Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20manginecans_20[genbank_20GCA_5F000712455.1_202014-06- 26] 980 sequences; 31,706,104 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq56 190 3e-43 seq108 168 8e-37 seq1 152 7e-32 >seq56 Length=118211 Score = 190 bits (210), Expect = 3e-43 Identities = 281/398 (71%), Gaps = 0/398 (0%) Strand=Plus/Plus Query 7463 TCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCA 7522 || |||||||||| || || || || ||||| | ||||| || |||||||| | ||| Sbjct 38234 TCCTCACCACCCAGATGGGTGTCACCAGCGGTGGACTTGACCTCGAAGATACCGTCCTCA 38293 Query 7523 ATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTA 7582 ||| | | || ||| ||||| || |||||||||||||| || || || || ||||| Sbjct 38294 ATGGTCAGCAGCGAGACATCGAAAGTACCACCACCCAGATCGAAGATCAGGACGTTGCGC 38353 Query 7583 TCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATA 7642 || | || ||||| || |||||||| || || || || || || || || ||||| Sbjct 38354 TCACCCTCGACCTTCTTGTCAAGACCGTAGGCAATGGCAGCAGCAGTGGGCTCGTTAATG 38413 Query 7643 ATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAA 7702 ||||| || ||||||||| ||||| | | || || || || || || || || Sbjct 38414 ATACGCAGGACGTTCAGGCCGGCAATGAGACCAGAGTCCTTGGTAGCCTGACGCTGAGAG 38473 Query 7703 TCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGAT 7762 ||||| |||||||| ||||| || | ||| |||| |||| | | || || || || Sbjct 38474 TCGTTGAAGTAGGCGGGGACAGTAATGACAGCGTTGTTGACATCGGTGCCCAGGTAGGAC 38533 Query 7763 TCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGT 7822 || || | || ||| ||||| |||||||| || || |||||||||| | ||||| Sbjct 38534 TCGGCAGTCTCACGCATCTTGGTCAGAACCATGGAGGAGATCTCTTCAGGGGTGAACTGC 38593 Query 7823 TTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTT 7860 || || ||||| || || || || || || || || || Sbjct 38594 TTGGTCTCACCCTTGAACTCGACCTCGATAATAGGCTT 38631 >seq108 Length=85325 Score = 168 bits (186), Expect = 8e-37 Identities = 255/360 (71%), Gaps = 7/360 (2%) Strand=Plus/Minus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 |||||||| |||||||||| ||| || || || || || || ||| ||||||| ||| Sbjct 22351 TCGAAATCCTCACCACCCAGGTGAGTGTCACCAGCAGTAGCGCGGACCTCAAAGACACCA 22292 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTA-- 7574 | ||||| | | ||||||||||| ||||||||||| || || | | || | Sbjct 22291 CTCTCAATAGACAGAAGAGAAACATCAAAAGTACCACCACCAAGATCGTACACGATGATC 22232 Query 7575 ---CGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTG 7631 || ||| | || ||| || |||| || |||||||| || || || || ||||| | Sbjct 22231 TGGCGCTCG-GTGGT-GTCGTTAGTCTTGTCCAGACCGTAGGCAATGGCAGCGGCCGTAG 22174 Query 7632 GTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTT 7691 | || || | || ||||||| |||||| || |||||||| | ||||| || || || | Sbjct 22173 GCTCGTTGACAACACGAAGAATGTTCAGACCGGCAATAGTACCAGCATCCTTGGTAGCCT 22114 Query 7692 GTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTAC 7751 | || || | ||| || |||||||| ||||| || ||||| |||| ||||| ||| | Sbjct 22113 GACGCTGAGCATCATTGAAGTAGGCAGGGACGGTGACGACGGCGTGAGTGACGGTCTGGC 22054 Query 7752 CGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAG 7811 | || || || || |||| || ||||| ||| |||| ||| | || | ||| |||| Sbjct 22053 CAAGGTAAGACTCGGCGACTTCCTTCATCTTGCCTAGAATCATGGCAGAGACCTCCTCAG 21994 >seq1 Length=283345 Score = 152 bits (168), Expect = 7e-32 Identities = 337/505 (67%), Gaps = 9/505 (2%) Strand=Plus/Minus Query 7304 TCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCC 7363 || || |||||||| || || || ||||| | || ||||| || ||||| || || Sbjct 21271 TCGATCTCAATGGTGGTCTGGGCACCGGAAGAAAGGGTACGCTTGGCACGCTCGCAAGCA 21212 Query 7364 GTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTA 7423 || || | ||| || |||||||| | | | ||| | || ||||| || || | Sbjct 21211 GTGCGGAGACGGCGCAGGGCACGAGCATCAGAGGACAGGTCCTTCTTGGTCTTGCGGGTG 21152 Query 7424 AACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTA 7483 || || | | ||| || || | | ||||| || | |||||||| ||| || Sbjct 21151 AAGTCCTTCTTGCAGTACTCCAGCAGGTTGGTGTCGAAGTCCTGACCACCCAGGTGAGTG 21092 Query 7484 TCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCA 7543 || || ||||| || ||||| |||| ||| || | |||||| | || || ||||| Sbjct 21091 TCACCAGCGGTAGCCTTGACGGTGAAGACACCACCCTGAATGTTCAGCAGGGAGACATCG 21032 Query 7544 AACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCTTATCG 7603 || |||||||||||||| || | || || ||||| || | || | |||| | Sbjct 21031 AAAGTACCACCACCCAGATCGTAGATCAGGACGTTGCGCTCCTTCTC---GGACTTACCA 20975 Query 7604 ------AGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTC 7657 |||||||| || || || || || || || || || || ||||| ||| |||| Sbjct 20974 GCACCCAGACCGTAGGCAATGGCAGCGGCGGTAGGCTCGTTGATGATACGCAGAACGTTC 20915 Query 7658 AGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCC 7717 |||||||| || | | ||||| || || || || || || ||||| |||||||| Sbjct 20914 AGGCCAGCGATGGCACCGGCATCCTTGGTAGCCTGACGCTGGTTGTCGTTGAAGTAGGCA 20855 Query 7718 GGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTC 7777 ||||| || | ||| || | | ||| ||||| ||||| | | || || || || ||| Sbjct 20854 GGGACGGTGATGACAGCCTTCTCGACCTTCTTGCCGAGCTTGGCCTCAGCAATCTCCTTC 20795 Query 7778 ATTTTGGTAAGAACCATCGATGAAA 7802 || || |||||||| || |||| Sbjct 20794 ATCTTCAGCAGAACCATGGAAGAAA 20770 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635125019623200