Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20manginecans_20[genbank_20GCA_5F000712455.1_202014-06- 26] 980 sequences; 31,706,104 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq28 116 2e-21 seq100 102 5e-17 >seq28 Length=151797 Score = 116 bits (128), Expect = 2e-21 Identities = 154/214 (72%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 34769 CAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATC 34828 || ||||||||||| || ||||||||||||||| |||||||| ||| | || |||| Sbjct 108762 CAGAACCAAGTGAAGAGTAGATTCTTTCTGAATGTTGTAGTCCGACAGGGTACGGCCATC 108703 Query 34829 ATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34888 || ||||| ||||| ||||| || || || ||||| || | || | |||||||| || Sbjct 108702 CTCGAGCTGCTTTCCAGCAAAAATGAGACGCTGCTGATCCGGGGGGATACCCTCCTTATC 108643 Query 34889 GCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGT 34948 ||||| ||||| | || | ||| || ||| || |||| ||| ||||| Sbjct 108642 CTGGATCTTGGACTTGACATTGTCAATGGTATCAGAGGACTCGACTTCGAGGGTAATGGT 108583 Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || ||||| | ||||| || ||||| |||||| Sbjct 108582 CTTGCCCGTCAAGGTCTTGACGAAGATTTGCATA 108549 Score = 111 bits (122), Expect = 1e-19 Identities = 144/199 (72%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||||| || ||||||||||||||| ||||| |||||| | || |||| || Sbjct 108530 ACCAAGTGAAGAGTAGATTCTTTCTGAATGTTGTAGTCGGAAAGGGTACGGCCATCCTCA 108471 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| ||||| || || || || || |||||||| | || | ||||||||||| Sbjct 108470 AGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGG 108411 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| |||||| | || | || || ||| || |||| ||| ||||| ||| Sbjct 108410 ATCTTGGACTTGACGTTGTCAATGGTGTCGGAGGACTCGACTTCGAGGGTAATGGTCTTT 108351 Query 34953 CCCGTGAGAGTCTTCACAA 34971 || || || ||||| |||| Sbjct 108350 CCGGTAAGGGTCTTGACAA 108332 Score = 98.7 bits (108), Expect = 6e-16 Identities = 150/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 34769 CAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATC 34828 || ||||||||||| || || ||||| ||||| ||||| || ||| | || |||| Sbjct 108990 CAGAACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATC 108931 Query 34829 ATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34888 || ||||| ||||| || || || || || |||||||| | || | |||||||| || Sbjct 108930 CTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCGGGAGGGATACCCTCCTTATC 108871 Query 34889 GCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGT 34948 ||||| ||||| | || | ||| || ||| || |||| ||| ||||| Sbjct 108870 CTGGATCTTGGACTTGACATTGTCAATGGTATCAGAGGACTCGACTTCGAGGGTAATGGT 108811 Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || ||||| | ||||| || ||||| |||||| Sbjct 108810 CTTGCCCGTCAAGGTCTTGACGAAGATTTGCATA 108777 >seq100 Length=89839 Score = 102 bits (112), Expect = 5e-17 Identities = 141/195 (72%), Gaps = 8/195 (4%) Strand=Plus/Minus Query 34794 TTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATT 34853 ||||||||||| ||||| || ||| | || |||| |||||||| || || || || || Sbjct 17209 TTCTGAATGTTGTAGTCAGACAGGGTACGGCCATCCTCCAGCTGCTTGCCAGCGAAGATC 17150 Query 34854 AGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT 34913 || || |||||||| | || | ||||||||||| |||||| ||||| || | Sbjct 17149 AGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGAATCTTGGACTTGAC--AT--T 17094 Query 34914 ATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 ||||| || || |||||| |||| ||| || || || ||||| || ||||| || Sbjct 17093 GTCGATAGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTAAGGGTCTTGAC 17034 Query 34970 AAAGATCTGCATATT 34984 || |||||||| || Sbjct 17033 GAAAATCTGCATCTT 17019 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324629722657440