Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20manginecans_20[genbank_20GCA_5F000712455.1_202014-06- 26] 980 sequences; 31,706,104 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq88 138 1e-27 >seq88 Length=95151 Score = 138 bits (152), Expect = 1e-27 Identities = 330/496 (67%), Gaps = 5/496 (1%) Strand=Plus/Plus Query 159302 TACAACCTAACGCAGGATCACAGGGTGAGTATGCAGGACTGTTAGCAATCCAAGCATACC 159361 |||| |||||| | || | || || |||| ||| || || || ||||| || | Sbjct 53725 TACAGCCTAACTCTGGTGCCCAAGGAGAGTTTGCTGGTCTTCGTGCTATCCACCGCTATC 53784 Query 159362 ATCAAGGATCAGGAGATGATAAAAGAAATGTATGTTTGATACCAGAGTCAGCACATGGAA 159421 || | | | |||| | ||| | || | |||||||| || | || || ||||||| Sbjct 53785 ATGAGGAAAATGGAGGCAAGAAACGTGATATCTGTTTGATTCCTGTCTCTGCCCATGGAA 53844 Query 159422 CTAATCCTGCATCAGCAGTGATGGCAGGGATGAAAGTTGTAGGTGTCAAGTGTGATGA-- 159479 | || ||||| || || | |||||||| ||| ||||| | ||||||||||| Sbjct 53845 CCAACCCTGCCTCGGCTGCCATGGCAGGTATGCGTGTTGTTCCTATCAAGTGTGATACCA 53904 Query 159480 -TGATGGCAACATAGACATCAAAGATCTAGAGAAGAAA-GCAATCATGAATACATTTGAA 159537 | ||| ||| | || ||| ||||| ||| || |||| | | || | |||| Sbjct 53905 CTACTGGAAACTTGGATATCGCTGATCTGGAGGCCAAGTGCAAAAA-GCATGCTGATGAA 53963 Query 159538 CTGTCATGTATTATGATTACATATCCATCTACACATGGTGTATTTGAAACAAACATCAGA 159597 || || || ||||| || || || ||| |||| | |||||| | || || || Sbjct 53964 CTTGGCTGCATCATGATCACTTACCCTAGTACTTTTGGTATCTTTGAACCTGACGTCCGA 54023 Query 159598 CAGATATGTAAGATTGTTCATGAGAATGGTGGTCAGGTATATCTTGATGGTGCAAATCTA 159657 || ||| | |||| |||| | ||||| ||||| || | || || || || | Sbjct 54024 AAGGCCTGTGATCTTGTGCATGCTTACGGTGGCCAGGTGTACATGGACGGCGCCAACATG 54083 Query 159658 AATGCACAGGTAGGTCTAGCAAAACCATGTGACTATGGTGCAGATGTATGTCATCTAAAC 159717 ||||| ||| | ||||| | || |||| ||| || ||||| || || | ||| Sbjct 54084 AATGCCCAGATTGGTCTTACCTCTCCTGGTGAGATTGGCGCTGATGTGTGCCACTTGAAC 54143 Query 159718 TTACATAAGACATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATTGGT 159777 | |||||||||||||| ||||| ||||| ||||| || ||||| || |||||||| || Sbjct 54144 CTGCATAAGACATTCTGCATTCCTCATGGCGGTGGTGGCCCTGGTGTCGGTCCTATCTGT 54203 Query 159778 GTAGCAAAACATCTCA 159793 || |||||||||| Sbjct 54204 GTCAAGAAACATCTCA 54219 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588043996372800