Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20manginecans_20[genbank_20GCA_5F000712455.1_202014-06- 26] 980 sequences; 31,706,104 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq116 131 3e-25 >seq116 Length=83673 Score = 131 bits (144), Expect = 3e-25 Identities = 381/579 (66%), Gaps = 6/579 (1%) Strand=Plus/Plus Query 203839 CTTGTCCACCGTGAACTGAATGGCGTTCA-CGGCAGGCCTGCTT-CTCAGATAGTACATG 203896 || ||| || ||||| || || | || || | |||| ||||| | | | ||||||||| Sbjct 75258 CTGGTCTACAGTGAATTGGATAG-GTGCAGCAGCAG-CCTGCGTACGTAAGTAGTACATG 75315 Query 203897 CCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTG 203956 || ||||| || || | ||| || | ||||||| | | |||| || | | Sbjct 75316 CCCGTCTTGAGACCTAGTTTCCAGCCAGCAAAGTGCATGCTGGTGATCTTGCCCATGGTA 75375 Query 203957 GGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTGCG 204016 || || |||||||||||| |||||||| |||||| ||||||| | ||||| || Sbjct 75376 GGATCTTTCATGTGAATGTTTAGAGACTGCGATTGGTCAATGAAAGCACCACGATCAGCA 75435 Query 204017 GCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTGGTG 204076 ||||| | | || || ||| ||||||||||| || |||||| ||| || | | Sbjct 75436 GCCATTTGCACAACTGTACGCTGGGAAATCTCCCAAACGGTCTTGTACAGAGCTTTAATA 75495 Query 204077 TGTTGAGGCACATCTTCCCACGTCCTGA-TCGAGCCGTTGTCGGCCATCAGTCTCATCCT 204135 | ||| | || | || |||| | ||||| ||||| || || | | || | Sbjct 75496 TCAGCAGGAATG-CTAGAGATGTTCTGAATGGAGCCATTGTCCGCAATAATGCGATTCTT 75554 Query 204136 CGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGATGAT 204195 | | | || ||| | || | || || || || | || |||||||| || Sbjct 75555 CATATTGTCAGACCATAAACCAAGATCGACTAGGTCACGTAGGAGCCAGGGGTTGACGAC 75614 Query 204196 CTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACGC 204255 ||| || || || | || || | || | | | |||| ||| | |||||||| Sbjct 75615 CTGGAACTCGCCAGCAAGAACGCGGCGCTGGTAAATGTTGGATGTGTAGGGTTCGAAGCA 75674 Query 204256 CTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGA 204315 ||| |||||||| | |||||| | |||||||| || |||||||| || | || || || Sbjct 75675 CTCATTGTTGCCCAGAATCTGCGACGTGCTGGCTGTAGGCATGGGTGCAACTAGAAGAGA 75734 Query 204316 GTTGCGCACACCGTATTTTTGGACCCTGCGCTTCAGAGAGGTCCAGTCGTGCATCGCACT 204375 ||||| ||||| | | | | | | ||| ||||| |||||||| || |||| Sbjct 75735 ATTGCGTACACCATGCTGCTTAATCTTCTCCTTTAGAGAAGTCCAGTCCCACAGATCACT 75794 Query 204376 GGGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTG 204414 || |||| ||||||| || ||||| ||||||||||| Sbjct 75795 AGGAGTCACATCCCACATATCAAACTGCAAGATGCCTTG 75833 Score = 87.8 bits (96), Expect = 3e-12 Identities = 226/338 (67%), Gaps = 6/338 (2%) Strand=Plus/Plus Query 205060 CTCGTATTTTGTGTACAGCGCCACAAAGTCAGAACCGTACACGTCCATCAGCCCTGGACA 205119 |||||| ||| ||||| ||| |||| || || || ||| || || || || Sbjct 76398 CTCGTACTTTTCATACAGAGCCTCAAACTCTTCGCCATAGCAATCCGCCAAGCCGGGGCA 76457 Query 205120 TTTTTTGGGACACATCAGAGACCACATCTGATCGTCTT-TCACC-CTCTCCATAAACAGG 205177 || ||||| ||||| |||| ||| || || |||| ||| | | || ||| |||| | Sbjct 76458 TTCATTGGGGCACATGAGAGTCCAGTCCTCAT--TCTTCTCAACACGCTTCATGAACAAG 76515 Query 205178 TCGCTGATCCACAGGCCGTAAAACAGATCACGGGCCCTAATTCCGTCGTCTCCAAGGTTC 205237 |||| |||||||||| | | || || ||||| || | | | | || | ||| ||||| Sbjct 76516 TCGCAGATCCACAGGGCCAAGAATAGGTCACGAGCACGGACTTCTTCCTTTCCGTGGTTC 76575 Query 205238 TTTTTCAAGTCCAGCCAAGCCGCA-ATGTCGGCGTGCCACGGCTCTAACCACACGGCCAT 205296 || ||||| || || || | | || || ||||| ||||| | | | ||| | Sbjct 76576 TTGCGTAAGTCGAGG-AACTCGAAGACATCAGCATGCCATGGCTCGAGATAAATGGCAAA 76634 Query 205297 TGCGCCTGGCCTCTTGTTCCCACCCTGGTCCACCATGCGAGTCATCGCGTTGAAAACTCG 205356 || || || | |||||| ||||||||||| || || | | ||||||||| || Sbjct 76635 GGCTCCAGGTCGCTTGTTTCCACCCTGGTCAACATAACGGGCGGTGTTGTTGAAAACACG 76694 Query 205357 CAGCATCGGCACCAGACCGTTGGCGGTCCCGTTCGTGC 205394 ||||| || || | ||||| | || ||||| |||| Sbjct 76695 TAGCATGGGAACGATGCCGTTCGAAGTACCGTTAGTGC 76732 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795145459348800