Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20manginecans_20[genbank_20GCA_5F000712455.1_202014-06-
26] 980 sequences; 31,706,104 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq116 183 3e-41
seq105 154 2e-32
seq161 100 3e-16
>seq116
Length=83673
Score = 183 bits (202), Expect = 3e-41
Identities = 404/596 (68%), Gaps = 16/596 (3%)
Strand=Plus/Minus
Query 53195 ATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACGAC 53254
||||| || || ||||||| |||||| | | ||||| | ||| || ||| ||
Sbjct 77009 ATGCGTGTTGCTGTGGGTATTTGGGGTGACAAAGTCGATCGTGTGCTTGAAACCTACAAC 76950
Query 53255 TTAATG---AGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACG 53311
| ||| ||| |||| ||| || ||||| | || || || || || || |||||
Sbjct 76949 CTTATGTCTAGC---AAGTTCTTCACTCACGCATCACCTACGCTCTTTAATGCCGGTACT 76893
Query 53312 AATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGC 53371
|| ||||| |||| || ||||| || | |||||||||||| ||||| |||
Sbjct 76892 CCCCAGGCTCAGTTGTCTTCATGTTTCCTAGTCGACATGAAGGATGACAGCATCGAGGGC 76833
Query 53372 ATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATC 53431
|| ||||| || |||||| |||||| || |||||| | | |||||||||||| ||
Sbjct 76832 ATTTACGATACCCTCAAGACTTGTGCCATGATTTCCAAGATGGCTGGTGGTATCGGTCTC 76773
Query 53432 CACTGCTCGAACGTC--CGTGCGAACGGCACACCAATCAAGGGGACGAACGG--CGTCGC 53487
| || || | ||| ||||| | ||| | || || || ||||| | |||
Sbjct 76772 AA-TGTTC-ACCGTATTCGTGCCACTGGCTCTTACATTGCTGGCACTAACGGTACTTCGA 76715
Query 53488 CGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGG 53547
| || ||||| || ||||| || || ||||||||||| ||||| || || |||||||
Sbjct 76714 --ACGGCATCGTTCCCATGCTACGTGTTTTCAACAACACCGCCCGTTATGTTGACCAGGG 76657
Query 53548 TGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTAT 53607
||| ||||| || | || ||||| || |||||||| ||||| || || | |
Sbjct 76656 TGGAAACAAGCGACCTGGAGCCTTTGCCATTTATCTCGAGCCATGGCATGCTGATGTCTT 76597
Query 53608 GGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGC-CGTGACCTGT 53666
||||| ||||| | || ||| || || | ||||| | || ||| |||||||| |
Sbjct 76596 CGAGTTCCTCGACTTACGCAAGAACCACGGAAAGGAAGAAGTCCG-TGCTCGTGACCTAT 76538
Query 53667 TTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGT 53726
| || |||||||| ||| | |||||| | || |||||| | ||||| |||
Sbjct 76537 TCTTGGCCCTGTGGATCTGCGACTTGTTCATGAAGCGTGTTGAGAAGAATGAGGACTGGA 76478
Query 53727 ACCTGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTT 53782
|| |||||||| || || ||||||||| | || | ||| || || ||||||
Sbjct 76477 CTCTCATGTGCCCCAATGAATGCCCCGGCTTGGCGGATTGCTATGGCGAAGAGTTT 76422
Score = 91.5 bits (100), Expect = 2e-13
Identities = 126/173 (73%), Gaps = 4/173 (2%)
Strand=Plus/Minus
Query 55744 GACGGTGTGGGAGATTCCACAGA--AGAGTCTGATTGACATGAGTGCTGATCGTGGTGCG 55801
||| || ||||||||| | ||| | ||| || | | ||| |||||||||||||||
Sbjct 75477 GACCGTTTGGGAGATTTCCCAGCGTACAGT-TG-TGCAAATGGCTGCTGATCGTGGTGCT 75420
Query 55802 TACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCCTTCACTGGCCAAGTTG 55861
| ||| ||||| || |||||||| ||||| |||| | ||||| | ||| |||| |
Sbjct 75419 TTCATTGACCAATCGCAGTCTCTAAACATTCACATGAAAGATCCTACCATGGGCAAGATC 75360
Query 55862 AGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGTATGTACTA 55914
| | ||||||||| || ||||| || ||||||||||| ||||||||
Sbjct 75359 ACCAGCATGCACTTTGCTGGCTGGAAACTAGGTCTCAAGACGGGCATGTACTA 75307
Score = 82.4 bits (90), Expect = 8e-11
Identities = 107/148 (72%), Gaps = 0/148 (0%)
Strand=Plus/Minus
Query 55096 TGACTTTGACAAGCTTCACGAAGTGACGCGTGTTGTGACTCGGAACCTGAACCGGGTCAT 55155
||||||| | ||||| |||||||| || | ||||| ||| ||||| ||||| ||||
Sbjct 76137 TGACTTTAAAAAGCTACACGAAGTCACCCAAGTTGTTGTTCGCAACCTAAACCGCATCAT 76078
Query 55156 CGACAAGAATTACTACCCGACTGAAGCGGCGCGCAAGTCCAACCTCCGGCACCGGCCCAT 55215
||| |||| ||||||| | | || | ||| |||| | || ||||| |||||
Sbjct 76077 CGATGTGAATCACTACCCTGTCCAGGAAGCTCACAACAGCAACATGCGCCACCGTCCCAT 76018
Query 55216 CGCCATCGGTGTACAGGGCTTGGCCGAC 55243
| |||||||||||||| |||| |||
Sbjct 76017 TGGTGTCGGTGTACAGGGCCTGGCTGAC 75990
>seq105
Length=86313
Score = 154 bits (170), Expect = 2e-32
Identities = 537/822 (65%), Gaps = 32/822 (4%)
Strand=Plus/Minus
Query 74463 TAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATC 74522
|| || ||||| ||||| ||||| ||||| ||||| || | | |||||||||||||||
Sbjct 44894 TAGTCGCCGACACGCTTCTCAAAGAAGTTAGTCTTGCCGCCGAGCGAGATGTTCTCCATG 44835
Query 74523 CAGTCGAAAGGGTTCTTTGCACCGTAAATAGGCTTCTC----CCCAAACTGTGCCATG-A 74577
||||||| ||||| | |||| ||| | |||||| || | | | || | |
Sbjct 44834 AAGTCGAAGGGGTTTGTGGCACGGTACAC---CTTCTCGTTGCCTAGA--GCAACAAGCA 44780
Query 74578 GGCGATCCGCCACAAATTGAATGTACTGCGTCATTTCTCCCGCATCCATGCCGATGAGTT 74637
|||| || || ||||| | |||||||||| |||| | || | ||| || | ||
Sbjct 44779 GGCGGTCAGCAACAAACTCAATGTACTGCTTCATCAGATCAGCGTTCATTCCTAGCAGAC 44720
Query 74638 TGCACGGCAGTGCCTCGGTGATAAACTCACTCTCCACCTCGCAAGCC-CATTGGACAATC 74696
||| ||||| |||||||| | ||||| |||| | | || || || || | |||
Sbjct 44719 CGCAGGGCAGAGCCTCGGTCAGGAACTCCTTCTCGATCACGACGGCATCAGTG-ATGATC 44661
Query 74697 TTGTG---AATGTCTTTGGAAGGGCACTTTTCCCTCAGGTGAGAGTAAAGC-GTCACGGC 74752
|| || || ||| ||| |||| || | |||| || ||| | ||| | || | |
Sbjct 44660 TTTTGCACAAGGTCCTTGCTGGGGCGGTTGT---TCAGATGCGAGAACAGCAGGCAAG-C 44605
Query 74753 AAACTCCTGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGG 74812
||| || ||| ||| ||||| | || | || || || || | || |||||
Sbjct 44604 AAAGTCGGTGTGCAGGCCCTCATCACGAGAAATAAGCTCGTTTGAGAAGGTCAGACCAGG 44545
Query 74813 CATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCC 74872
||| || |||||||| | ||| ||||||| ||||| || ||| ||||||||
Sbjct 44544 CATGAGACCACGCTTGCGGAGCCAGAAGATGGAGGCGAAGGCGCCTGAGAAAAAGATGCC 44485
Query 74873 TTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAACGGTGCATC---GGAAGTCATCCA 74929
|||||| |||||||| || ||||| || || |||| | || | || |||||
Sbjct 44484 CTCGACAGCAGCAAAGGCAACTAGGCGCTGGGCAAACGTCGACTCCTTGTCGGTGATCCA 44425
Query 74930 AGTCTGAGCCCATTCAGCTTTTCGTTTGACCGCAGGGAC-AGTATCGATCGCTTGGAAGA 74988
|| ||||||| || || || || || ||||||| ||| || || || | ||| |
Sbjct 44424 CTTCAGAGCCCAGTCGGCCTTGCGGCGGAT-GCAGGGAATAGTGTCAATGGCATTGAACA 44366
Query 74989 GGCTTGCCTTCTCTTCG--GGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCTC 75046
|| || | | || || || ||||||| | ||||||||| || ||||| || ||
Sbjct 44365 GGTATG--TGCGCTGCGAGGGCTCCTTGATGTAGGTGTCAATCAGCAGCGAGTAGGTTTC 44308
Query 75047 CGAATGAATCGACTCGTTGAACGACTGGTACGCGTAGAAAGACCGCGCCTCTGCAATCTG 75106
|| || || || | | |||| | ||||||| | || ||||| | |||||
Sbjct 44307 AGAGTGGATGTTTTCCATCATGATCTGGAAACCGTAGAAGCAGCGGGCCTCGGGGATCTG 44248
Query 75107 TACATCCTTTGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGCGAA 75166
|| || ||| || | ||| ||| || |||||||||| || ||||| || ||
Sbjct 44247 CACCTCGCCTGAGAAGCGCTCAACGAGATTTTCGTTGACGATGCCATCAGAGGCAGCAAA 44188
Query 75167 AAAAGCCAGTACCATTTTGATAAAGTGGCGCTCATCGTCAGTGAGT---TTGTCCCAATC 75223
|| || || | ||| |||| |||| || | | || |||| ||| ||
Sbjct 44187 GAAGGCAAGAATGTGGGAGATGAAGTACTGCTCGTCTTTGTTCAGACGGTTGTTCCAGTC 44128
Query 75224 CTTCAGGTCCCCCGCCAAATCAATCTCCTCGACCGTCCAGAA 75265
| || ||| | || |||||||||||| | ||||||||
Sbjct 44127 GTGGAGATCCTTAGACAGATCAATCTCCTCAGCAGTCCAGAA 44086
>seq161
Length=64780
Score = 100 bits (110), Expect = 3e-16
Identities = 172/248 (69%), Gaps = 4/248 (2%)
Strand=Plus/Minus
Query 117326 GCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGTCCACTCGGCTCCAAGAGGTTC 117385
||||||||| |||||||||||||||| ||| || | ||||| ||||||| |||
Sbjct 58716 GCAGCATCCGAACCACCAGCAAGACGCGAACCAAAGTTACCACTGGGCTCCAGACAGTTT 58657
Query 117386 AGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACAATCGTACCTTGGAGGCTCGCC 117445
| |||||||| || ||||||| ||||||| | ||| || ||| ||| ||
Sbjct 58656 ATGTTGTTGGAACCGACAAAGTCCTGAGCCAGACCAATAATGGTTTGTTGTAGGGATGCT 58597
Query 117446 TCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCCCGCCAGCTGAGCCACCTTCATG 117505
|| || || || || | || || | | || | || ||||||| | | ||||||||
Sbjct 58596 TCTCCGTGTTGGTAGGAGGTATGTCCAGAAACAAAACCAGCCAGCTCAACAACCTTCATA 58537
Query 117506 TC--TGACGTCAGGTTCTTCTTGAGGCAGGCATAAATCACCTTGCGCTGACTTGGCTTCA 117563
|| ||| | ||| || ||| ||| || ||||| ||||| ||||||| ||||| |
Sbjct 58536 TCCTGGAC--AATGTTTTTGCTGAAGCACGCGTAAATGACCTTCCGCTGACCAGGCTTAA 58479
Query 117564 GACCATCC 117571
||||||
Sbjct 58478 AGCCATCC 58471
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547209296604000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |