Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20manginecans_20[genbank_20GCA_5F000712455.1_202014-06- 26] 980 sequences; 31,706,104 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq105 125 7e-24 seq28 125 7e-24 seq61 111 1e-19 seq100 100 3e-16 >seq105 Length=86313 Score = 125 bits (138), Expect = 7e-24 Identities = 162/224 (72%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 47355 GAAGCCGTCGCCATTGAGATGGAGTTTTTCGCCGAGGCTCTGCCCGAATCTTTAGTGGGA 47414 || ||||||| || |||| |||||| | |||||||||||||| | | | ||| Sbjct 44671 GATGCCGTCGTGATCGAGAAGGAGTTCCTGACCGAGGCTCTGCCCTGCGGTCTGCTAGGA 44730 Query 47415 ATGAACGCGGAGATGATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTTCAG 47474 |||||||| || |||||| ||||||| || ||||| || ||||||||||| ||| Sbjct 44731 ATGAACGCTGATCTGATGAAGCAGTACATTGAGTTTGTTGCTGACCGCCTGCTTGTTGCT 44790 Query 47475 CTAAAGTATCCCAAGATTTACCACACCGAGAATCCATTCGAGTTTATGAACAACATTTCG 47534 ||| | ||| | |||| || || || ||||| || ||| | ||||| ||| Sbjct 44791 CTAGGCAACGAGAAGGTGTACCGTGCCACAAACCCCTTCGACTTCATGGAGAACATCTCG 44850 Query 47535 CTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGGCGAATA 47578 |||| |||||||| ||||| || |||||||| |||||||| || Sbjct 44851 CTCGGCGGCAAGACTAACTTCTTTGAGAAGCGTGTCGGCGACTA 44894 >seq28 Length=151797 Score = 125 bits (138), Expect = 7e-24 Identities = 160/218 (73%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | |||| ||||| || | ||||| ||||| ||||| ||||| ||| Sbjct 108548 CCACCACGCAGACGCAGGACCAAGTGAAGAGTAGATTCTTTCTGAATGTTGTAGTCGGAA 108489 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || ||| || ||||| ||||||||| |||| | |||||||| || ||||| Sbjct 108488 AGGGTACGGCCATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGA 108429 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||||||||||||| ||| || ||||| ||||| | | |||||| | |||||| Sbjct 108428 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGT-CAATGGTGTCGGAGGACTCGAC 108370 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAA 127103 ||||| ||| | || || ||||| || || || |||| Sbjct 108369 TTCGAGGGTAATGGTCTTTCCGGTAAGGGTCTTGACAA 108332 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | |||| ||||| || | |||||||| || || || ||||| ||| Sbjct 109004 CCACCACGCAGACGCAGAACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAG 108945 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| ||| || ||||| ||||||||| |||| | |||||||| |||||||| Sbjct 108944 AGGGTGCGGCCATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCGGGAGGG 108885 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || |||||||| ||| ||| || ||||| | || | ||| || | ||||||| Sbjct 108884 ATACCCTCCTTATCCTGGATCTTGGACTTGACATTGTCAATGGTATCAGAGGACTCGACT 108825 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| ||| | || ||||| |||| || || || || || ||||| Sbjct 108824 TCGAGGGTAATGGTCTTGCCCGTCAAGGTCTTGACGAAGATTTGCAT 108778 Score = 104 bits (114), Expect = 2e-17 Identities = 148/206 (72%), Gaps = 2/206 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | ||| | ||| | |||||||| || ||||| ||||| ||| | Sbjct 108264 CCACCACGCAGGCGGAGCACTAGATGGAGAGTAGACTCCTTCTGAATGTTGTAGTCGGAC 108205 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| ||| || ||||| ||||||||| |||| | |||||||| || ||||| Sbjct 108204 AGGGTGCGGCCATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGG 108145 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || |||||||||||| ||| || ||| | |||| || | || |||| ||| || Sbjct 108144 ATACCCTCCTTGTCCTGGATCTTAGACTTAACGTTG-TCAATAGTATCCGAGGACTCCAC 108086 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCA 127091 |||| ||| | || ||||| |||| Sbjct 108085 CTCGAGGGTGATGGTCTTGCCAGTCA 108060 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | |||| ||||| || | ||||| ||||| ||||| ||||| || | Sbjct 108776 CCACCACGCAGACGCAGAACCAAGTGAAGAGTAGATTCTTTCTGAATGTTGTAGTCCGAC 108717 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || ||| || ||||| |||||||| | || | ||||||||||| || || Sbjct 108716 AGGGTACGGCCATCCTCGAGCTGCTTTCCAGCAAAAATGAGACGCTGCTGATCCGGGGGG 108657 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || |||||||| ||| ||| || ||||| | || | ||| || | ||||||| Sbjct 108656 ATACCCTCCTTATCCTGGATCTTGGACTTGACATTGTCAATGGTATCAGAGGACTCGACT 108597 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| ||| | || ||||| |||| || || || || || ||||| Sbjct 108596 TCGAGGGTAATGGTCTTGCCCGTCAAGGTCTTGACGAAGATTTGCAT 108550 >seq61 Length=115161 Score = 111 bits (122), Expect = 1e-19 Identities = 140/190 (74%), Gaps = 2/190 (1%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || ||||| ||| || ||||| ||| || ||||| || ||| Sbjct 22293 GTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTCAAGCTGCTTACCA 22352 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || ||||||| |||||||| || || || ||||||||||||||| ||| || |||| Sbjct 22353 GCAAAGATCAAGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTG 22412 Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | |||| |||| ||||||| | |||||| || | ||| | || || || ||||| || Sbjct 22413 ACGTTG-TCGATCGTGTCCGAAGACTCGACCTCCAGGGTAATGGTCTTACCCGTCAGGGT 22471 Query 127096 TTTTACAAAA 127105 || || ||| Sbjct 22472 CTTGACGAAA 22481 >seq100 Length=89839 Score = 100 bits (110), Expect = 3e-16 Identities = 135/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 126926 TTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985 || ||||| ||||| || || || || ||| || ||||| || |||||| ||||| Sbjct 17209 TTCTGAATGTTGTAGTCAGACAGGGTACGGCCATCCTCCAGCTGCTTGCCAGCGAAGATC 17150 Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCG 127045 | |||||||| || || || ||||||||||||||| || || ||||| | ||| Sbjct 17149 AGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCG 17090 Query 127046 ACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 127105 | ||||||| ||| || |||| ||| | ||| || || || || || || || ||| Sbjct 17089 ATAGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTAAGGGTCTTGACGAAA 17030 Query 127106 ATCTGCAT 127113 |||||||| Sbjct 17029 ATCTGCAT 17022 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475494975115200