Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20manginecans_20[genbank_20GCA_5F000712455.1_202014-06- 26] 980 sequences; 31,706,104 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq88 132 6e-26 >seq88 Length=95151 Score = 132 bits (146), Expect = 6e-26 Identities = 329/496 (66%), Gaps = 5/496 (1%) Strand=Plus/Plus Query 154627 TACAACCTAACGCAGGATCACAGGGTGAGTATGCAGGACTGTTAGCAATCCAAGCATACC 154686 |||| |||||| | || | || || |||| ||| || || || ||||| || | Sbjct 53725 TACAGCCTAACTCTGGTGCCCAAGGAGAGTTTGCTGGTCTTCGTGCTATCCACCGCTATC 53784 Query 154687 ATCAAGGATCAGGAGATGATAAAAGAAATGTATGTTTGATACCAGAGTCAGCACATGGAA 154746 || | | | |||| | ||| | || | |||||||| || | || || ||||||| Sbjct 53785 ATGAGGAAAATGGAGGCAAGAAACGTGATATCTGTTTGATTCCTGTCTCTGCCCATGGAA 53844 Query 154747 CTAATCCTGCTAGTGCTGTCATGGCAGGGATGAAAGTTGTAGGTGTCAAGTGTGAT---G 154803 | || ||||| |||| ||||||||| ||| ||||| | ||||||||||| Sbjct 53845 CCAACCCTGCCTCGGCTGCCATGGCAGGTATGCGTGTTGTTCCTATCAAGTGTGATACCA 53904 Query 154804 ATGATGGTAACATAGACATCAAAGATCTAGAGAAGAA-AGCAATCATGAATACATTTGAA 154862 | ||| ||| | || ||| ||||| ||| || |||| | | || | |||| Sbjct 53905 CTACTGGAAACTTGGATATCGCTGATCTGGAGGCCAAGTGCAA-AAAGCATGCTGATGAA 53963 Query 154863 CTGTCATGTATTATGATTACATACCCATCTACACATGGTGTATTTGAAACTAACATTAGA 154922 || || || ||||| || ||||| ||| |||| | |||||| || || | || Sbjct 53964 CTTGGCTGCATCATGATCACTTACCCTAGTACTTTTGGTATCTTTGAACCTGACGTCCGA 54023 Query 154923 CAGATATGTAAGATCGTTCATGACAATGGTGGTCAGGTATATCTTGATGGAGCAAATCTA 154982 || ||| | | || |||| | ||||| ||||| || | || || || || | Sbjct 54024 AAGGCCTGTGATCTTGTGCATGCTTACGGTGGCCAGGTGTACATGGACGGCGCCAACATG 54083 Query 154983 AATGCACAGGTAGGACTAGCAAAACCATGTGAGTATGGTGCAGATGTATGTCATCTAAAC 155042 ||||| ||| | || || | || ||||| ||| || ||||| || || | ||| Sbjct 54084 AATGCCCAGATTGGTCTTACCTCTCCTGGTGAGATTGGCGCTGATGTGTGCCACTTGAAC 54143 Query 155043 TTACATAAAACATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATAGGT 155102 | ||||| |||||||| ||||| ||||| ||||| || ||||| || |||||||| || Sbjct 54144 CTGCATAAGACATTCTGCATTCCTCATGGCGGTGGTGGCCCTGGTGTCGGTCCTATCTGT 54203 Query 155103 GTAGCAAAACATCTCA 155118 || |||||||||| Sbjct 54204 GTCAAGAAACATCTCA 54219 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579205704643200