Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20manginecans_20[genbank_20GCA_5F000712455.1_202014-06- 26] 980 sequences; 31,706,104 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq116 205 1e-47 seq105 140 4e-28 >seq116 Length=83673 Score = 205 bits (226), Expect = 1e-47 Identities = 639/981 (65%), Gaps = 20/981 (2%) Strand=Plus/Plus Query 69268 AGTGCTACAGATGCTAGATTACAAACTGCTACCTCATTAGAATTTGCA---TATTGTATT 69324 || |||| ||||||||| || || || || ||||||| || ||| || | || Sbjct 76171 AGGGCTAGAGATGCTAGGTTGCACACAGCGACCTCATCAGGG---GCACAGTACTCGATA 76227 Query 69325 ATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTG 69384 ||||| || || || || || || || || ||||||| |||||| ||||| | Sbjct 76228 ATCTCAGTGCACAGGTTCGAACTGCGAATGGTACCTAGATTTTTCTGATTGCTCTTGCGG 76287 Query 69385 TTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAATA 69444 || ||| ||| ||||| || ||||| || | ||||| ||| |||||| || | ||| Sbjct 76288 TTGCAGTGGTCTTTGTAGAGCATAAAAGGGTTGCCAGTCTCAGTCTGAGCCTCCAGAATG 76347 Query 69445 GATTTCCAAACGACCCTAGCATTTATTACGGTCTTGTAAC---GCTTCTCTTTTTCATAT 69501 | | ||| | | || || | || | || || | ||| || || || Sbjct 76348 GCATACCACAGTTTCTGGGCCTTGACAAC---CATGCGACCGCGACCCTCCTTCTCGTAC 76404 Query 69502 TGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTT 69561 | | ||| || || || || || || | ||| |||| || || |||||||| Sbjct 76405 TTTTCATACAGAGCCTCAAACTCTTCGCCATAGCAATCCGCCAAGCCGGGGCATTCATTG 76464 Query 69562 GGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATC 69621 || ||||| | | ||| | |||| | || ||| || ||||| || | ||| ||| Sbjct 76465 GGGCACATGAGAGTCCAGTCCTCATTCTTCTCAACACGCTTCATGAACAAGTCGCAGATC 76524 Query 69622 CAAAGAGCTATAAAGAGATCTCTGGTTCTATTTTCTTCATTTCC-TGTAttttttttAAG 69680 || || || | || || || | | | |||||| ||||| || | || |||| Sbjct 76525 CACAGGGCCAAGAATAGGTCACGAGCACGGACTTCTTCCTTTCCGTGGTTCTTGCGTAAG 76584 Query 69681 ATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGG 69740 ||||| ||||| | | ||||| ||||||||| || ||||| || || | | |||| || Sbjct 76585 -TCGAGGAACTCGAAGACATCAGCATGCCATGGCTCGAGATAAATGGCAAAGGCTCCAGG 76643 Query 69741 TCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGG 69800 ||| || ||||| ||||| || | || | ||| ||||| || | || | ||||| || Sbjct 76644 TCGCTTGTTTCCACCCTGGTCAACATAACGGGCGGTGTTGTTGAAAACACGTAGCATGGG 76703 Query 69801 AATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATT 69860 || || || || || |||| || || |||| ||| ||| || | || |||||| Sbjct 76704 AACGATGCCGTTCGAAGTACCGTTAGTGCCAGCAATGTAAGAGCCAGTGGCACGAATACG 76763 Query 69861 ACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGT 69920 || | ||||| || || || ||||| || || || | |||||| || | || Sbjct 76764 GTGAACATTGAGACCGATACCACCAGCCATCTTGGAAATCATGGCACAAGTCTTGAGGGT 76823 Query 69921 GTCATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTAGACATTTG 69980 || || || ||||| ||||| ||||| |||||| | || ||||| ||||| || Sbjct 76824 ATCGTAAATGCCCTCGATGCTGTCATCCTTCATGTCGACTAGGAAACATGAAGACAACTG 76883 Query 69981 ATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGA 70040 | || ||| || |||||||| | ||||| |||||||||||||| | || ||| Sbjct 76884 AGCCTGGGGAGTACCGGCATTAAAGAGCGTAGGTGATGCGTGAGTGAAGAACTTGCTAGA 76943 Query 70041 AAGCAGATTGTATGTTTCAA-TAGCTGAT--TCTATATCCCACTGATGAATTCCTATCGC 70097 | || ||||| ||||||| | ||| || | || | | ||| || | || Sbjct 76944 CATAAGGTTGTAGGTTTCAAGCACACGATCGACTTTGTCACCC---CAAATACCCACAGC 77000 Query 70098 GACACGCATCAACATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTA 70157 |||||||| | ||| ||||| || || || || | ||| || | ||| | ||||| Sbjct 77001 AACACGCATTATCATGTGCTGGGGACGCTCAACAATCTTACCATCAAGTTTGAGTAGGTA 77060 Query 70158 TGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 70217 || || || || ||||| ||||| || | ||| ||||| | ||||| | ||| Sbjct 77061 CGAACGCTCGAGCGTCTTAAAGCCAAAGTACTGGTAGTTGAAGTCACGGTCGTACACAAT 77120 Query 70218 AACAGAATTTAGTTTATCCTT 70238 |||| | || | |||||| Sbjct 77121 GGCAGAGTCCAGCTCATCCTT 77141 >seq105 Length=86313 Score = 140 bits (154), Expect = 4e-28 Identities = 545/850 (64%), Gaps = 10/850 (1%) Strand=Plus/Minus Query 39326 TTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTT 39385 || ||||| || || || || ||||| || || ||||| ||||| | | || || || Sbjct 44900 TTCTGGTAGTCGCCGACACGCTTCTCAAAGAAGTTAGTCTTGCCGCCGAGCGAGATGTTC 44841 Query 39386 TCCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCCTAATTCTGAAATC 39445 |||||||| || || || || || ||| || || | |||| | || | Sbjct 44840 TCCATGAAGTCGAAGGGGTTTGTGGCACGGTACACCTTCTCGTTGCCTAGAGCAACAAGC 44781 Query 39446 AATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGAGT 39505 | | || |||||||| || ||||| ||||||| ||| |||||||||| || Sbjct 44780 AGGCGGTCAGCAACAAACTCAATGTACTGCTTCATCAGATCAGCGTTCATTCCTAGCAGA 44721 Query 39506 TTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTATC 39565 || |||||||| || || ||||| || ||||| | ||||| || || || ||| Sbjct 44720 CCGCAGGGCAGAGCCTCGGTCAGGAACTCCTTCTCGATCACGACGGCATCAGTGATGATC 44661 Query 39566 GATGTTACTACCTCATCACTCGGTGGATGCAATAAATGTTTAAACATTAAGCAGGCGAAG 39625 | || | || | || || | | | ||| |||| | ||| || ||| Sbjct 44660 TTTTGCACAAGGTCCTTGCTGGGGCGGTTGTTCAGATGCGAGAACAGCAGGCAAGCAAAG 44601 Query 39626 TCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATT 39685 || || ||||||||||| | | ||| | ||||| || || || || |||||||| Sbjct 44600 TCGGTGTGCAGGCCCTCATCACGAGAAATAAGCTCGTTTGAGAAGGTCAGACCAGGCATG 44541 Query 39686 AGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCT 39745 ||||||||||| |||||| || |||| || || | || || || |||||||| || Sbjct 44540 AGACCACGCTTGCGGAGCCAGAAGATGGAGGCGAAGGCGCCTGAGAAAAAGATGCCCTCG 44481 Query 39746 ACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATTAT--GT-ATCCACTTC 39802 || || ||||| ||||| || | || | | | | || || | || ||||||||| Sbjct 44480 ACAGCAGCAAAGGCAACTAGGCGCTGGGCAAACGTCGACTCCTTGTCGGTGATCCACTTC 44421 Query 39803 TGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGATA- 39861 | ||||| || || || | || || || || || || ||||| || || || Sbjct 44420 AGAGCCCAGTCGGCCTTGCGGCGGATGCAGGGAATAGTGTCAATGGCATTGAACAGGTAT 44361 Query 39862 ATGTTTTTC-ATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAAT 39920 || | | | | || || | || || || || | ||| || |||| || | Sbjct 44360 GTGCGCTGCGAGGGC--TCCTTGATGTAGGTGTCAATCAGCAGCGAGTAGGTTTCAGAGT 44303 Query 39921 GGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCT 39980 |||||||||| ||| ||||| || ||||| || || | || || | || || |||| Sbjct 44302 GGATGTTTTCCATCATGATCTGGAAACCGTAGAAGCAGCGGGCCTCGGGGATCTGCACCT 44243 Query 39981 CTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATG 40040 | | || | || | | |||||| || || || |||||| || ||||| || | Sbjct 44242 CGCCTGAGAAGCGCTCAACGAGATTTTCGTTGACGATGCCATCAGAGGCAGCAAAGAAGG 44183 Query 40041 CCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCA---ATTTATTCCAGTCATTGA 40097 | | | || || || || | || || ||| || |||||||| | || Sbjct 44182 CAAGAATGTGGGAGATGAAGTACTGCTCGTCTTTGTTCAGACGGTTGTTCCAGTCGTGGA 44123 Query 40098 TATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACA 40157 ||| || || | ||| | || ||||| ||||| || || ||||| ||||| ||||||| Sbjct 44122 GATCCTTAGACAGATCAATCTCCTCAGCAGTCCAGAAGGAGGCCTCGGCCTTCTTGTACA 44063 Query 40158 TGTTCCATAT 40167 | | ||| || Sbjct 44062 TCTGCCAGAT 44053 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686900385367200