Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20manginecans_20[genbank_20GCA_5F000712455.1_202014-06- 26] 980 sequences; 31,706,104 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq116 183 3e-41 seq105 154 2e-32 seq161 100 3e-16 >seq116 Length=83673 Score = 183 bits (202), Expect = 3e-41 Identities = 404/596 (68%), Gaps = 16/596 (3%) Strand=Plus/Minus Query 53195 ATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACGAC 53254 ||||| || || ||||||| |||||| | | ||||| | ||| || ||| || Sbjct 77009 ATGCGTGTTGCTGTGGGTATTTGGGGTGACAAAGTCGATCGTGTGCTTGAAACCTACAAC 76950 Query 53255 TTAATG---AGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACG 53311 | ||| ||| |||| ||| || ||||| | || || || || || || ||||| Sbjct 76949 CTTATGTCTAGC---AAGTTCTTCACTCACGCATCACCTACGCTCTTTAATGCCGGTACT 76893 Query 53312 AATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGC 53371 || ||||| |||| || ||||| || | |||||||||||| ||||| ||| Sbjct 76892 CCCCAGGCTCAGTTGTCTTCATGTTTCCTAGTCGACATGAAGGATGACAGCATCGAGGGC 76833 Query 53372 ATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATC 53431 || ||||| || |||||| |||||| || |||||| | | |||||||||||| || Sbjct 76832 ATTTACGATACCCTCAAGACTTGTGCCATGATTTCCAAGATGGCTGGTGGTATCGGTCTC 76773 Query 53432 CACTGCTCGAACGTC--CGTGCGAACGGCACACCAATCAAGGGGACGAACGG--CGTCGC 53487 | || || | ||| ||||| | ||| | || || || ||||| | ||| Sbjct 76772 AA-TGTTC-ACCGTATTCGTGCCACTGGCTCTTACATTGCTGGCACTAACGGTACTTCGA 76715 Query 53488 CGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGG 53547 | || ||||| || ||||| || || ||||||||||| ||||| || || ||||||| Sbjct 76714 --ACGGCATCGTTCCCATGCTACGTGTTTTCAACAACACCGCCCGTTATGTTGACCAGGG 76657 Query 53548 TGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTAT 53607 ||| ||||| || | || ||||| || |||||||| ||||| || || | | Sbjct 76656 TGGAAACAAGCGACCTGGAGCCTTTGCCATTTATCTCGAGCCATGGCATGCTGATGTCTT 76597 Query 53608 GGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGC-CGTGACCTGT 53666 ||||| ||||| | || ||| || || | ||||| | || ||| |||||||| | Sbjct 76596 CGAGTTCCTCGACTTACGCAAGAACCACGGAAAGGAAGAAGTCCG-TGCTCGTGACCTAT 76538 Query 53667 TTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGT 53726 | || |||||||| ||| | |||||| | || |||||| | ||||| ||| Sbjct 76537 TCTTGGCCCTGTGGATCTGCGACTTGTTCATGAAGCGTGTTGAGAAGAATGAGGACTGGA 76478 Query 53727 ACCTGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTT 53782 || |||||||| || || ||||||||| | || | ||| || || |||||| Sbjct 76477 CTCTCATGTGCCCCAATGAATGCCCCGGCTTGGCGGATTGCTATGGCGAAGAGTTT 76422 Score = 91.5 bits (100), Expect = 2e-13 Identities = 126/173 (73%), Gaps = 4/173 (2%) Strand=Plus/Minus Query 55744 GACGGTGTGGGAGATTCCACAGA--AGAGTCTGATTGACATGAGTGCTGATCGTGGTGCG 55801 ||| || ||||||||| | ||| | ||| || | | ||| ||||||||||||||| Sbjct 75477 GACCGTTTGGGAGATTTCCCAGCGTACAGT-TG-TGCAAATGGCTGCTGATCGTGGTGCT 75420 Query 55802 TACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCCTTCACTGGCCAAGTTG 55861 | ||| ||||| || |||||||| ||||| |||| | ||||| | ||| |||| | Sbjct 75419 TTCATTGACCAATCGCAGTCTCTAAACATTCACATGAAAGATCCTACCATGGGCAAGATC 75360 Query 55862 AGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGTATGTACTA 55914 | | ||||||||| || ||||| || ||||||||||| |||||||| Sbjct 75359 ACCAGCATGCACTTTGCTGGCTGGAAACTAGGTCTCAAGACGGGCATGTACTA 75307 Score = 82.4 bits (90), Expect = 8e-11 Identities = 107/148 (72%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 55096 TGACTTTGACAAGCTTCACGAAGTGACGCGTGTTGTGACTCGGAACCTGAACCGGGTCAT 55155 ||||||| | ||||| |||||||| || | ||||| ||| ||||| ||||| |||| Sbjct 76137 TGACTTTAAAAAGCTACACGAAGTCACCCAAGTTGTTGTTCGCAACCTAAACCGCATCAT 76078 Query 55156 CGACAAGAATTACTACCCGACTGAAGCGGCGCGCAAGTCCAACCTCCGGCACCGGCCCAT 55215 ||| |||| ||||||| | | || | ||| |||| | || ||||| ||||| Sbjct 76077 CGATGTGAATCACTACCCTGTCCAGGAAGCTCACAACAGCAACATGCGCCACCGTCCCAT 76018 Query 55216 CGCCATCGGTGTACAGGGCTTGGCCGAC 55243 | |||||||||||||| |||| ||| Sbjct 76017 TGGTGTCGGTGTACAGGGCCTGGCTGAC 75990 >seq105 Length=86313 Score = 154 bits (170), Expect = 2e-32 Identities = 537/822 (65%), Gaps = 32/822 (4%) Strand=Plus/Minus Query 74463 TAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATC 74522 || || ||||| ||||| ||||| ||||| ||||| || | | ||||||||||||||| Sbjct 44894 TAGTCGCCGACACGCTTCTCAAAGAAGTTAGTCTTGCCGCCGAGCGAGATGTTCTCCATG 44835 Query 74523 CAGTCGAAAGGGTTCTTTGCACCGTAAATAGGCTTCTC----CCCAAACTGTGCCATG-A 74577 ||||||| ||||| | |||| ||| | |||||| || | | | || | | Sbjct 44834 AAGTCGAAGGGGTTTGTGGCACGGTACAC---CTTCTCGTTGCCTAGA--GCAACAAGCA 44780 Query 74578 GGCGATCCGCCACAAATTGAATGTACTGCGTCATTTCTCCCGCATCCATGCCGATGAGTT 74637 |||| || || ||||| | |||||||||| |||| | || | ||| || | || Sbjct 44779 GGCGGTCAGCAACAAACTCAATGTACTGCTTCATCAGATCAGCGTTCATTCCTAGCAGAC 44720 Query 74638 TGCACGGCAGTGCCTCGGTGATAAACTCACTCTCCACCTCGCAAGCC-CATTGGACAATC 74696 ||| ||||| |||||||| | ||||| |||| | | || || || || | ||| Sbjct 44719 CGCAGGGCAGAGCCTCGGTCAGGAACTCCTTCTCGATCACGACGGCATCAGTG-ATGATC 44661 Query 74697 TTGTG---AATGTCTTTGGAAGGGCACTTTTCCCTCAGGTGAGAGTAAAGC-GTCACGGC 74752 || || || ||| ||| |||| || | |||| || ||| | ||| | || | | Sbjct 44660 TTTTGCACAAGGTCCTTGCTGGGGCGGTTGT---TCAGATGCGAGAACAGCAGGCAAG-C 44605 Query 74753 AAACTCCTGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGG 74812 ||| || ||| ||| ||||| | || | || || || || | || ||||| Sbjct 44604 AAAGTCGGTGTGCAGGCCCTCATCACGAGAAATAAGCTCGTTTGAGAAGGTCAGACCAGG 44545 Query 74813 CATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCC 74872 ||| || |||||||| | ||| ||||||| ||||| || ||| |||||||| Sbjct 44544 CATGAGACCACGCTTGCGGAGCCAGAAGATGGAGGCGAAGGCGCCTGAGAAAAAGATGCC 44485 Query 74873 TTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAACGGTGCATC---GGAAGTCATCCA 74929 |||||| |||||||| || ||||| || || |||| | || | || ||||| Sbjct 44484 CTCGACAGCAGCAAAGGCAACTAGGCGCTGGGCAAACGTCGACTCCTTGTCGGTGATCCA 44425 Query 74930 AGTCTGAGCCCATTCAGCTTTTCGTTTGACCGCAGGGAC-AGTATCGATCGCTTGGAAGA 74988 || ||||||| || || || || || ||||||| ||| || || || | ||| | Sbjct 44424 CTTCAGAGCCCAGTCGGCCTTGCGGCGGAT-GCAGGGAATAGTGTCAATGGCATTGAACA 44366 Query 74989 GGCTTGCCTTCTCTTCG--GGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCTC 75046 || || | | || || || ||||||| | ||||||||| || ||||| || || Sbjct 44365 GGTATG--TGCGCTGCGAGGGCTCCTTGATGTAGGTGTCAATCAGCAGCGAGTAGGTTTC 44308 Query 75047 CGAATGAATCGACTCGTTGAACGACTGGTACGCGTAGAAAGACCGCGCCTCTGCAATCTG 75106 || || || || | | |||| | ||||||| | || ||||| | ||||| Sbjct 44307 AGAGTGGATGTTTTCCATCATGATCTGGAAACCGTAGAAGCAGCGGGCCTCGGGGATCTG 44248 Query 75107 TACATCCTTTGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGCGAA 75166 || || ||| || | ||| ||| || |||||||||| || ||||| || || Sbjct 44247 CACCTCGCCTGAGAAGCGCTCAACGAGATTTTCGTTGACGATGCCATCAGAGGCAGCAAA 44188 Query 75167 AAAAGCCAGTACCATTTTGATAAAGTGGCGCTCATCGTCAGTGAGT---TTGTCCCAATC 75223 || || || | ||| |||| |||| || | | || |||| ||| || Sbjct 44187 GAAGGCAAGAATGTGGGAGATGAAGTACTGCTCGTCTTTGTTCAGACGGTTGTTCCAGTC 44128 Query 75224 CTTCAGGTCCCCCGCCAAATCAATCTCCTCGACCGTCCAGAA 75265 | || ||| | || |||||||||||| | |||||||| Sbjct 44127 GTGGAGATCCTTAGACAGATCAATCTCCTCAGCAGTCCAGAA 44086 >seq161 Length=64780 Score = 100 bits (110), Expect = 3e-16 Identities = 172/248 (69%), Gaps = 4/248 (2%) Strand=Plus/Minus Query 117326 GCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGTCCACTCGGCTCCAAGAGGTTC 117385 ||||||||| |||||||||||||||| ||| || | ||||| ||||||| ||| Sbjct 58716 GCAGCATCCGAACCACCAGCAAGACGCGAACCAAAGTTACCACTGGGCTCCAGACAGTTT 58657 Query 117386 AGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACAATCGTACCTTGGAGGCTCGCC 117445 | |||||||| || ||||||| ||||||| | ||| || ||| ||| || Sbjct 58656 ATGTTGTTGGAACCGACAAAGTCCTGAGCCAGACCAATAATGGTTTGTTGTAGGGATGCT 58597 Query 117446 TCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCCCGCCAGCTGAGCCACCTTCATG 117505 || || || || || | || || | | || | || ||||||| | | |||||||| Sbjct 58596 TCTCCGTGTTGGTAGGAGGTATGTCCAGAAACAAAACCAGCCAGCTCAACAACCTTCATA 58537 Query 117506 TC--TGACGTCAGGTTCTTCTTGAGGCAGGCATAAATCACCTTGCGCTGACTTGGCTTCA 117563 || ||| | ||| || ||| ||| || ||||| ||||| ||||||| ||||| | Sbjct 58536 TCCTGGAC--AATGTTTTTGCTGAAGCACGCGTAAATGACCTTCCGCTGACCAGGCTTAA 58479 Query 117564 GACCATCC 117571 |||||| Sbjct 58478 AGCCATCC 58471 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547209296604000