Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20manginecans_20[genbank_20GCA_5F000712455.1_202014-06-
26] 980 sequences; 31,706,104 total letters
Query= NC_022646.1
Length=101818
Score E
Sequences producing significant alignments: (Bits) Value
seq28 118 7e-22
seq61 116 2e-21
seq100 114 8e-21
>seq28
Length=151797
Score = 118 bits (130), Expect = 7e-22
Identities = 148/203 (73%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824
|||||||| ||||| || || ||||||||||| ||||| || ||| | || ||||
Sbjct 108534 CAGGACCAAGTGAAGAGTAGATTCTTTCTGAATGTTGTAGTCGGAAAGGGTACGGCCATC 108475
Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884
|| || |||||||| |||||||| || || |||||||| | || | |||||||||||
Sbjct 108474 CTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGAATGCCCTCCTTGTC 108415
Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944
| || || |||||| | || | || || |||||| || | ||| |||||
Sbjct 108414 CTGGATCTTGGACTTGACGTTGTCAATGGTGTCGGAGGACTCGACTTCGAGGGTAATGGT 108355
Query 34945 CTTTCCCGTGAGGGTCTTTACAA 34967
|||||| || |||||||| ||||
Sbjct 108354 CTTTCCGGTAAGGGTCTTGACAA 108332
Score = 105 bits (116), Expect = 4e-18
Identities = 151/213 (71%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824
||| |||| ||||| || || ||||||||||| |||||||| ||| | || ||||
Sbjct 108762 CAGAACCAAGTGAAGAGTAGATTCTTTCTGAATGTTGTAGTCCGACAGGGTACGGCCATC 108703
Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884
|| || |||||||| || || || || || ||||| || | || | |||||||| ||
Sbjct 108702 CTCGAGCTGCTTTCCAGCAAAAATGAGACGCTGCTGATCCGGGGGGATACCCTCCTTATC 108643
Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944
| || || ||||| | || | ||| || |||||| || | ||| |||||
Sbjct 108642 CTGGATCTTGGACTTGACATTGTCAATGGTATCAGAGGACTCGACTTCGAGGGTAATGGT 108583
Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
||| ||||| | |||||| || ||||| |||||
Sbjct 108582 CTTGCCCGTCAAGGTCTTGACGAAGATTTGCAT 108550
Score = 93.3 bits (102), Expect = 3e-14
Identities = 80/99 (81%), Gaps = 0/99 (0%)
Strand=Plus/Minus
Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845
||||||||||||||| ||||| || ||| |||| |||| || || |||||||| |||||
Sbjct 108229 CTCCTTCTGAATGTTGTAGTCGGACAGGGTGCGGCCATCCTCAAGCTGCTTTCCAGCGAA 108170
Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884
||| || || |||||||| | || | |||||||||||
Sbjct 108169 GATGAGACGCTGCTGGTCCGGAGGGATACCCTCCTTGTC 108131
>seq61
Length=115161
Score = 116 bits (128), Expect = 2e-21
Identities = 148/204 (73%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824
|||||| ||||| | |||| ||||||||| ||||| ||||| || || |||| ||||
Sbjct 22277 CAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATC 22336
Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884
|| || ||||| || || ||||||| || |||||||| | || | |||||||||||
Sbjct 22337 CTCAAGCTGCTTACCAGCAAAGATCAAGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTC 22396
Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944
| || || |||||| | |||| || | |||||| || | ||| |||||
Sbjct 22397 CTGGATCTTGGACTTGACGTTGTCGATCGTGTCCGAAGACTCGACCTCCAGGGTAATGGT 22456
Query 34945 CTTTCCCGTGAGGGTCTTTACAAA 34968
||| ||||| |||||||| || ||
Sbjct 22457 CTTACCCGTCAGGGTCTTGACGAA 22480
>seq100
Length=89839
Score = 114 bits (126), Expect = 8e-21
Identities = 143/194 (74%), Gaps = 8/194 (4%)
Strand=Plus/Minus
Query 34788 CCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGA 34847
||||||||||||| ||||| || ||| | || |||| ||||| ||||| || |||||||
Sbjct 17211 CCTTCTGAATGTTGTAGTCAGACAGGGTACGGCCATCCTCCAGCTGCTTGCCAGCGAAGA 17152
Query 34848 TCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATG 34907
|||| || |||||||| | || | ||||||||||| | || || ||||| ||
Sbjct 17151 TCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGAATCTTGGACTTGAC--AT- 17095
Query 34908 CTATCGAT----TCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTT 34963
| ||||| || || ||| || || | ||| || ||||| ||||| ||||||||
Sbjct 17094 -TGTCGATAGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTAAGGGTCTTG 17036
Query 34964 ACAAAGATCTGCAT 34977
|| || ||||||||
Sbjct 17035 ACGAAAATCTGCAT 17022
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 325688910006620
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |