Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20manginecans_20[genbank_20GCA_5F000712455.1_202014-06- 26] 980 sequences; 31,706,104 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq1 122 3e-22 seq317 89.7 2e-12 seq6 86.0 2e-11 >seq1 Length=283345 Score = 122 bits (134), Expect = 3e-22 Identities = 196/277 (71%), Gaps = 10/277 (4%) Strand=Plus/Plus Query 302572 TCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCT 302631 ||||||| | ||||| || |||||| || || || || ||| | ||| || ||||| Sbjct 49269 TCTTCCAAAGCCTTGACTAGACGACGTTGGATGTAGCCGGTTTCGGCTGTCTTCACAGCA 49328 Query 302632 GTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTA-- 302689 || ||||| ||||| |||||||| |||| |||||||| || | || || ||| Sbjct 49329 GTGTCAATGAGACCTTCACGACCAGCCATGGCATGGAAAAAGAATTCGCTAGGA-GTAAG 49387 Query 302690 GCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGG 302749 ||| | ||| | |||| ||||||| || ||||| || || || |||| ||| ||||| Sbjct 49388 GCCACGCAAGTA-GGAGTTCTCAACAAATCCACGAGCTTCAGGGGAATAATCGTCCTTGG 49446 Query 302750 TAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCT 302809 | || || ||||| |||| || | | || | || ||||||||||| ||||| | | Sbjct 49447 TGAAATGAGGCAGAGTCCGGTATTTGAACCCAAAAGGAATACGCTTTCCTTCAACAATTT 49506 Query 302810 GCTGTC---CCAGGCACGAAATCATCTGCGAAATATT 302843 |||| | |||| || ||||||||||||| || Sbjct 49507 GCTGACCGACCAGAGCCG---TCATCTGCGAAATGTT 49540 >seq317 Length=32422 Score = 89.7 bits (98), Expect = 2e-12 Identities = 118/164 (72%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 251407 ATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGA 251466 || |||||||| | | ||| | || || | | | ||||| || | ||| | | ||| Sbjct 11539 ATCAGACCACAAATCTCACAAATGTGCACTCGGAAGGCATCCGAAACCTCAAACAACCGC 11598 Query 251467 CCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAA 251526 |||| ||| | |||||| || | ||||||||||||||| |||||||| |||||| Sbjct 11599 TCCTTCAAGAACGCTGCTGCACCATGGGCAATCATACAATCACGTTCCATTTCTCCGAAA 11658 Query 251527 CGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGT 251570 || | ||||||||| ||||| | ||| || | ||||| || || Sbjct 11659 CGCAAACCACCATCACGAGCACGACCTTCAACTGGCTGTCGCGT 11702 >seq6 Length=244362 Score = 86.0 bits (94), Expect = 2e-11 Identities = 117/163 (72%), Gaps = 8/163 (5%) Strand=Plus/Plus Query 251482 GATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCG 251541 || || |||| | ||||| ||||||||||||||| ||||| | ||| |||||||| ||| Sbjct 57593 GAGGCTCCGTAGGCAATCAAACAATCACGCTCCATCTCACCCAGACGCAGACCACCCTCG 57652 Query 251542 CGAGCCCTACCCTCGGCAGGCTGACG----AGTGAGATTAACCATAGGACCGATGGAGCG 251597 || | |||||||| | |||||||| |||||| | | ||||| | || || Sbjct 57653 CGCGATCTACCCTCAGTGGGCTGACGGGTCAGTGAGGCTCGC----GGACCCGTTGATCG 57708 Query 251598 GCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAG 251640 || ||| || | ||||| |||||||||||||| ||| Sbjct 57709 CGAGTGCATCTTGTCCTGCACCATGTGCTTGAGACGCTGATAG 57751 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471799119490260