Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20manginecans_20[genbank_20GCA_5F000712455.1_202014-06- 26] 980 sequences; 31,706,104 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq116 158 2e-33 seq105 102 1e-16 seq415 87.8 2e-12 >seq116 Length=83673 Score = 158 bits (174), Expect = 2e-33 Identities = 1032/1639 (63%), Gaps = 31/1639 (2%) Strand=Plus/Plus Query 110369 TAGTACATCCCGGTCTTGAGTCCTTGTTTCCATGCGTACATA-TGCATAGAAGAGAGCTT 110427 |||||||| || |||||||| ||| ||||||| || || | ||||| | || ||| Sbjct 75307 TAGTACATGCCCGTCTTGAGACCTAGTTTCCA-GCCAGCAAAGTGCATGCTGGTGATCTT 75365 Query 110428 GGACATCGTTGGACTTTCCATGAAGAGGTTCATACTTTGACTTTGGTCAATGAAGCGCCC 110487 | ||| || ||| || |||| | ||| | | || |||||||||||| || Sbjct 75366 GCCCATGGTAGGATCTTTCATGTGAATGTTTAGAGACTGCGATTGGTCAATGAAAGCACC 75425 Query 110488 CCGTTGTGCCGCCATATCAATGACATCCTTCATCTT---AATTTCCCAAACTGTGCGATA 110544 || | || ||||| | | || | | || ||| |||||||| || || Sbjct 75426 ACGATCAGCAGCCATTTGCA---CAACTGTACGCTGGGAAATCTCCCAAACGGTCTTGTA 75482 Query 110545 GAGATTCTTGATATCATCTGGGATATCTGAGATATTCTGGATGGAACCCCCCGCCTTCAC 110604 ||| || |||||| | || || ||||| ||||| ||||| || || | Sbjct 75483 CAGAGCTTTAATATCAGCAGGAATGCTAGAGATGTTCTGAATGGAGCCATTGTCCGCAAT 75542 Query 110605 CATGAGATCCTTCATATCCTTGGACCAGAGACCAA--TCTTCTTGAGGTCATTGACGAGG 110662 ||| ||| |||||||| | ||||| | ||||| || || |||||| | ||| Sbjct 75543 AATGCGATTCTTCATATTGTCAGACCATAAACCAAGATCGACT--AGGTCACGTAGGAGC 75600 Query 110663 TGCTTGTTGACAATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGTG 110722 |||||| | ||||| || || || | | | |||| ||||| | |||| Sbjct 75601 CAGGGGTTGACGACCTGGAACTCGCCAGCAAGAACGCGGCGCTGGTAAATGTTGGATGTG 75660 Query 110723 TATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGT 110782 || ||||| ||||| ||||| || |||| || || | ||| |||||| ||||| ||| Sbjct 75661 TAGGGTTCGAAGCACTCATTGTTGCCCAGAATCTGCGACGTGCTGGCTGTAGGCATGGGT 75720 Query 110783 GCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAACATCCCAG 110842 || | | |||| || || | ||| | || ||| || ||||| ||| | |||| Sbjct 75721 GCAACTAGAAGAGAATTGCGTACACCATGCTGCTTAATCTTCTCCTTTAGAGAAGTCCAG 75780 Query 110843 TCGTA--GTTGAGCTTGGTTTCACCTTCCCACATGTCAAACTGAAGCACCCCTTGGGACG 110900 || | | | | || || |||| | ||||||| |||||||| | | |||||||| Sbjct 75781 TCCCACAGATCA-CTAGGAGTCACAT-CCCACATATCAAACTGCAAGATGCCTTGGGAGA 75838 Query 110901 CGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGCCT 110960 | |||||||||||| | ||| || | ||| | | | || | ||| || Sbjct 75839 CAGGAGAACCCTCATAAGTTGAGTAAGTACCCTCCGTCTGGGCGATTTCCATTGAAGCAG 75898 Query 110961 CCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTG 111020 || | ||||| || ||||||||||| || | || | || |||||| | Sbjct 75899 TTAGTGCGGCGTGGTAGATGGTTTCAAAAATCTGCTTGTTGAGCTGGCGTGCTTCAGGGG 75958 Query 111021 AATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAA 111080 | ||||| | |||| || || | || || || || || ||||| | ||||| Sbjct 75959 ATTCAAAAGGCATGCGGAGAGCAAGGAAAGCGTCAGCCAGGCCCTGTACACCGACACCAA 76018 Query 111081 TAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAATTTCTGTCAA 111140 | || | ||| ||||| || || | || || || || || ||| || | Sbjct 76019 TGGGACGGTGGCGCATGTTGCTGTTGTGAGCTTCCTGGACAGGGTAGTGATTCACATCGA 76078 Query 111141 TGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAA 111200 ||| |||||||| || ||||| | |||| ||| || || |||| | | ||| Sbjct 76079 TGATGCGGTTTAGGTTGCGAACAACAACTTGGGTGACTTCGTGTAGCTTTTTAAAGTCAT 76138 Query 111201 AAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAG 111260 | | | | | | || | |||||||| | ||||| | ||||| |||| Sbjct 76139 ACTCACCCTTGTTGTAGTCCACGAAGGAAGGAAGGGCTAGAGATGCTAGGTTGCACACAG 76198 Query 111261 CCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCG 111320 | |||||| | |||||| | ||| || || || | ||| ||||| ||| | Sbjct 76199 CGACCTCATCAGGGGCACAGTACTCGATAATCTCAGTGCACAGGTTCGAACTGCGAATGG 76258 Query 111321 TCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCG 111380 | || | ||| || || || ||||| |||||| || ||||||||||| | || Sbjct 76259 TACCTAGATTTTTCTGATTGCTCTTGCGGTTGCAGTGGTCTTTGTAGAGCATAAAAGGGT 76318 Query 111381 TCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCA-AACATCGGCGGCTGGTACAATG 111439 | || ||||| ||||| | | ||||| || | ||| | || | | || | |||| Sbjct 76319 TGCCAGTCTCAGTCTGAGCCTCCAGAATGGCATACCACAGTTTCTGGGCCTTG-ACAACC 76377 Query 111440 GCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACC 111499 | | || |||||| |||||||||| || || || |||||||| || ||| Sbjct 76378 ATGCGACCGCGACCCTCCTTCTCGTACTTTTCATACAGAGCCTCAAACTCTTC-GCCATA 76436 Query 111500 GC-GTCGGAGAGACCTGGTGCCTT-GTCTGGACAGAAAAGAGACCATTGACCACCTTC-- 111555 || || | | | | || || || | || || | |||| ||| | || | ||| Sbjct 76437 GCAATCCGCCA-AGCCGGGGCATTCATTGGGGCACATGAGAGTCCA--GTCCTCATTCTT 76493 Query 111556 CTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTA-CACC 111614 |||||| ||||||||||| | ||| |||||||||| | || || || | | ||| Sbjct 76494 CTCAACACGCTTCATGAACAAGTCGCAGATCCACAGGGCCAAGAATAGGTCACGAGCACG 76553 Query 111615 GAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCC 111674 || | ||||| | || ||||| ||||| || |||||||| | || ||| || |||| Sbjct 76554 GA-CTTCTTCCTTTCCGTGGTTCTTGCGTAAGTCGAGGAACTCGAAGACATCAGCATGCC 76612 Query 111675 ATGGCTCAAGATAGACTGCGATAGATCCCTTTCG---ACGCCCAGCTTGATTTACATAGC 111731 ||||||| ||||| | || | | ||| ||| ||| | || | ||||| | Sbjct 76613 ATGGCTCGAGATAAATGGCAAAGGCTCCAGGTCGCTTGTTTCCACCCTGGTCAACATAAC 76672 Query 111732 GCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCC 111791 | || ||| ||| || || || ||||| |||| || || | || ||| || || | Sbjct 76673 GGGCGGTGTTGTTGAAAACACGTAGCATGGGAACGATGCCGTTCGAAGTACCGTTAGTGC 76732 Query 111792 CCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCC 111851 | ||| ||| | |||| | | | || | | | || ||||| |||||| Sbjct 76733 CAGCAATGTAAGAGCCAGTGGCACGAATACGGTGAACATTGAGACCGATACCACCAGCCA 76792 Query 111852 ACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCT 111911 ||| || || ||||| | | || || | || || || | ||| ||| |||| Sbjct 76793 TCTTGGAAATCATGGCACAAGTCTTGAGGGTATCGTAAATGCCCTCGATGCTGTCATCCT 76852 Query 111912 TGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGG 111971 | || ||| ||||| || |||| ||| | || ||||| ||||| ||||| | Sbjct 76853 TCATGTCGACTAGGAAACATGAAGACAACTGAGCCTGGGGAGTACCGGCATTAAAGAGCG 76912 Query 111972 TTGGTGTTGCGTGAATGAA 111990 | |||| ||||||| |||| Sbjct 76913 TAGGTGATGCGTGAGTGAA 76931 >seq105 Length=86313 Score = 102 bits (112), Expect = 1e-16 Identities = 338/520 (65%), Gaps = 7/520 (1%) Strand=Plus/Minus Query 122659 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCT 122718 ||||| || ||| || |||||||| || |||||||| || ||||||||| ||||| Sbjct 44606 GCAAAGTCGGTGTGCAGGCCCTCATCACGAGAAATAAGCTCGTTTGAGAAGGTCAGACCA 44547 Query 122719 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 122778 ||||||||||| ||||| | ||| | || | | ||| | || ||||| ||||| Sbjct 44546 GGCATGAGACCACGCTTGCGGAGCCAGAAGATGGAGGCGAAGGCGCCTGAGAAAAAGATG 44487 Query 122779 CCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTG-CATCAAA 122837 ||||| ||| ||||| |||| ||||| | ||| || | ||| | ||| | | Sbjct 44486 CCCTCGACAGCAGCAAAGGCAACTAGGCGCTGGGCAAACG-TCGACTCCTTGTCGGTGAT 44428 Query 122838 CCATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAA 122897 ||| |||| ||||| | ||||| || || || | ||| | ||||| | || Sbjct 44427 CCACTTCAGAGCCCAGTCGGCCTTGCGGCGGATGCAGGGAATAGTGTCAATGGCATTGAA 44368 Query 122898 TAACTGCTTCTTTTCAGATCCATCCTTAATGTATTTGTCAATCAATTTTGAATATGTTTC 122957 | | | | || ||||| ||||| ||||||||| || || ||||| Sbjct 44367 CAGGTATGTGCGCTGCGAGGGCTCCTTGATGTAGGTGTCAATCAGCAGCGAGTAGGTTTC 44308 Query 122958 GCCATGAACCATTT-CATTATGGCATTGATATGCGTAGAATGAGCGCGCTTCGCTTATCT 123016 || | ||| ||| ||| | || | ||||||| |||| || ||| |||| Sbjct 44307 AGAGTGGATGTTTTCCATCATGATCTGGA-AACCGTAGAAGCAGCGGGCCTCGGGGATCT 44249 Query 123017 GAACCTCATCCGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAA 123076 | ||||| | | || | | || ||| || || || ||||| || |||||| Sbjct 44248 GCACCTCGCCTGAGAAGCGCTCAACGAGATTTTCGTTGACGATGCCATCAGAGGCAGCAA 44189 Query 123077 AGAATGCCAGGATGTACTTTATGAATTTCTTTTCATTTTCATTCA---GGGTCTTCCAGT 123133 |||| || || |||| ||||| | || || | || |||| || | ||||||| Sbjct 44188 AGAAGGCAAGAATGTGGGAGATGAAGTACTGCTCGTCTTTGTTCAGACGGTTGTTCCAGT 44129 Query 123134 CGTCAAGATCTTTGGACAAATCAACTTCTTCCGCAGTCCA 123173 ||| ||||| || |||| ||||| || || |||||||| Sbjct 44128 CGTGGAGATCCTTAGACAGATCAATCTCCTCAGCAGTCCA 44089 >seq415 Length=20797 Score = 87.8 bits (96), Expect = 2e-12 Identities = 210/313 (67%), Gaps = 10/313 (3%) Strand=Plus/Plus Query 11630 GCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGA 11689 ||||||||||| ||||| || | || ||||| || | ||| || | |||| ||| Sbjct 13644 GCATCAATCTCGTCAATAAAAATGATGCATGGCGCGTTCTTGCGCGCCGTAGCAAAAAGA 13703 Query 11690 TCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGT--TTGCGGCAGAGC 11747 || || || | | |||||| || ||||||||||| ||||| | || || || | Sbjct 13704 TCACGCACACGCGACGGACCCACGCCGACAAACATCTCGACAAACTCGGAGCCGCTGA-C 13762 Query 11748 ACTGGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCG 11807 || || ||| || || ||| || || || |||| ||| || || ||||| |||| Sbjct 13763 GCT-GAAGAACGGAACGCCTGACTCGCCAGCCGTGGCCTTGGCTAGCAGCGTCTTGCCCG 13821 Query 11808 TACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACC---ACTTCCAAAAT 11864 | || || |||| || | ||||| || |||||||||||||| || |||| | Sbjct 13822 TTCCCGGAGGGCCCGATAGGATAGCGCCGCGCGGGATCTTGGCACCCAGACGCACAAACT 13881 Query 11865 ATCTCTCGGGTTGCTTGAGAAAATCCACAATCTCTTCAAGTTCATCTTTGGCCGCGTCAA 11924 | ||||| | |||||| || | ||||| ||| | || | |||||| |||| | Sbjct 13882 ---TTTCGGGCTTCTTGAGGAATTGCACAAACTCCATGATCTCGACCTTGGCCTCGTCCA 13938 Query 11925 TCCCCTCAACATC 11937 | || | ||||| Sbjct 13939 TTCCGGCCACATC 13951 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628024306608000