = 89.7 bits (98), Expect = 5e-13 Identities = 146/207 (71%), Gaps = 4/207 (2%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| || | |||| ||| | | |||||||| ||||||||||||||| | Sbjct 108264 CCACCACGCAGGCGGAGCACTAGATGGAGAGTAGACTCCTTCTGAATGTTGTAGTCGGAC 108205 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || ||||| || || || || | |||| |||||||| ||||||||||| Sbjct 108204 AGGGTGCGGCCATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGG 108145 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCA 138565 ||||| || ||||| || | || | |||| ||| || | || || | ||||||| Sbjct 108144 ATACCCTCCTTGTC-CTGGATCTTAGACTTAACGTTG-TCAATAGTATCCGAGGACTCCA 108087 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCA 138592 |||||| || | || || ||||||| Sbjct 108086 CCTCGAGGGTGATGGTCTTGCCAGTCA 108060 Score = 82.4 bits (90), Expect = 8e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || |||| ||||| ||| || || | | |||||||| || |||||||||||| Sbjct 109005 GCCACCACGCAGACGCAGAACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGGA 108946 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | || || ||||| || || || || | |||| |||||||| ||||| ||||| Sbjct 108945 GAGGGTGCGGCCATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCGGGAGG 108886 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCA 138565 ||||| || || || ||| || || | |||| || | ||| || | ||||| | Sbjct 108885 GATACCCTCCTTATCCTGGATCTTGGACTTGACATTG-TCAATGGTATCAGAGGACTCGA 108827 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 | |||| || | || || || |||| || || || || || ||||| Sbjct 108826 CTTCGAGGGTAATGGTCTTGCCCGTCAAGGTCTTGACGAAGATTTGCAT 108778 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496256320785600