Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20manginecans_20[genbank_20GCA_5F000712455.1_202014-06-
26] 980 sequences; 31,706,104 total letters
Query= NC_026440.1
Length=2243109
Score E
Sequences producing significant alignments: (Bits) Value
seq105 226 4e-53
seq116 122 1e-21
>seq105
Length=86313
Score = 226 bits (250), Expect = 4e-53
Identities = 366/512 (71%), Gaps = 22/512 (4%)
Strand=Plus/Plus
Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834
||| ||| | |||||| || ||||||||||||||||| ||||| || |||||| | || |
Sbjct 44052 GATCTGGCAGATGTAC-AAGAAGGCCGAGGCCTCCTTCTGGACTGCTGAGGAGATTGATC 44110
Query 1455835 TCGGCGCCGACACGGTCCAC---TGGGTGT--CG-CTGAGCGACGACGAGCGCCATTTCA 1455888
| | | | | ||||| ||| || |||| | | ||||||| | ||||
Sbjct 44111 T-GTCTAAGGATC--TCCACGACTGGAACAACCGTCTGAACAAAGACGAGCAGTACTTCA 44167
Query 1455889 TCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCC 1455948
|| ||| | || ||||| ||| || ||| ||||||||||| ||| || || |
Sbjct 44168 TCTCCCACATTCTTGCCTTCTTT-GCTGCCTCTGATGGCATCGTCAACGAAAATCTCGTT 44226
Query 1455949 GGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATC 1456008
| ||||| ||||| || | || ||||| || | || ||||| |||||||||
Sbjct 44227 GAGCGCTTCTCAGGCGAGGTGCAGATCCCCGAGGCCCGCTGCTTCTACGGTTTCCAGATC 44286
Query 1456009 GCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGAC 1456068
|| ||||||||||||||||||||||||||||| ||||| ||||||||| |||||||
Sbjct 44287 ATGATGGAAAACATCCACTCTGAAACCTACTCGCTGCTGATTGACACCTACATCAAGGAG 44346
Query 1456069 CCGGTCGAGAAGGACC-ACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAA 1456127
|| ||| | || |||| || ||||| ||||| | || | | | ||
Sbjct 44347 CCC-TCGCAGCGCACATACCTGTTCAATGCCATTGACACTATTCCCTGCATCCGCCGCAA 44405
Query 1456128 GGCCGACTGGGCGATGAAGTGGATCA---ACAAGGAGGGCCTCGACACTTTGCCGAGCGG 1456184
|||||||||||| |||||||||||| |||||||| ||||| |||||| ||||
Sbjct 44406 GGCCGACTGGGCTCTGAAGTGGATCACCGACAAGGAG----TCGACG-TTTGCCCAGCGC 44460
Query 1456185 CTCGTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTT 1456243
|| || | |||||| || |||||||||||||||||||| ||| ||| | |||||||
Sbjct 44461 CTAGTTGCCTTTGCTGCTGTCGAGGGCATCTTTTTCTCAGGCGCCTTCGCCTCCATCTTC 44520
Query 1456244 TGGCTCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275
|||||| ||||| || |||||||| |||||
Sbjct 44521 TGGCTCCGCAAGCGTGGTCTCATGCCTGGTCT 44552
Score = 100 bits (110), Expect = 4e-15
Identities = 177/253 (70%), Gaps = 4/253 (2%)
Strand=Plus/Plus
Query 1456521 AGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGG 1456580
|||||||| || ||||||| ||||||||| ||||| | | |||| | ||||| |
Sbjct 44660 AGATCATCACTGATGCCGTCGTGATCGAGAAGGAGTTCCTGACCGAGGCTCTGCCCTGCG 44719
Query 1456581 CGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCG 1456640
|| | || |||||||| || ||| ||||||||||| ||| || || |||||
Sbjct 44720 GTCTGCTAGGAATGAACGCTGAT-CTGATGAAGCAGTACATTGAGTTT-GTTGCTGACCG 44777
Query 1456641 CCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGGA 1456700
|||||| | || || ||| | |||||| ||||| | | ||||| ||| | |
Sbjct 44778 CCTGCTTGTTGCTCTAGGCAAC-GAGAAGGTGTACCGTGCCACAAACCCCTTCGACTTCA 44836
Query 1456701 TGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCGT-GGCGAGTACG 1456759
||||| |||||||||| |||||||| ||||| || ||| || || ||||| |||
Sbjct 44837 TGGAGAACATCTCGCTCGGCGGCAAGACTAACTTCTTTGAGAAGCGTGTCGGCGACTACC 44896
Query 1456760 CCAAGGCCGGCGT 1456772
||||| || ||
Sbjct 44897 AGAAGGCTGGTGT 44909
>seq116
Length=83673
Score = 122 bits (134), Expect = 1e-21
Identities = 334/504 (66%), Gaps = 21/504 (4%)
Strand=Plus/Minus
Query 259682 CACAAGGAGGTCCTCGACGCTGCCATCTGCCACGGCCGAGACTTTGGCTACTCGTACTTT 259741
|||||||| | || ||| ||||||| ||| ||| ||||| |||| |||||||
Sbjct 77144 CACAAGGATGAGCTGGACTCTGCCATTGTGTACGACCGTGACTTCAACTACCAGTACTTT 77085
Query 259742 GGTCTGGCGAC-CTTGCGCCGGTCCTACCTGACCAAAGTGCGCGATATTGTCGTCGAGCG 259800
|| | ||| || | || | || ||||| |||| | | || | || |||||
Sbjct 77084 GGCTTTAAGACGCTCGAGC-GTTCGTACCTACTCAAACTTGATGGTAAGATTGTTGAGCG 77026
Query 259801 GCCCCAGTATATGCTCATGCGTGTCGCCCTTGGCCATTATGGGTTTGCCGACGTCGACAA 259860
|||||| | ||| | |||||||| || | || ||| |||| |||||
Sbjct 77025 TCCCCAGCACATGATAATGCGTGTTGCTGTGGGT-ATTTGGGGT-----------GACAA 76978
Query 259861 TGCGCTGGAGCACGTGCTCGCCACCTACGAGGCCATGTCGCAGCA-GTTGTTCACCTCA- 259918
| | || | ||||| | |||||| | ||||| |||| ||| ||||| |||
Sbjct 76977 AG---TCGATCGTGTGCTTGAAACCTACAACCTTATGTCT-AGCAAGTTCTTCAC-TCAC 76923
Query 259919 GCGACGCCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTG 259978
|| | || ||||||||||||||||| || || | | ||| || || || || ||
Sbjct 76922 GCATCACCTACGCTCTTTAATGCCGGTACTCCCCAGGCTCAGTTGTCTTCATGTTTCCTA 76863
Query 259979 TTGGACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTC 260038
| |||||||||| || ||||||||||| || || || |||||| || || |
Sbjct 76862 GTCGACATGAAGGATGACAGCATCGAGGGCATTTACGATACCCTCAAGACTTGTGCCATG 76803
Query 260039 ATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCGCC 260098
|| |||||| ||| || || |||||| | | ||| | || ||| | ||| |
Sbjct 76802 ATTTCCAAGATGGCTGGTGGTATCGGTCTCAATGTTCACCGTATTCGTGCCACTGGCTCT 76743
Query 260099 TACGTGGCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAAC 260158
||| | || ||||| ||||| || |||||| | || |||||||| || ||||| |||
Sbjct 76742 TACATTGCTGGCACTAACGGTACTTCGAACGGCATCGTTCCCATGCTACGTGTTTTCAAC 76683
Query 260159 GACACGGCGCGCTACGTCGACCAG 260182
|||| || || || || ||||||
Sbjct 76682 AACACCGCCCGTTATGTTGACCAG 76659
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7177716677198760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |