Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20manginecans_20[genbank_20GCA_5F000712455.1_202014-06-
26] 980 sequences; 31,706,104 total letters
Query= NC_017940.1
Length=127732
Score E
Sequences producing significant alignments: (Bits) Value
seq3 86.0 5e-12
>seq3
Length=270739
Score = 86.0 bits (94), Expect = 5e-12
Identities = 248/379 (65%), Gaps = 2/379 (1%)
Strand=Plus/Minus
Query 30008 TGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGA 30067
|||||||||| || || ||||| ||| || |||||||| ||| || ||||
Sbjct 145535 TGTGGCACGGTGGCAGCGCCATCTTCTTCAAATCCGCAGGGTTCCAAGCGGTCATAATGA 145476
Query 30068 TGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCC 30127
| |||| || | |||||| || ||| || | | | | ||||||||| || |
Sbjct 145475 TACGCCGATCGTACGGGTTGGTCTTGAGTTTGTGGATGACTTCAGCCAGCTGATCAACAC 145416
Query 30128 CCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGA 30187
| |||| ||||||| | | ||| ||||| ||||||||||| | |||||| |
Sbjct 145415 CTTGACCCGTATAGTCTGTCTTGGCATCCACATACTCGGCTCCGAAATGGCGCCACTGAA 145356
Query 30188 ACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAA 30247
| ||||| || || || || || || |||| | ||| | | ||| || || | ||
Sbjct 145355 AGCCGTATACAGGCCCTAGATCGCCAACTTCACGGTGGCCTAGACCCGCGTTATCAAGAA 145296
Query 30248 AGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGT 30307
| || | || |||||| | ||||||||||| || || |||| ||| | ||
Sbjct 145295 ACTCGCGCGAGCCGTTGCCATCCCAGATCTTGACACCAGCCTCGCTCAGCGGAATTGATG 145236
Query 30308 TTGTG-GACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTC 30366
|||| |||||| | |||||| || ||||| | | || ||| || || |
Sbjct 145235 ATGTGCTACCCTC-AATGAACCATAGTAGCTCGGCGATGATGGCACGTGTGAATACTCGT 145177
Query 30367 TTGGTCGTGAGGAGGGGAA 30385
||||| |||||||| ||||
Sbjct 145176 TTGGTGGTGAGGAGAGGAA 145158
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 408612719573540
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |