Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20manginecans_20[genbank_20GCA_5F000712455.1_202014-06- 26] 980 sequences; 31,706,104 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq116 134 1e-26 seq100 93.3 4e-14 seq61 86.0 6e-12 >seq116 Length=83673 Score = 134 bits (148), Expect = 1e-26 Identities = 568/890 (64%), Gaps = 39/890 (4%) Strand=Plus/Plus Query 138358 ATCTCCCACACGGTCTTGTATAGATCACGAATATGTCGCGGTATTGTTGCAATATTTTGA 138417 |||||||| ||||||||||| ||| | ||||| || || | | || || ||| Sbjct 75463 ATCTCCCAAACGGTCTTGTACAGAGCTTTAATATCAGCAGGAATGCTAGAGATGTTCTGA 75522 Query 138418 ATGCTCCCGTTGGCCGCAATGATGCGATTTCTCAT---GTCAT-CGTTGTAC--AGATTC 138471 ||| || ||| ||||||| |||||||| |||| |||| | | || |||| | Sbjct 75523 ATGGAGCCATTGTCCGCAATAATGCGATTCTTCATATTGTCAGACCATAAACCAAGAT-C 75581 Query 138472 AACTTGATCAAGTCGTTTATCAGATATCTGTTTATGACCTGAAATTCACCGGCCAATACT 138531 ||| | ||| || | || | ||| | |||||| || || || || | || Sbjct 75582 GACTAGGTCACGTAGG-----AGCCAGGGGTTGACGACCTGGAACTCGCCAGCAAGAACG 75636 Query 138532 CGACGAACGTAAATGTTGTTGGTGAAAGGCTCAAACGATTCGTTGTTTCCCAGAATCTGA 138591 || || |||||||||| ||| | || || || | || ||||| ||||||||||| Sbjct 75637 CGGCGCTGGTAAATGTTGGATGTGTAGGGTTCGAAGCACTCATTGTTGCCCAGAATCTGC 75696 Query 138592 GCCGTGGTCGCGGTCGGCATGTACGCCACCAAAAGAGAATTCCGTAAACCGTGAAGCTTG 138651 | |||| | || || |||||| || || | ||||||||| |||| ||| || |||| Sbjct 75697 GACGTGCTGGCTGTAGGCATGGGTGCAACTAGAAGAGAATTGCGTACACCATGCTGCTTA 75756 Query 138652 ATTCGTTCCTTGAGCGACGACCAGTCCCACAAATCGCTAGGTTTTTTGTTCCACATATCG 138711 || ||||| || || | ||||||||||| ||| ||||| | | ||||||||| Sbjct 75757 ATCTTCTCCTTTAGAGAAGTCCAGTCCCACAGATCACTAGGAGTCACATCCCACATATCA 75816 Query 138712 TACTGTAACATTCCCAAACTTGCGGGACTG-----CCTTCGTACGAATCGTATACACCAA 138766 |||| || || | |||| | ||| | || || || | ||| ||| Sbjct 75817 AACTGCAAGATGC-----CTTGGGAGACAGGAGAACCCTCATAAGTTGAGTAAGTACCCT 75871 Query 138767 ACTCTTGCGCCAACTCGTTGCTCGCCTCGAGCGCACCATAGTAAATAGTTTCGGCAATCT 138826 | || || | || | || || || | | ||| || ||||| ||||| Sbjct 75872 CCGTCTGGGCGATTTCCATTGAAGCAGTTAGTGCGGCGTGGTAGATGGTTTCAAAAATCT 75931 Query 138827 GCTGATTGAGCAATCGGGCCTCGGCGCTCTCGTACGGCATGCGGAGCATCGTGAACGCGT 138886 ||| |||||| || || || | | || | ||||||||||| ||| |||| Sbjct 75932 GCTTGTTGAGCTGGCGTGCTTCAGGGGATTCAAAAGGCATGCGGAGAGCAAGGAAAGCGT 75991 Query 138887 CGGCCAGCCCTTGCACGCCCACTCCGACAGGGCGATGGCGCAGATTTGACGCTTTTGCG- 138945 | ||||| || || || || || || | || || ||||||| || ||| ||| | Sbjct 75992 CAGCCAGGCCCTGTACACCGACACCAATGGGACGGTGGCGCA----TGTTGCTGTTGTGA 76047 Query 138946 GCTTC---GATAGGATAATAGTTTACATCGATGATTTTGTTTAAATTTCGCACGACCACC 139002 ||||| || ||| || | || ||||||||||| ||||| || || || || || Sbjct 76048 GCTTCCTGGACAGGGTAGTGATTCACATCGATGATGCGGTTTAGGTTGCGAACAACAACT 76107 Query 139003 TTAGTCGTATGCTTTAATCGTTCAAAATCGTATGTGCCCCCGTTGTCGTCGACGACGTCG 139062 | || | | || || ||| || || ||| ||||| ||| |||| | | Sbjct 76108 TGGGTGACTTCGTGTAGCTTTTTAAAGTCATACTCACCCTTGTTGTAGTCCACGAAG--G 76165 Query 139063 ACAAATTTGTTGACACAAATCGAGGCTATGTTGCACACCGCCACTTCGTCGGGGTCGCTG 139122 | | | | | || |||| ||||||||| || || || || ||| | | | Sbjct 76166 AAGGAAGGGCT-------AGAGATGCTAGGTTGCACACAGCGACCTCATCAGGGGCACAG 76218 Query 139123 TATTCGACAATTTCGGCACACAAATTACTACACTTGATCGTACCTAAATTTTGTTGATTG 139182 || |||| ||| || | |||| || || || ||||||| ||||| |||||| Sbjct 76219 TACTCGATAATCTCAGTGCACAGGTTCGAACTGCGAATGGTACCTAGATTTTTCTGATTG 76278 Query 139183 CTTTTTCGGTTACAAGCATCTTTGTAAAGCATATACGGTGTGCCAGTTTC 139232 || || ||||| || |||||||| |||||| | || ||||||| || Sbjct 76279 CTCTTGCGGTTGCAGTGGTCTTTGTAGAGCATAAAAGGGTTGCCAGTCTC 76328 >seq100 Length=89839 Score = 93.3 bits (102), Expect = 4e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||| || | || || || || ||||| || ||||| ||||| || || || | Sbjct 17021 GATGCAGATTTTCGTCAAGACCCTTACGGGTAAGACGATTACCCTCGAGGTTGAGTCCTC 17080 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | || || ||||| || ||||| || || || || || || || Sbjct 17081 GGACACTATCGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGCATTCCCCCGGACCA 17140 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || || ||||||| || || || |||||||||||| | | | |||| || || || Sbjct 17141 GCAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGCCGTACCCTGTCTGACTACAA 17200 Query 24883 CATTCAAAAGG 24893 |||||| |||| Sbjct 17201 CATTCAGAAGG 17211 >seq61 Length=115161 Score = 86.0 bits (94), Expect = 6e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24719 AAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACG 24778 || || || || ||||| || ||||| || || || || | | ||||| | || | Sbjct 22474 AAGACCCTGACGGGTAAGACCATTACCCTGGAGGTCGAGTCTTCGGACACGATCGACAAC 22415 Query 24779 GTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTT 24838 || || |||||||| ||||| || || || || || || || || || ||||||||| Sbjct 22414 GTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGCTTGATCTTT 22355 Query 24839 GCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCG 24898 || || || ||||| |||||| | | |||| || || ||||| || ||||| || Sbjct 22354 GCTGGTAAGCAGCTTGAGGATGGCCGCACTCTGTCCGACTACAACATCCAGAAGGAGTCC 22295 Query 24899 ACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || ||| | || |||| |||| || || Sbjct 22294 ACCCTCCACCTTGTCCTGCGCCTGCGTGGTGG 22263 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449892088754400