Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20manginecans_20[genbank_20GCA_5F000712455.1_202014-06- 26] 980 sequences; 31,706,104 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq28 154 3e-32 seq61 145 2e-29 >seq28 Length=151797 Score = 154 bits (170), Expect = 3e-32 Identities = 142/180 (79%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||||||||| || ||||| ||||| ||||| |||| ||| || | ||||| || ||||| Sbjct 108525 GTGAAGAGTAGATTCTTTCTGAATGTTGTAGTCGGAAAGGGTACGGCCATCCTCAAGCTG 108466 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || |||||||| || || || ||||| ||||||||||| || ||||| || || || Sbjct 108465 CTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGGATCTT 108406 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||||||||| ||||||||||| || || ||||| ||||||| |||||||| || Sbjct 108405 GGACTTGACGTTGTCAATGGTGTCGGAGGACTCGACTTCGAGGGTAATGGTCTTTCCGGT 108346 Score = 127 bits (140), Expect = 5e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 194928 CAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATC 194987 || ||| | ||||||||| || ||||| ||||| ||||| || | || || | ||||| Sbjct 108762 CAGAACCAAGTGAAGAGTAGATTCTTTCTGAATGTTGTAGTCCGACAGGGTACGGCCATC 108703 Query 194988 TTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTC 195047 ||||||||||| || || || || || || || || || || || || || || || || Sbjct 108702 CTCGAGCTGCTTTCCAGCAAAAATGAGACGCTGCTGATCCGGGGGGATACCCTCCTTATC 108643 Query 195048 TTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGT 195107 || || || |||||| || |||||||| || || || ||||| ||||||| || Sbjct 108642 CTGGATCTTGGACTTGACATTGTCAATGGTATCAGAGGACTCGACTTCGAGGGTAATGGT 108583 Query 195108 CTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||| || ||||| || || ||||| | |||||| Sbjct 108582 CTTGCCCGTCAAGGTCTTGACGAAGATTTGCAT 108550 >seq61 Length=115161 Score = 145 bits (160), Expect = 2e-29 Identities = 152/200 (76%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 |||||||| || |||||||| || || || ||||| |||| ||||| | ||||| || Sbjct 22281 ACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTCA 22340 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 ||||||||||| || ||||| | || || ||||| || |||||||| || ||||| || Sbjct 22341 AGCTGCTTACCAGCAAAGATCAAGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGG 22400 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||||||||| || || ||||||||| || || || ||||||| ||||| Sbjct 22401 ATCTTGGACTTGACGTTGTCGATCGTGTCCGAAGACTCGACCTCCAGGGTAATGGTCTTA 22460 Query 195112 CCTGTCAAAGTTTTTACGAA 195131 || |||| || || ||||| Sbjct 22461 CCCGTCAGGGTCTTGACGAA 22480 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109467669071660