Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20manginecans_20[genbank_20GCA_5F000712455.1_202014-06-
26] 980 sequences; 31,706,104 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq99 150 2e-30
seq124 136 5e-26
seq105 129 7e-24
seq116 107 2e-17
seq74 91.5 2e-12
>seq99
Length=90042
Score = 150 bits (166), Expect = 2e-30
Identities = 270/393 (69%), Gaps = 6/393 (2%)
Strand=Plus/Minus
Query 18096 CTTTGGCGAGTCGCACGGGGCGGGCGTCGGCTGCATCATCGACGGCGTGCCGCCGTGCAT 18155
|||||| ||||||||||| || ||||||||||||||| ||| | |||||| || |
Sbjct 67624 CTTTGGTGAGTCGCACGGCAAGGCCGTCGGCTGCATCATTGACAACCCGCCGCCTGGCCT 67565
Query 18156 GCCACTGGCCGAGGCCGACATCCAGCCTCAGTTGGATCGGCGCCGACCGGGCCAGGGCGC 18215
| || |||| || ||||||||||||||| || ||| || |||| |||||| | |
Sbjct 67564 TTCCCTAACCGAAGCTGACATCCAGCCTCAGCTGACTCGCCGGAGACCCGGCCAGAGTTC 67505
Query 18216 ACTTTCCACGCCGCGCAACGAGCCCGATCGCGTCATCATCCAGTCGGGCACGGAGAACGG 18275
|| | || |||||||| || || || || | || | ||||||| ||| |||
Sbjct 67504 GATTACAACACCGCGCAATGAAAAGGACCGTGTGACGATTCTGTCGGGCTGCGAGTTCGG 67445
Query 18276 CCTCACGCTCGGCTCGCCCGTCGGCCTCTTTGTGGCCAACCGCGACCAGCGGCCCGTCGA 18335
|| ||| || ||| | ||| | | || || ||| |||||||||||| ||
Sbjct 67444 CCGCACTCTAGGCACTCCCATTGCTCTGAGCGTTAACAATGAAGACCAGCGGCCCCGTGA 67385
Query 18336 CT-----ATTCCGAC-ATGTGCAAGGTGCCGCGGCCCTCACACGCCGACTACACCTACAT 18389
|| | | ||| ||| |||| || |||||||| || || || | ||| ||| |
Sbjct 67384 CTACGGAAACCAGACTATGGACAAGTACCCCCGGCCCTCGCATGCTGATTTCACGTACCT 67325
Query 18390 GGCCAAGTACGGCATCAAGGCGTCGTCGGGCGGAGGCCGGTCGTCTGCCCGCGAGACCCT 18449
|| || ||| |||||||||| ||||| || || |||||| ||| || ||||| |
Sbjct 67324 GGAAAAATACAGCATCAAGGCATCGTCAGGAGGCGGCCGGAGTAGTGCACGTGAGACTAT 67265
Query 18450 CATGCGCGTCGCCGCCGGCGCGGTCGCCGAGAA 18482
|||||| || ||||| ||||| || || ||
Sbjct 67264 TGCGCGCGTGGCTGCCGGTGCGGTGGCTGAAAA 67232
Score = 87.8 bits (96), Expect = 2e-11
Identities = 108/148 (73%), Gaps = 0/148 (0%)
Strand=Plus/Minus
Query 19052 CATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGCGAGCCGTG 19111
|| ||| ||||| || || ||||| ||||||||||| | || || || ||||||
Sbjct 66991 CACCGGTGGCACTGTCACTTGCGTTATCCGCAACGTGCCCACGGGTCTTGGTGAGCCGGC 66932
Query 19112 CTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCACCAAGGG 19171
|||||| ||| | |||||| ||| || || || |||||| ||||| ||| |||||
Sbjct 66931 CTTTGATAAGCTGGAGGCCAAGCTGGCTCATGCTATGCTGAGCATCCCCGCCTGCAAGGC 66872
Query 19172 ATTCGAGATTGGCAGCGGGTTTGCGGGT 19199
|| ||||||||| || ||||| |||
Sbjct 66871 CTTTGAGATTGGCTCGGGATTTGCCGGT 66844
>seq124
Length=77309
Score = 136 bits (150), Expect = 5e-26
Identities = 95/108 (88%), Gaps = 0/108 (0%)
Strand=Plus/Minus
Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245
||| ||||||| || || |||||||| ||||||||| |||| |||||| |||| ||||||
Sbjct 49781 GCCTCCAACTATCTTGATATCAAGCCCCTGCTCGATGTTGGCTGCAAGACTGTCGCCAAC 49722
Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATC 1592293
||||||||||||||||| ||||| || |||||||||||||| ||||||
Sbjct 49721 ATGATCAAGGGCAAGTCTCCCGAAGAAATCCGCAAGACCTTCAACATC 49674
>seq105
Length=86313
Score = 129 bits (142), Expect = 7e-24
Identities = 186/258 (72%), Gaps = 11/258 (4%)
Strand=Plus/Minus
Query 869210 AAGGCGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCGCAGAAACTGCCC 869269
|||| || || |||||||| || ||||| |||||| ||||||| | ||| |||
Sbjct 44558 AAGGTCAGACCAGGCATGAGACCACGCTTGCGGAGCCAGAAGATGGAGGCGAAGGCGCCT 44499
Query 869270 GAGAAAAAGATGCCCTCGACGGCGGCAAAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGG 869329
|||||||||||||||||||| || |||||| | | || |||| |||||| |||||
Sbjct 44498 GAGAAAAAGATGCCCTCGACAGCAGCAAAGGCAACTAGGCGCTGGGCAAA--CGTCGA-- 44443
Query 869330 CCCTCCTTGT---TGATCCACTTCATCGCCCAGTCGGCCTTTTTCCTCACCGACGGCACC 869386
|||||||| |||||||||||| |||||||||||||| | | | || |
Sbjct 44442 --CTCCTTGTCGGTGATCCACTTCAGAGCCCAGTCGGCCTTGCGGCGGATGCAGGGAATA 44385
Query 869387 GTGTCGATGGCGCGAAAGAGGT-GGTCCTTTTCGGCCGGGTCCTTGACATAGGTGTCGAT 869445
||||| ||||| || |||| || | | | | || ||||||| |||||||| ||
Sbjct 44384 GTGTCAATGGCATTGAACAGGTATGTGCGCTGC-GAGGGCTCCTTGATGTAGGTGTCAAT 44326
Query 869446 CAGGAGCGAATAGGTCTC 869463
||| ||||| ||||| ||
Sbjct 44325 CAGCAGCGAGTAGGTTTC 44308
Score = 111 bits (122), Expect = 2e-18
Identities = 171/244 (70%), Gaps = 0/244 (0%)
Strand=Plus/Minus
Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750
||||| ||| ||||| || ||| ||| || ||||| |||||||| ||||||||||
Sbjct 44903 GCCTTCTGGTAGTCGCCGACACGCTTCTCAAAGAAGTTAGTCTTGCCGCCGAGCGAGATG 44844
Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810
|||||| | ||| ||||| | | ||| ||| ||| || || | |
Sbjct 44843 TTCTCCATGAAGTCGAAGGGGTTTGTGGCACGGTACACCTTCTCGTTGCCTAGAGCAACA 44784
Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870
||||||||||| || |||||||| |||||||| ||| || | |||||||| || |
Sbjct 44783 AGCAGGCGGTCAGCAACAAACTCAATGTACTGCTTCATCAGATCAGCGTTCATTCCTAGC 44724
Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATG 868930
|| | ||||| | |||| ||| ||||| ||||||||| ||||||| || ||||
Sbjct 44723 AGACCGCAGGGCAGAGCCTCGGTCAGGAACTCCTTCTCGATCACGACGGCATCAGTGATG 44664
Query 868931 ATCT 868934
||||
Sbjct 44663 ATCT 44660
>seq116
Length=83673
Score = 107 bits (118), Expect = 2e-17
Identities = 211/312 (68%), Gaps = 0/312 (0%)
Strand=Plus/Plus
Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124
|||||| || || || || |||| ||| || || || |||||||| |||| |||||| ||
Sbjct 76659 CTGGTCAACATAACGGGCGGTGTTGTTGAAAACACGTAGCATGGGAACGATGCCGTTCGA 76718
Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184
||||| ||||| || | ||| | ||| | ||| || | ||| | | ||
Sbjct 76719 AGTACCGTTAGTGCCAGCAATGTAAGAGCCAGTGGCACGAATACGGTGAACATTGAGACC 76778
Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244
||| || || ||| |||||| || | || || ||||| || ||||| ||||||||
Sbjct 76779 GATACCACCAGCCATCTTGGAAATCATGGCACAAGTCTTGAGGGTATCGTAAATGCCCTC 76838
Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304
||| ||| |||||||||| || || || || || || || | || | || ||
Sbjct 76839 GATGCTGTCATCCTTCATGTCGACTAGGAAACATGAAGACAACTGAGCCTGGGGAGTACC 76898
Query 1630305 GGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGGT 1630364
||| || |||||||| || | || ||||| |||| | ||||| || ||||||
Sbjct 76899 GGCATTAAAGAGCGTAGGTGATGCGTGAGTGAAGAACTTGCTAGACATAAGGTTGTAGGT 76958
Query 1630365 GGCGAGCACGCG 1630376
| ||||| ||
Sbjct 76959 TTCAAGCACACG 76970
>seq74
Length=106014
Score = 91.5 bits (100), Expect = 2e-12
Identities = 134/190 (71%), Gaps = 0/190 (0%)
Strand=Plus/Plus
Query 1574067 GGACGCCACAAGGTGATCATCCTCGACGAGGCCGACTGCCTCACGTCGGCGGCCCAGCAG 1574126
|| || |||||| | || ||||||||||| || || | | | || || | ||||||||
Sbjct 60232 GGCCGACACAAGCTCATTATCCTCGACGAAGCTGATTCCATGACCTCAGGCGCCCAGCAA 60291
Query 1574127 GCCCTGCGGTCCACCATGGAAAAGCACACCAACACGACGCGCTTTGCCCTGGCGTGCAAC 1574186
||||| || || ||||| | || ||||||| || ||||| || | || ||||||
Sbjct 60292 GCCCTCCGCAGAACTATGGAGATCTACTCCAACACTACACGCTTCGCGTTTGCATGCAAC 60351
Query 1574187 ACGTCGTCGATGGTCATCGAGGCCCTCCAAAGTCGCTGCGCCATTCTGCGCTTTGTGCGC 1574246
||| | | |||| ||| | ||||| || |||||||||||||||| || |||
Sbjct 60352 CAGTCCAACAAGATCATTGAGCCGCTCCAGTCCCGATGCGCCATTCTGCGCTATGGGCGG 60411
Query 1574247 CTGGGTGACG 1574256
|| |||||
Sbjct 60412 CTAACTGACG 60421
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6107058776610660
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |