Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20manginecans_20[genbank_20GCA_5F000712455.1_202014-06- 26] 980 sequences; 31,706,104 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq99 150 2e-30 seq124 136 5e-26 seq105 129 7e-24 seq116 107 2e-17 seq74 91.5 2e-12 >seq99 Length=90042 Score = 150 bits (166), Expect = 2e-30 Identities = 270/393 (69%), Gaps = 6/393 (2%) Strand=Plus/Minus Query 18096 CTTTGGCGAGTCGCACGGGGCGGGCGTCGGCTGCATCATCGACGGCGTGCCGCCGTGCAT 18155 |||||| ||||||||||| || ||||||||||||||| ||| | |||||| || | Sbjct 67624 CTTTGGTGAGTCGCACGGCAAGGCCGTCGGCTGCATCATTGACAACCCGCCGCCTGGCCT 67565 Query 18156 GCCACTGGCCGAGGCCGACATCCAGCCTCAGTTGGATCGGCGCCGACCGGGCCAGGGCGC 18215 | || |||| || ||||||||||||||| || ||| || |||| |||||| | | Sbjct 67564 TTCCCTAACCGAAGCTGACATCCAGCCTCAGCTGACTCGCCGGAGACCCGGCCAGAGTTC 67505 Query 18216 ACTTTCCACGCCGCGCAACGAGCCCGATCGCGTCATCATCCAGTCGGGCACGGAGAACGG 18275 || | || |||||||| || || || || | || | ||||||| ||| ||| Sbjct 67504 GATTACAACACCGCGCAATGAAAAGGACCGTGTGACGATTCTGTCGGGCTGCGAGTTCGG 67445 Query 18276 CCTCACGCTCGGCTCGCCCGTCGGCCTCTTTGTGGCCAACCGCGACCAGCGGCCCGTCGA 18335 || ||| || ||| | ||| | | || || ||| |||||||||||| || Sbjct 67444 CCGCACTCTAGGCACTCCCATTGCTCTGAGCGTTAACAATGAAGACCAGCGGCCCCGTGA 67385 Query 18336 CT-----ATTCCGAC-ATGTGCAAGGTGCCGCGGCCCTCACACGCCGACTACACCTACAT 18389 || | | ||| ||| |||| || |||||||| || || || | ||| ||| | Sbjct 67384 CTACGGAAACCAGACTATGGACAAGTACCCCCGGCCCTCGCATGCTGATTTCACGTACCT 67325 Query 18390 GGCCAAGTACGGCATCAAGGCGTCGTCGGGCGGAGGCCGGTCGTCTGCCCGCGAGACCCT 18449 || || ||| |||||||||| ||||| || || |||||| ||| || ||||| | Sbjct 67324 GGAAAAATACAGCATCAAGGCATCGTCAGGAGGCGGCCGGAGTAGTGCACGTGAGACTAT 67265 Query 18450 CATGCGCGTCGCCGCCGGCGCGGTCGCCGAGAA 18482 |||||| || ||||| ||||| || || || Sbjct 67264 TGCGCGCGTGGCTGCCGGTGCGGTGGCTGAAAA 67232 Score = 87.8 bits (96), Expect = 2e-11 Identities = 108/148 (73%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 19052 CATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGCGAGCCGTG 19111 || ||| ||||| || || ||||| ||||||||||| | || || || |||||| Sbjct 66991 CACCGGTGGCACTGTCACTTGCGTTATCCGCAACGTGCCCACGGGTCTTGGTGAGCCGGC 66932 Query 19112 CTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCACCAAGGG 19171 |||||| ||| | |||||| ||| || || || |||||| ||||| ||| ||||| Sbjct 66931 CTTTGATAAGCTGGAGGCCAAGCTGGCTCATGCTATGCTGAGCATCCCCGCCTGCAAGGC 66872 Query 19172 ATTCGAGATTGGCAGCGGGTTTGCGGGT 19199 || ||||||||| || ||||| ||| Sbjct 66871 CTTTGAGATTGGCTCGGGATTTGCCGGT 66844 >seq124 Length=77309 Score = 136 bits (150), Expect = 5e-26 Identities = 95/108 (88%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 ||| ||||||| || || |||||||| ||||||||| |||| |||||| |||| |||||| Sbjct 49781 GCCTCCAACTATCTTGATATCAAGCCCCTGCTCGATGTTGGCTGCAAGACTGTCGCCAAC 49722 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATC 1592293 ||||||||||||||||| ||||| || |||||||||||||| |||||| Sbjct 49721 ATGATCAAGGGCAAGTCTCCCGAAGAAATCCGCAAGACCTTCAACATC 49674 >seq105 Length=86313 Score = 129 bits (142), Expect = 7e-24 Identities = 186/258 (72%), Gaps = 11/258 (4%) Strand=Plus/Minus Query 869210 AAGGCGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCGCAGAAACTGCCC 869269 |||| || || |||||||| || ||||| |||||| ||||||| | ||| ||| Sbjct 44558 AAGGTCAGACCAGGCATGAGACCACGCTTGCGGAGCCAGAAGATGGAGGCGAAGGCGCCT 44499 Query 869270 GAGAAAAAGATGCCCTCGACGGCGGCAAAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGG 869329 |||||||||||||||||||| || |||||| | | || |||| |||||| ||||| Sbjct 44498 GAGAAAAAGATGCCCTCGACAGCAGCAAAGGCAACTAGGCGCTGGGCAAA--CGTCGA-- 44443 Query 869330 CCCTCCTTGT---TGATCCACTTCATCGCCCAGTCGGCCTTTTTCCTCACCGACGGCACC 869386 |||||||| |||||||||||| |||||||||||||| | | | || | Sbjct 44442 --CTCCTTGTCGGTGATCCACTTCAGAGCCCAGTCGGCCTTGCGGCGGATGCAGGGAATA 44385 Query 869387 GTGTCGATGGCGCGAAAGAGGT-GGTCCTTTTCGGCCGGGTCCTTGACATAGGTGTCGAT 869445 ||||| ||||| || |||| || | | | | || ||||||| |||||||| || Sbjct 44384 GTGTCAATGGCATTGAACAGGTATGTGCGCTGC-GAGGGCTCCTTGATGTAGGTGTCAAT 44326 Query 869446 CAGGAGCGAATAGGTCTC 869463 ||| ||||| ||||| || Sbjct 44325 CAGCAGCGAGTAGGTTTC 44308 Score = 111 bits (122), Expect = 2e-18 Identities = 171/244 (70%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| ||| ||||| || ||| ||| || ||||| |||||||| |||||||||| Sbjct 44903 GCCTTCTGGTAGTCGCCGACACGCTTCTCAAAGAAGTTAGTCTTGCCGCCGAGCGAGATG 44844 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810 |||||| | ||| ||||| | | ||| ||| ||| || || | | Sbjct 44843 TTCTCCATGAAGTCGAAGGGGTTTGTGGCACGGTACACCTTCTCGTTGCCTAGAGCAACA 44784 Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870 ||||||||||| || |||||||| |||||||| ||| || | |||||||| || | Sbjct 44783 AGCAGGCGGTCAGCAACAAACTCAATGTACTGCTTCATCAGATCAGCGTTCATTCCTAGC 44724 Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATG 868930 || | ||||| | |||| ||| ||||| ||||||||| ||||||| || |||| Sbjct 44723 AGACCGCAGGGCAGAGCCTCGGTCAGGAACTCCTTCTCGATCACGACGGCATCAGTGATG 44664 Query 868931 ATCT 868934 |||| Sbjct 44663 ATCT 44660 >seq116 Length=83673 Score = 107 bits (118), Expect = 2e-17 Identities = 211/312 (68%), Gaps = 0/312 (0%) Strand=Plus/Plus Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124 |||||| || || || || |||| ||| || || || |||||||| |||| |||||| || Sbjct 76659 CTGGTCAACATAACGGGCGGTGTTGTTGAAAACACGTAGCATGGGAACGATGCCGTTCGA 76718 Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184 ||||| ||||| || | ||| | ||| | ||| || | ||| | | || Sbjct 76719 AGTACCGTTAGTGCCAGCAATGTAAGAGCCAGTGGCACGAATACGGTGAACATTGAGACC 76778 Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244 ||| || || ||| |||||| || | || || ||||| || ||||| |||||||| Sbjct 76779 GATACCACCAGCCATCTTGGAAATCATGGCACAAGTCTTGAGGGTATCGTAAATGCCCTC 76838 Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304 ||| ||| |||||||||| || || || || || || || | || | || || Sbjct 76839 GATGCTGTCATCCTTCATGTCGACTAGGAAACATGAAGACAACTGAGCCTGGGGAGTACC 76898 Query 1630305 GGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGGT 1630364 ||| || |||||||| || | || ||||| |||| | ||||| || |||||| Sbjct 76899 GGCATTAAAGAGCGTAGGTGATGCGTGAGTGAAGAACTTGCTAGACATAAGGTTGTAGGT 76958 Query 1630365 GGCGAGCACGCG 1630376 | ||||| || Sbjct 76959 TTCAAGCACACG 76970 >seq74 Length=106014 Score = 91.5 bits (100), Expect = 2e-12 Identities = 134/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 1574067 GGACGCCACAAGGTGATCATCCTCGACGAGGCCGACTGCCTCACGTCGGCGGCCCAGCAG 1574126 || || |||||| | || ||||||||||| || || | | | || || | |||||||| Sbjct 60232 GGCCGACACAAGCTCATTATCCTCGACGAAGCTGATTCCATGACCTCAGGCGCCCAGCAA 60291 Query 1574127 GCCCTGCGGTCCACCATGGAAAAGCACACCAACACGACGCGCTTTGCCCTGGCGTGCAAC 1574186 ||||| || || ||||| | || ||||||| || ||||| || | || |||||| Sbjct 60292 GCCCTCCGCAGAACTATGGAGATCTACTCCAACACTACACGCTTCGCGTTTGCATGCAAC 60351 Query 1574187 ACGTCGTCGATGGTCATCGAGGCCCTCCAAAGTCGCTGCGCCATTCTGCGCTTTGTGCGC 1574246 ||| | | |||| ||| | ||||| || |||||||||||||||| || ||| Sbjct 60352 CAGTCCAACAAGATCATTGAGCCGCTCCAGTCCCGATGCGCCATTCTGCGCTATGGGCGG 60411 Query 1574247 CTGGGTGACG 1574256 || ||||| Sbjct 60412 CTAACTGACG 60421 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107058776610660