Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20manginecans_20[genbank_20GCA_5F000712455.1_202014-06-
26] 980 sequences; 31,706,104 total letters
Query= NC_014765.1
Length=198519
Score E
Sequences producing significant alignments: (Bits) Value
seq56 190 3e-43
seq108 168 8e-37
seq1 152 7e-32
>seq56
Length=118211
Score = 190 bits (210), Expect = 3e-43
Identities = 281/398 (71%), Gaps = 0/398 (0%)
Strand=Plus/Plus
Query 7463 TCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCA 7522
|| |||||||||| || || || || ||||| | ||||| || |||||||| | |||
Sbjct 38234 TCCTCACCACCCAGATGGGTGTCACCAGCGGTGGACTTGACCTCGAAGATACCGTCCTCA 38293
Query 7523 ATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTA 7582
||| | | || ||| ||||| || |||||||||||||| || || || || |||||
Sbjct 38294 ATGGTCAGCAGCGAGACATCGAAAGTACCACCACCCAGATCGAAGATCAGGACGTTGCGC 38353
Query 7583 TCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATA 7642
|| | || ||||| || |||||||| || || || || || || || || |||||
Sbjct 38354 TCACCCTCGACCTTCTTGTCAAGACCGTAGGCAATGGCAGCAGCAGTGGGCTCGTTAATG 38413
Query 7643 ATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAA 7702
||||| || ||||||||| ||||| | | || || || || || || || ||
Sbjct 38414 ATACGCAGGACGTTCAGGCCGGCAATGAGACCAGAGTCCTTGGTAGCCTGACGCTGAGAG 38473
Query 7703 TCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGAT 7762
||||| |||||||| ||||| || | ||| |||| |||| | | || || || ||
Sbjct 38474 TCGTTGAAGTAGGCGGGGACAGTAATGACAGCGTTGTTGACATCGGTGCCCAGGTAGGAC 38533
Query 7763 TCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGT 7822
|| || | || ||| ||||| |||||||| || || |||||||||| | |||||
Sbjct 38534 TCGGCAGTCTCACGCATCTTGGTCAGAACCATGGAGGAGATCTCTTCAGGGGTGAACTGC 38593
Query 7823 TTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTT 7860
|| || ||||| || || || || || || || || ||
Sbjct 38594 TTGGTCTCACCCTTGAACTCGACCTCGATAATAGGCTT 38631
>seq108
Length=85325
Score = 168 bits (186), Expect = 8e-37
Identities = 255/360 (71%), Gaps = 7/360 (2%)
Strand=Plus/Minus
Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516
|||||||| |||||||||| ||| || || || || || || ||| ||||||| |||
Sbjct 22351 TCGAAATCCTCACCACCCAGGTGAGTGTCACCAGCAGTAGCGCGGACCTCAAAGACACCA 22292
Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTA-- 7574
| ||||| | | ||||||||||| ||||||||||| || || | | || |
Sbjct 22291 CTCTCAATAGACAGAAGAGAAACATCAAAAGTACCACCACCAAGATCGTACACGATGATC 22232
Query 7575 ---CGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTG 7631
|| ||| | || ||| || |||| || |||||||| || || || || ||||| |
Sbjct 22231 TGGCGCTCG-GTGGT-GTCGTTAGTCTTGTCCAGACCGTAGGCAATGGCAGCGGCCGTAG 22174
Query 7632 GTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTT 7691
| || || | || ||||||| |||||| || |||||||| | ||||| || || || |
Sbjct 22173 GCTCGTTGACAACACGAAGAATGTTCAGACCGGCAATAGTACCAGCATCCTTGGTAGCCT 22114
Query 7692 GTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTAC 7751
| || || | ||| || |||||||| ||||| || ||||| |||| ||||| ||| |
Sbjct 22113 GACGCTGAGCATCATTGAAGTAGGCAGGGACGGTGACGACGGCGTGAGTGACGGTCTGGC 22054
Query 7752 CGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAG 7811
| || || || || |||| || ||||| ||| |||| ||| | || | ||| ||||
Sbjct 22053 CAAGGTAAGACTCGGCGACTTCCTTCATCTTGCCTAGAATCATGGCAGAGACCTCCTCAG 21994
>seq1
Length=283345
Score = 152 bits (168), Expect = 7e-32
Identities = 337/505 (67%), Gaps = 9/505 (2%)
Strand=Plus/Minus
Query 7304 TCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCC 7363
|| || |||||||| || || || ||||| | || ||||| || ||||| || ||
Sbjct 21271 TCGATCTCAATGGTGGTCTGGGCACCGGAAGAAAGGGTACGCTTGGCACGCTCGCAAGCA 21212
Query 7364 GTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTA 7423
|| || | ||| || |||||||| | | | ||| | || ||||| || || |
Sbjct 21211 GTGCGGAGACGGCGCAGGGCACGAGCATCAGAGGACAGGTCCTTCTTGGTCTTGCGGGTG 21152
Query 7424 AACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTA 7483
|| || | | ||| || || | | ||||| || | |||||||| ||| ||
Sbjct 21151 AAGTCCTTCTTGCAGTACTCCAGCAGGTTGGTGTCGAAGTCCTGACCACCCAGGTGAGTG 21092
Query 7484 TCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCA 7543
|| || ||||| || ||||| |||| ||| || | |||||| | || || |||||
Sbjct 21091 TCACCAGCGGTAGCCTTGACGGTGAAGACACCACCCTGAATGTTCAGCAGGGAGACATCG 21032
Query 7544 AACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCTTATCG 7603
|| |||||||||||||| || | || || ||||| || | || | |||| |
Sbjct 21031 AAAGTACCACCACCCAGATCGTAGATCAGGACGTTGCGCTCCTTCTC---GGACTTACCA 20975
Query 7604 ------AGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTC 7657
|||||||| || || || || || || || || || || ||||| ||| ||||
Sbjct 20974 GCACCCAGACCGTAGGCAATGGCAGCGGCGGTAGGCTCGTTGATGATACGCAGAACGTTC 20915
Query 7658 AGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCC 7717
|||||||| || | | ||||| || || || || || || ||||| ||||||||
Sbjct 20914 AGGCCAGCGATGGCACCGGCATCCTTGGTAGCCTGACGCTGGTTGTCGTTGAAGTAGGCA 20855
Query 7718 GGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTC 7777
||||| || | ||| || | | ||| ||||| ||||| | | || || || || |||
Sbjct 20854 GGGACGGTGATGACAGCCTTCTCGACCTTCTTGCCGAGCTTGGCCTCAGCAATCTCCTTC 20795
Query 7778 ATTTTGGTAAGAACCATCGATGAAA 7802
|| || |||||||| || ||||
Sbjct 20794 ATCTTCAGCAGAACCATGGAAGAAA 20770
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 635125019623200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |