Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20manginecans_20[genbank_20GCA_5F000712455.1_202014-06-
26] 980 sequences; 31,706,104 total letters
Query= NC_013668.3
Length=248526
Score E
Sequences producing significant alignments: (Bits) Value
seq116 131 3e-25
>seq116
Length=83673
Score = 131 bits (144), Expect = 3e-25
Identities = 381/579 (66%), Gaps = 6/579 (1%)
Strand=Plus/Plus
Query 203839 CTTGTCCACCGTGAACTGAATGGCGTTCA-CGGCAGGCCTGCTT-CTCAGATAGTACATG 203896
|| ||| || ||||| || || | || || | |||| ||||| | | | |||||||||
Sbjct 75258 CTGGTCTACAGTGAATTGGATAG-GTGCAGCAGCAG-CCTGCGTACGTAAGTAGTACATG 75315
Query 203897 CCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTG 203956
|| ||||| || || | ||| || | ||||||| | | |||| || | |
Sbjct 75316 CCCGTCTTGAGACCTAGTTTCCAGCCAGCAAAGTGCATGCTGGTGATCTTGCCCATGGTA 75375
Query 203957 GGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTGCG 204016
|| || |||||||||||| |||||||| |||||| ||||||| | ||||| ||
Sbjct 75376 GGATCTTTCATGTGAATGTTTAGAGACTGCGATTGGTCAATGAAAGCACCACGATCAGCA 75435
Query 204017 GCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTGGTG 204076
||||| | | || || ||| ||||||||||| || |||||| ||| || | |
Sbjct 75436 GCCATTTGCACAACTGTACGCTGGGAAATCTCCCAAACGGTCTTGTACAGAGCTTTAATA 75495
Query 204077 TGTTGAGGCACATCTTCCCACGTCCTGA-TCGAGCCGTTGTCGGCCATCAGTCTCATCCT 204135
| ||| | || | || |||| | ||||| ||||| || || | | || |
Sbjct 75496 TCAGCAGGAATG-CTAGAGATGTTCTGAATGGAGCCATTGTCCGCAATAATGCGATTCTT 75554
Query 204136 CGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGATGAT 204195
| | | || ||| | || | || || || || | || |||||||| ||
Sbjct 75555 CATATTGTCAGACCATAAACCAAGATCGACTAGGTCACGTAGGAGCCAGGGGTTGACGAC 75614
Query 204196 CTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACGC 204255
||| || || || | || || | || | | | |||| ||| | ||||||||
Sbjct 75615 CTGGAACTCGCCAGCAAGAACGCGGCGCTGGTAAATGTTGGATGTGTAGGGTTCGAAGCA 75674
Query 204256 CTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGA 204315
||| |||||||| | |||||| | |||||||| || |||||||| || | || || ||
Sbjct 75675 CTCATTGTTGCCCAGAATCTGCGACGTGCTGGCTGTAGGCATGGGTGCAACTAGAAGAGA 75734
Query 204316 GTTGCGCACACCGTATTTTTGGACCCTGCGCTTCAGAGAGGTCCAGTCGTGCATCGCACT 204375
||||| ||||| | | | | | | ||| ||||| |||||||| || ||||
Sbjct 75735 ATTGCGTACACCATGCTGCTTAATCTTCTCCTTTAGAGAAGTCCAGTCCCACAGATCACT 75794
Query 204376 GGGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTG 204414
|| |||| ||||||| || ||||| |||||||||||
Sbjct 75795 AGGAGTCACATCCCACATATCAAACTGCAAGATGCCTTG 75833
Score = 87.8 bits (96), Expect = 3e-12
Identities = 226/338 (67%), Gaps = 6/338 (2%)
Strand=Plus/Plus
Query 205060 CTCGTATTTTGTGTACAGCGCCACAAAGTCAGAACCGTACACGTCCATCAGCCCTGGACA 205119
|||||| ||| ||||| ||| |||| || || || ||| || || || ||
Sbjct 76398 CTCGTACTTTTCATACAGAGCCTCAAACTCTTCGCCATAGCAATCCGCCAAGCCGGGGCA 76457
Query 205120 TTTTTTGGGACACATCAGAGACCACATCTGATCGTCTT-TCACC-CTCTCCATAAACAGG 205177
|| ||||| ||||| |||| ||| || || |||| ||| | | || ||| |||| |
Sbjct 76458 TTCATTGGGGCACATGAGAGTCCAGTCCTCAT--TCTTCTCAACACGCTTCATGAACAAG 76515
Query 205178 TCGCTGATCCACAGGCCGTAAAACAGATCACGGGCCCTAATTCCGTCGTCTCCAAGGTTC 205237
|||| |||||||||| | | || || ||||| || | | | | || | ||| |||||
Sbjct 76516 TCGCAGATCCACAGGGCCAAGAATAGGTCACGAGCACGGACTTCTTCCTTTCCGTGGTTC 76575
Query 205238 TTTTTCAAGTCCAGCCAAGCCGCA-ATGTCGGCGTGCCACGGCTCTAACCACACGGCCAT 205296
|| ||||| || || || | | || || ||||| ||||| | | | ||| |
Sbjct 76576 TTGCGTAAGTCGAGG-AACTCGAAGACATCAGCATGCCATGGCTCGAGATAAATGGCAAA 76634
Query 205297 TGCGCCTGGCCTCTTGTTCCCACCCTGGTCCACCATGCGAGTCATCGCGTTGAAAACTCG 205356
|| || || | |||||| ||||||||||| || || | | ||||||||| ||
Sbjct 76635 GGCTCCAGGTCGCTTGTTTCCACCCTGGTCAACATAACGGGCGGTGTTGTTGAAAACACG 76694
Query 205357 CAGCATCGGCACCAGACCGTTGGCGGTCCCGTTCGTGC 205394
||||| || || | ||||| | || ||||| ||||
Sbjct 76695 TAGCATGGGAACGATGCCGTTCGAAGTACCGTTAGTGC 76732
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 795145459348800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |