Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20manginecans_20[genbank_20GCA_5F000712455.1_202014-06- 26] 980 sequences; 31,706,104 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq105 159 5e-33 seq124 123 4e-22 seq116 96.9 5e-14 >seq105 Length=86313 Score = 159 bits (176), Expect = 5e-33 Identities = 215/295 (73%), Gaps = 11/295 (4%) Strand=Plus/Minus Query 794377 AGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAA 794436 || || |||||||| || ||||| |||||| ||||||| ||| ||| |||||| Sbjct 44552 AGACCAGGCATGAGACCACGCTTGCGGAGCCAGAAGATGGAGGCGAAGGCGCCTGAGAAA 44493 Query 794437 AAGATGCCCTCGACGGCGGCAAAGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCT 794496 |||||||||||||| || |||||| | || || |||| |||||| || | | ||| Sbjct 44492 AAGATGCCCTCGACAGCAGCAAAGGCAACTAGGCGCTGGGCAAACGT--CGA----CTCC 44439 Query 794497 TTGT---TGATCCACTTCATCGCCCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCG 794553 |||| |||||||||||| ||||| || ||||| | | |||| | ||||| Sbjct 44438 TTGTCGGTGATCCACTTCAGAGCCCAGTCGGCCTTGCGGCGGATGCAGGGAATAGTGTCA 44379 Query 794554 ATGGCGCGAAAGAGGTG-GTCCTTCTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAG 794612 ||||| || |||| || | ||| || ||||||| ||||||||| || || || Sbjct 44378 ATGGCATTGAACAGGTATGTGCGCTGCGAG-GGCTCCTTGATGTAGGTGTCAATCAGCAG 44320 Query 794613 CGAGTAGGTCTCTGAGTGGATGTTTTCGATGGCGATCTGGAAGCCATAAAAGCAG 794667 ||||||||| || |||||||||||||| || ||||||||| || || |||||| Sbjct 44319 CGAGTAGGTTTCAGAGTGGATGTTTTCCATCATGATCTGGAAACCGTAGAAGCAG 44265 Score = 122 bits (134), Expect = 1e-21 Identities = 168/235 (71%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 793908 TACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATC 793967 || ||||| || ||| ||| || ||||| |||||||| |||||||||| |||||| Sbjct 44894 TAGTCGCCGACACGCTTCTCAAAGAAGTTAGTCTTGCCGCCGAGCGAGATGTTCTCCATG 44835 Query 793968 CACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGAGCGACGCAAGCAGGCGG 794027 | ||| ||||| | | |||| ||||||| || || | ||||||||||| Sbjct 44834 AAGTCGAAGGGGTTTGTGGCACGGTACACCTTCTCGTTGCCTAGAGCAACAAGCAGGCGG 44775 Query 794028 TCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCATGCCGATGAGCGCCACG 794087 || || || || ||||||||||| ||| || | |||||||| || | || | | Sbjct 44774 TCAGCAACAAACTCAATGTACTGCTTCATCAGATCAGCGTTCATTCCTAGCAGACCGCAG 44715 Query 794088 GGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCTCGATGATGATCT 794142 ||||| | |||| | | ||||| ||||||||| ||||||| || ||||||||| Sbjct 44714 GGCAGAGCCTCGGTCAGGAACTCCTTCTCGATCACGACGGCATCAGTGATGATCT 44660 >seq124 Length=77309 Score = 123 bits (136), Expect = 4e-22 Identities = 92/108 (85%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 2035647 GCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAAC 2035706 ||| ||||||| || || ||||||||||| |||||| | || |||||||| || |||||| Sbjct 49781 GCCTCCAACTATCTTGATATCAAGCCCCTGCTCGATGTTGGCTGCAAGACTGTCGCCAAC 49722 Query 2035707 CTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATC 2035754 | |||||||||||||| ||||| || |||||||||||||| |||||| Sbjct 49721 ATGATCAAGGGCAAGTCTCCCGAAGAAATCCGCAAGACCTTCAACATC 49674 >seq116 Length=83673 Score = 96.9 bits (106), Expect = 5e-14 Identities = 176/258 (68%), Gaps = 0/258 (0%) Strand=Plus/Plus Query 2073540 CTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGA 2073599 |||||| ||||| || || |||| ||| || || || |||||||| || | |||||| || Sbjct 76659 CTGGTCAACATAACGGGCGGTGTTGTTGAAAACACGTAGCATGGGAACGATGCCGTTCGA 76718 Query 2073600 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCC 2073659 ||||| ||||| || | ||| | ||| | ||| || | ||| | | || Sbjct 76719 AGTACCGTTAGTGCCAGCAATGTAAGAGCCAGTGGCACGAATACGGTGAACATTGAGACC 76778 Query 2073660 GATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTC 2073719 ||| || || ||| |||||| || | || || | || || || ||||| |||||||| Sbjct 76779 GATACCACCAGCCATCTTGGAAATCATGGCACAAGTCTTGAGGGTATCGTAAATGCCCTC 76838 Query 2073720 GATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCC 2073779 ||| ||| |||||||||| | || || || || || || | | | || || Sbjct 76839 GATGCTGTCATCCTTCATGTCGACTAGGAAACATGAAGACAACTGAGCCTGGGGAGTACC 76898 Query 2073780 GGCATTGAAGAGCGTGGG 2073797 |||||| |||||||| || Sbjct 76899 GGCATTAAAGAGCGTAGG 76916 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916142152930220