Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20manginecans_20[genbank_20GCA_5F000712455.1_202014-06-
26] 980 sequences; 31,706,104 total letters
Query= NC_013772.1
Length=176677
Score E
Sequences producing significant alignments: (Bits) Value
seq61 127 2e-24
seq28 111 2e-19
seq100 93.3 5e-14
>seq61
Length=115161
Score = 127 bits (140), Expect = 2e-24
Identities = 140/184 (76%), Gaps = 2/184 (1%)
Strand=Plus/Plus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| ||||| ||||||||||| |||||||| | || || |||||||| || || ||
Sbjct 22298 CTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTCAAGCTGCTTACCAGCAAA 22357
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
||||||||||||||||| | || | || |||||||||| |||||| ||||| |||
Sbjct 22358 GATCAAGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGA-CGT 22416
Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580
| | | |||||| || || || |||| || ||||| || |||||||| || || |
Sbjct 22417 TGTCGATCGTGTCCGAAGACTCGACCTCCAGGGTAATGGTCTTACCCGTCAGGGTCTTGA 22476
Query 46581 CAAA 46584
| ||
Sbjct 22477 CGAA 22480
>seq28
Length=151797
Score = 111 bits (122), Expect = 2e-19
Identities = 165/234 (71%), Gaps = 0/234 (0%)
Strand=Plus/Minus
Query 46360 TTATTTGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTA 46419
||| | ||| || | | ||||| |||| || | ||| |||||| ||||| |||||
Sbjct 109011 TTACTGGCCACCACGCAGACGCAGAACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTA 108952
Query 46420 GTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTC 46479
|||||| || ||||| | || || |||||||| || ||||| || | |||||||||||
Sbjct 108951 GTCGGAGAGGGTGCGGCCATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTC 108892
Query 46480 GGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGA 46539
|| || | | |||||| ||| |||||| ||||| | | | || || ||
Sbjct 108891 GGGAGGGATACCCTCCTTATCCTGGATCTTGGACTTGACATTGTCAATGGTATCAGAGGA 108832
Query 46540 TTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
|| || || | || ||||| |||||||||| || || || |||||||||||
Sbjct 108831 CTCGACTTCGAGGGTAATGGTCTTGCCCGTCAAGGTCTTGACGAAGATTTGCAT 108778
Score = 95.1 bits (104), Expect = 1e-14
Identities = 136/189 (72%), Gaps = 2/189 (1%)
Strand=Plus/Minus
Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443
||| ||||| | ||| |||||| || || ||||||||||| || ||||| | || ||
Sbjct 108247 CACTAGATGGAGAGTAGACTCCTTCTGAATGTTGTAGTCGGACAGGGTGCGGCCATCCTC 108188
Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503
|||||||| || ||||| || | ||||||||||| | || | | ||||||||||
Sbjct 108187 AAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGGATACCCTCCTTGTCCTG 108128
Query 46504 GATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTT 46562
|||||| ||| | ||| | | | || || || ||||| || | |||||||| |
Sbjct 108127 GATCTTAGACTT-AACGTTGTCAATAGTATCCGAGGACTCCACCTCGAGGGTGATGGTCT 108069
Query 46563 TGCCCGTCA 46571
|||| ||||
Sbjct 108068 TGCCAGTCA 108060
Score = 87.8 bits (96), Expect = 2e-12
Identities = 130/182 (71%), Gaps = 2/182 (1%)
Strand=Plus/Minus
Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462
|| || || || ||||||||||| || || || | || || |||||||| || |||||
Sbjct 108512 TCTTTCTGAATGTTGTAGTCGGAAAGGGTACGGCCATCCTCAAGCTGCTTTCCAGCGAAG 108453
Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522
|| | ||||||||||| | || | || |||||||||| |||||| ||||| |||
Sbjct 108452 ATGAGACGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGA-CGTT 108394
Query 46523 G-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581
| | | |||||| || || || || | || ||||| || || || || || || ||
Sbjct 108393 GTCAATGGTGTCGGAGGACTCGACTTCGAGGGTAATGGTCTTTCCGGTAAGGGTCTTGAC 108334
Query 46582 AA 46583
||
Sbjct 108333 AA 108332
>seq100
Length=89839
Score = 93.3 bits (102), Expect = 5e-14
Identities = 137/194 (71%), Gaps = 0/194 (0%)
Strand=Plus/Minus
Query 46404 CCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 46463
|||| || || |||||||| || || || || | || || ||||||||||| ||||| |
Sbjct 17211 CCTTCTGAATGTTGTAGTCAGACAGGGTACGGCCATCCTCCAGCTGCTTGCCAGCGAAGA 17152
Query 46464 TCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG 46523
||| |||||||||||| | || | || |||||||||| ||||| ||||| |
Sbjct 17151 TCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGT 17092
Query 46524 CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAA 46583
| | ||||| || || || || | || || || || ||||| || || || || |
Sbjct 17091 CGATAGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTAAGGGTCTTGACGA 17032
Query 46584 AGATTTGCATTTTG 46597
| || ||||| |||
Sbjct 17031 AAATCTGCATCTTG 17018
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 565231475829600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |