Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20manginecans_20[genbank_20GCA_5F000712455.1_202014-06-
26] 980 sequences; 31,706,104 total letters
Query= NC_011345.1
Length=155122
Score E
Sequences producing significant alignments: (Bits) Value
seq105 104 2e-17
seq100 89.7 5e-13
seq28 89.7 5e-13
>seq105
Length=86313
Score = 104 bits (114), Expect = 2e-17
Identities = 332/505 (66%), Gaps = 25/505 (5%)
Strand=Plus/Plus
Query 52344 AAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCGACACCG---CCACGCTGGCCGAGCGC 52400
||||| | ||||| ||||||||||| | ||||| | | ||| | ||| |||||
Sbjct 44404 AAGGCCGACTGGGCTCTGAAGTGGATC---ACCGACAAGGAGTCGACGTTTGCCCAGCGC 44460
Query 52401 ATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCTTTGCCGCCATCTTT 52460
| || ||||| || ||||||||| | ||||| || ||| ||| ||| |||||||
Sbjct 44461 CTAGTTGCCTTTGCTGCTGTCGAGGGCATCTTTTTCTCAGGCGCCTTCGCCTCCATCTTC 44520
Query 52461 TACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACGAGTTGATATCGCGC 52520
| | | | || | ||||| || ||||| ||| |||||| | || || ||
Sbjct 44521 TGGCTCCGCAAGCGTGGTCTCATGCCTGGTCTGACCTTCTCAAACGAGCTTATTTCTCGT 44580
Query 52521 GACGAAGGACTGCACACGGACTTTGCGTGCCT-CTACTACAAGACGCGCGTGACCGAAAA 52579
|| || || |||||||| |||||||| ||||| || | | ||| | | ||| |
Sbjct 44581 GATGAGGGCCTGCACACCGACTTTGCTTGCCTGCTGTT------CTCGCAT--CTGAACA 44632
Query 52580 ATTGGATTCGGACACGATCCTGAGC-----ATGTTCAAGGAGGCGGTGGCTATCGAAAAG 52634
| | | | | || | || || || ||| || || || | ||||| |||
Sbjct 44633 A-CCGCCCCAGCAAGGACCTTGTGCAAAAGATCATCACTGATGCCGTCGTGATCGAGAAG 44691
Query 52635 GAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACGCGCAGTCCATGTGC 52694
||||| | || | || ||||| || ||||| || |||||||| | |||
Sbjct 44692 GAGTTCCTGACCGAGGCTCTGCCCTGCGGTCTGCTAGGAATGAACGCTGATCTGATGAAG 44751
Query 52695 GAGTACATCGAGTTTGTGGCGGATCGTCTG-TTGGTGCAGCTCGGGCAGCCA-AAGTACT 52752
||||||| |||||||| || || || ||| ||| ||| || |||| | | ||| |
Sbjct 44752 CAGTACATTGAGTTTGTTGCTGACCGCCTGCTTGTTGC-TCT-AGGCAACGAGAAGGTGT 44809
Query 52753 TCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGGCAAGACCAACT 52812
| || || || || || || ||| | ||||| ||||| | |||||||| ||||
Sbjct 44810 ACCGTGCCACAAACCCCTTCGACTTCATGGAGAACATCTCGCTCGGCGGCAAGACTAACT 44869
Query 52813 TTTTCGAGAAGCGAGTCGGCGAGTA 52837
| || |||||||| |||||||| ||
Sbjct 44870 TCTTTGAGAAGCGTGTCGGCGACTA 44894
>seq100
Length=89839
Score = 89.7 bits (98), Expect = 5e-13
Identities = 137/192 (71%), Gaps = 4/192 (2%)
Strand=Plus/Minus
Query 138425 CCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGA 138484
|||| |||||||||||||| || ||||| ||||| || || || || | |||
Sbjct 17211 CCTTCTGAATGTTGTAGTCAGACAGGGTACGGCCATCCTCCAGCTGCTTGCCAGCGAAGA 17152
Query 138485 TTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG--TTTTAATTG 138542
| || ||||| |||||||| || || || || ||||| ||| | || | || ||||
Sbjct 17151 TCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTC-CTGAATCTTGGACTTGACATTG 17093
Query 138543 TTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTAC 138602
|| | ||||| | ||||| ||||||| || | ||| ||||| || || || || ||
Sbjct 17092 -TCGATAGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTAAGGGTCTTGAC 17034
Query 138603 AAAAATCTGCAT 138614
|||||||||||
Sbjct 17033 GAAAATCTGCAT 17022
>seq28
Length=151797
Score = 89.7 bits (98), Expect = 5e-13
Identities = 146/207 (71%), Gaps = 4/207 (2%)
Strand=Plus/Minus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
|| || |||| || | |||| ||| | | |||||||| ||||||||||||||| |
Sbjct 108264 CCACCACGCAGGCGGAGCACTAGATGGAGAGTAGACTCCTTCTGAATGTTGTAGTCGGAC 108205
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| || || ||||| || || || || | |||| |||||||| |||||||||||
Sbjct 108204 AGGGTGCGGCCATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGG 108145
Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCA 138565
||||| || ||||| || | || | |||| ||| || | || || | |||||||
Sbjct 108144 ATACCCTCCTTGTC-CTGGATCTTAGACTTAACGTTG-TCAATAGTATCCGAGGACTCCA 108087
Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCA 138592
|||||| || | || || |||||||
Sbjct 108086 CCTCGAGGGTGATGGTCTTGCCAGTCA 108060
Score = 82.4 bits (90), Expect = 8e-11
Identities = 157/229 (69%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446
||| || |||| ||||| ||| || || | | |||||||| || ||||||||||||
Sbjct 109005 GCCACCACGCAGACGCAGAACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGGA 108946
Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506
| || || ||||| || || || || | |||| |||||||| ||||| |||||
Sbjct 108945 GAGGGTGCGGCCATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCGGGAGG 108886
Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCA 138565
||||| || || || ||| || || | |||| || | ||| || | ||||| |
Sbjct 108885 GATACCCTCCTTATCCTGGATCTTGGACTTGACATTG-TCAATGGTATCAGAGGACTCGA 108827
Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
| |||| || | || || || |||| || || || || || |||||
Sbjct 108826 CTTCGAGGGTAATGGTCTTGCCCGTCAAGGTCTTGACGAAGATTTGCAT 108778
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496256320785600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |