Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20manginecans_20[genbank_20GCA_5F000712455.1_202014-06- 26] 980 sequences; 31,706,104 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq105 226 4e-53 seq116 122 1e-21 >seq105 Length=86313 Score = 226 bits (250), Expect = 4e-53 Identities = 366/512 (71%), Gaps = 22/512 (4%) Strand=Plus/Plus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| ||| | |||||| || ||||||||||||||||| ||||| || |||||| | || | Sbjct 44052 GATCTGGCAGATGTAC-AAGAAGGCCGAGGCCTCCTTCTGGACTGCTGAGGAGATTGATC 44110 Query 1455835 TCGGCGCCGACACGGTCCAC---TGGGTGT--CG-CTGAGCGACGACGAGCGCCATTTCA 1455888 | | | | | ||||| ||| || |||| | | ||||||| | |||| Sbjct 44111 T-GTCTAAGGATC--TCCACGACTGGAACAACCGTCTGAACAAAGACGAGCAGTACTTCA 44167 Query 1455889 TCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCC 1455948 || ||| | || ||||| ||| || ||| ||||||||||| ||| || || | Sbjct 44168 TCTCCCACATTCTTGCCTTCTTT-GCTGCCTCTGATGGCATCGTCAACGAAAATCTCGTT 44226 Query 1455949 GGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATC 1456008 | ||||| ||||| || | || ||||| || | || ||||| ||||||||| Sbjct 44227 GAGCGCTTCTCAGGCGAGGTGCAGATCCCCGAGGCCCGCTGCTTCTACGGTTTCCAGATC 44286 Query 1456009 GCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGAC 1456068 || ||||||||||||||||||||||||||||| ||||| ||||||||| ||||||| Sbjct 44287 ATGATGGAAAACATCCACTCTGAAACCTACTCGCTGCTGATTGACACCTACATCAAGGAG 44346 Query 1456069 CCGGTCGAGAAGGACC-ACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAA 1456127 || ||| | || |||| || ||||| ||||| | || | | | || Sbjct 44347 CCC-TCGCAGCGCACATACCTGTTCAATGCCATTGACACTATTCCCTGCATCCGCCGCAA 44405 Query 1456128 GGCCGACTGGGCGATGAAGTGGATCA---ACAAGGAGGGCCTCGACACTTTGCCGAGCGG 1456184 |||||||||||| |||||||||||| |||||||| ||||| |||||| |||| Sbjct 44406 GGCCGACTGGGCTCTGAAGTGGATCACCGACAAGGAG----TCGACG-TTTGCCCAGCGC 44460 Query 1456185 CTCGTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTT 1456243 || || | |||||| || |||||||||||||||||||| ||| ||| | ||||||| Sbjct 44461 CTAGTTGCCTTTGCTGCTGTCGAGGGCATCTTTTTCTCAGGCGCCTTCGCCTCCATCTTC 44520 Query 1456244 TGGCTCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275 |||||| ||||| || |||||||| ||||| Sbjct 44521 TGGCTCCGCAAGCGTGGTCTCATGCCTGGTCT 44552 Score = 100 bits (110), Expect = 4e-15 Identities = 177/253 (70%), Gaps = 4/253 (2%) Strand=Plus/Plus Query 1456521 AGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGG 1456580 |||||||| || ||||||| ||||||||| ||||| | | |||| | ||||| | Sbjct 44660 AGATCATCACTGATGCCGTCGTGATCGAGAAGGAGTTCCTGACCGAGGCTCTGCCCTGCG 44719 Query 1456581 CGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCG 1456640 || | || |||||||| || ||| ||||||||||| ||| || || ||||| Sbjct 44720 GTCTGCTAGGAATGAACGCTGAT-CTGATGAAGCAGTACATTGAGTTT-GTTGCTGACCG 44777 Query 1456641 CCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGGA 1456700 |||||| | || || ||| | |||||| ||||| | | ||||| ||| | | Sbjct 44778 CCTGCTTGTTGCTCTAGGCAAC-GAGAAGGTGTACCGTGCCACAAACCCCTTCGACTTCA 44836 Query 1456701 TGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCGT-GGCGAGTACG 1456759 ||||| |||||||||| |||||||| ||||| || ||| || || ||||| ||| Sbjct 44837 TGGAGAACATCTCGCTCGGCGGCAAGACTAACTTCTTTGAGAAGCGTGTCGGCGACTACC 44896 Query 1456760 CCAAGGCCGGCGT 1456772 ||||| || || Sbjct 44897 AGAAGGCTGGTGT 44909 >seq116 Length=83673 Score = 122 bits (134), Expect = 1e-21 Identities = 334/504 (66%), Gaps = 21/504 (4%) Strand=Plus/Minus Query 259682 CACAAGGAGGTCCTCGACGCTGCCATCTGCCACGGCCGAGACTTTGGCTACTCGTACTTT 259741 |||||||| | || ||| ||||||| ||| ||| ||||| |||| ||||||| Sbjct 77144 CACAAGGATGAGCTGGACTCTGCCATTGTGTACGACCGTGACTTCAACTACCAGTACTTT 77085 Query 259742 GGTCTGGCGAC-CTTGCGCCGGTCCTACCTGACCAAAGTGCGCGATATTGTCGTCGAGCG 259800 || | ||| || | || | || ||||| |||| | | || | || ||||| Sbjct 77084 GGCTTTAAGACGCTCGAGC-GTTCGTACCTACTCAAACTTGATGGTAAGATTGTTGAGCG 77026 Query 259801 GCCCCAGTATATGCTCATGCGTGTCGCCCTTGGCCATTATGGGTTTGCCGACGTCGACAA 259860 |||||| | ||| | |||||||| || | || ||| |||| ||||| Sbjct 77025 TCCCCAGCACATGATAATGCGTGTTGCTGTGGGT-ATTTGGGGT-----------GACAA 76978 Query 259861 TGCGCTGGAGCACGTGCTCGCCACCTACGAGGCCATGTCGCAGCA-GTTGTTCACCTCA- 259918 | | || | ||||| | |||||| | ||||| |||| ||| ||||| ||| Sbjct 76977 AG---TCGATCGTGTGCTTGAAACCTACAACCTTATGTCT-AGCAAGTTCTTCAC-TCAC 76923 Query 259919 GCGACGCCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTG 259978 || | || ||||||||||||||||| || || | | ||| || || || || || Sbjct 76922 GCATCACCTACGCTCTTTAATGCCGGTACTCCCCAGGCTCAGTTGTCTTCATGTTTCCTA 76863 Query 259979 TTGGACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTC 260038 | |||||||||| || ||||||||||| || || || |||||| || || | Sbjct 76862 GTCGACATGAAGGATGACAGCATCGAGGGCATTTACGATACCCTCAAGACTTGTGCCATG 76803 Query 260039 ATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCGCC 260098 || |||||| ||| || || |||||| | | ||| | || ||| | ||| | Sbjct 76802 ATTTCCAAGATGGCTGGTGGTATCGGTCTCAATGTTCACCGTATTCGTGCCACTGGCTCT 76743 Query 260099 TACGTGGCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAAC 260158 ||| | || ||||| ||||| || |||||| | || |||||||| || ||||| ||| Sbjct 76742 TACATTGCTGGCACTAACGGTACTTCGAACGGCATCGTTCCCATGCTACGTGTTTTCAAC 76683 Query 260159 GACACGGCGCGCTACGTCGACCAG 260182 |||| || || || || |||||| Sbjct 76682 AACACCGCCCGTTATGTTGACCAG 76659 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177716677198760