Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20manginecans_20[genbank_20GCA_5F000712455.1_202014-06-
26] 980 sequences; 31,706,104 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq1 122 3e-22
seq317 89.7 2e-12
seq6 86.0 2e-11
>seq1
Length=283345
Score = 122 bits (134), Expect = 3e-22
Identities = 196/277 (71%), Gaps = 10/277 (4%)
Strand=Plus/Plus
Query 302572 TCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCT 302631
||||||| | ||||| || |||||| || || || || ||| | ||| || |||||
Sbjct 49269 TCTTCCAAAGCCTTGACTAGACGACGTTGGATGTAGCCGGTTTCGGCTGTCTTCACAGCA 49328
Query 302632 GTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTA-- 302689
|| ||||| ||||| |||||||| |||| |||||||| || | || || |||
Sbjct 49329 GTGTCAATGAGACCTTCACGACCAGCCATGGCATGGAAAAAGAATTCGCTAGGA-GTAAG 49387
Query 302690 GCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGG 302749
||| | ||| | |||| ||||||| || ||||| || || || |||| ||| |||||
Sbjct 49388 GCCACGCAAGTA-GGAGTTCTCAACAAATCCACGAGCTTCAGGGGAATAATCGTCCTTGG 49446
Query 302750 TAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCT 302809
| || || ||||| |||| || | | || | || ||||||||||| ||||| | |
Sbjct 49447 TGAAATGAGGCAGAGTCCGGTATTTGAACCCAAAAGGAATACGCTTTCCTTCAACAATTT 49506
Query 302810 GCTGTC---CCAGGCACGAAATCATCTGCGAAATATT 302843
|||| | |||| || ||||||||||||| ||
Sbjct 49507 GCTGACCGACCAGAGCCG---TCATCTGCGAAATGTT 49540
>seq317
Length=32422
Score = 89.7 bits (98), Expect = 2e-12
Identities = 118/164 (72%), Gaps = 0/164 (0%)
Strand=Plus/Plus
Query 251407 ATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGA 251466
|| |||||||| | | ||| | || || | | | ||||| || | ||| | | |||
Sbjct 11539 ATCAGACCACAAATCTCACAAATGTGCACTCGGAAGGCATCCGAAACCTCAAACAACCGC 11598
Query 251467 CCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAA 251526
|||| ||| | |||||| || | ||||||||||||||| |||||||| ||||||
Sbjct 11599 TCCTTCAAGAACGCTGCTGCACCATGGGCAATCATACAATCACGTTCCATTTCTCCGAAA 11658
Query 251527 CGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGT 251570
|| | ||||||||| ||||| | ||| || | ||||| || ||
Sbjct 11659 CGCAAACCACCATCACGAGCACGACCTTCAACTGGCTGTCGCGT 11702
>seq6
Length=244362
Score = 86.0 bits (94), Expect = 2e-11
Identities = 117/163 (72%), Gaps = 8/163 (5%)
Strand=Plus/Plus
Query 251482 GATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCG 251541
|| || |||| | ||||| ||||||||||||||| ||||| | ||| |||||||| |||
Sbjct 57593 GAGGCTCCGTAGGCAATCAAACAATCACGCTCCATCTCACCCAGACGCAGACCACCCTCG 57652
Query 251542 CGAGCCCTACCCTCGGCAGGCTGACG----AGTGAGATTAACCATAGGACCGATGGAGCG 251597
|| | |||||||| | |||||||| |||||| | | ||||| | || ||
Sbjct 57653 CGCGATCTACCCTCAGTGGGCTGACGGGTCAGTGAGGCTCGC----GGACCCGTTGATCG 57708
Query 251598 GCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAG 251640
|| ||| || | ||||| |||||||||||||| |||
Sbjct 57709 CGAGTGCATCTTGTCCTGCACCATGTGCTTGAGACGCTGATAG 57751
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1471799119490260
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |