Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20manginecans_20[genbank_20GCA_5F000712455.1_202014-06- 26] 980 sequences; 31,706,104 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq88 123 3e-23 >seq88 Length=95151 Score = 123 bits (136), Expect = 3e-23 Identities = 327/496 (66%), Gaps = 5/496 (1%) Strand=Plus/Minus Query 138169 TGAGATGTTTTGCTACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATAC 138228 |||||||||| |||| |||||||| || ||||| || ||||| ||||| ||||| | Sbjct 54219 TGAGATGTTTCTTGACACAGATAGGACCGACACCAGGGCCACCACCGCCATGAGGAATGC 54160 Query 138229 AGAATGTCTTATGTAAATTTAGATGACATACATCTGCACCATAGTCACATGGTTTTGCTA 138288 ||||||||||||| | || | || || ||||| || ||| |||| || | | Sbjct 54159 AGAATGTCTTATGCAGGTTCAAGTGGCACACATCAGCGCCAATCTCACCAGGAGAGGTAA 54100 Query 138289 GACCTACCTGTGCATTTAGATTTGCACCATCGAGATATACCTGACCACCATTGTCATGAA 138348 |||| | ||| ||||| | || || || || | || ||||| ||||| | |||| | Sbjct 54099 GACCAATCTGGGCATTCATGTTGGCGCCGTCCATGTACACCTGGCCACCGTAAGCATGCA 54040 Query 138349 CGATCTTACATATCTGTCTGATGTTTGTTTCAAATACACCATGAGTCGATGGATATGTAA 138408 | | | ||| || || || || | |||||| | |||| ||| || || || | Sbjct 54039 CAAGATCACAGGCCTTTCGGACGTCAGGTTCAAAGATACCAAAAGTACTAGGGTAAGTGA 53980 Query 138409 TCATAATACATGAGAGTTCAAATGTATTCATGATTGC-TTTCTTCTCTAGATCTTTGATG 138467 |||| || || |||||| | || | | |||| || ||| ||||| ||| Sbjct 53979 TCATGATGCAGCCAAGTTCATCAGCATGC-TTTTTGCACTTGGCCTCCAGATCAGCGATA 53921 Query 138468 TCTATGTTGCCATCA---TCATCACACTTGACACCTACAACTTTCATTCCTGCCATGACT 138524 || | ||| ||| | ||||||||||| | ||||| ||| ||||||||| | Sbjct 53920 TCCAAGTTTCCAGTAGTGGTATCACACTTGATAGGAACAACACGCATACCTGCCATGGCA 53861 Query 138525 GCACTAGCAGGATTAGTTCCATGTGCTGACTCTGGTATCAGACATACATTTCTTTTATCA 138584 || ||||| || |||||||| || || | || |||| ||| | || | ||| | Sbjct 53860 GCCGAGGCAGGGTTGGTTCCATGGGCAGAGACAGGAATCAAACAGATATCACGTTTCTTG 53801 Query 138585 TCTCCTGATCCTTGATGATATGCTTGGATTGCTAACAGTCCTGCATACTCACCCTGTGAT 138644 |||| | | | |||||| ||||| || || || ||| |||| || || | Sbjct 53800 CCTCCATTTTCCTCATGATAGCGGTGGATAGCACGAAGACCAGCAAACTCTCCTTGGGCA 53741 Query 138645 CCTGCGTTAGGTTGTA 138660 || | |||||| |||| Sbjct 53740 CCAGAGTTAGGCTGTA 53725 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578991307269600