Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20manginecans_20[genbank_20GCA_5F000712455.1_202014-06-
26] 980 sequences; 31,706,104 total letters
Query= NC_029692.1
Length=362276
Score E
Sequences producing significant alignments: (Bits) Value
seq28 161 2e-34
seq100 150 4e-31
seq61 145 2e-29
>seq28
Length=151797
Score = 161 bits (178), Expect = 2e-34
Identities = 157/202 (78%), Gaps = 0/202 (0%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
||||| | ||||||||| || ||||| || ||||| || || | |||||| | |||||
Sbjct 108533 AGGACCAAGTGAAGAGTAGATTCTTTCTGAATGTTGTAGTCGGAAAGGGTACGGCCATCC 108474
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| |||||||| || |||||||| || || || ||||| ||||||| || |||||||||
Sbjct 108473 TCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCC 108414
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|||||||| || ||||| || |||||||| ||| || || ||||| || || |||
Sbjct 108413 TGGATCTTGGACTTGACGTTGTCAATGGTGTCGGAGGACTCGACTTCGAGGGTAATGGTC 108354
Query 211083 TTTCCCGTGAGAGTCTTTACAA 211104
||||| || || ||||| ||||
Sbjct 108353 TTTCCGGTAAGGGTCTTGACAA 108332
Score = 140 bits (154), Expect = 8e-28
Identities = 158/212 (75%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|| || | ||||||||| ||||| || |||||||| || || | ||||| | |||||
Sbjct 108989 AGAACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCC 108930
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| |||||||| || |||||||| || || || ||||| ||||| | || ||||| |||
Sbjct 108929 TCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCGGGAGGGATACCCTCCTTATCC 108870
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|||||||| || || || || ||||| |||||| || || ||||| || || |||
Sbjct 108869 TGGATCTTGGACTTGACATTGTCAATGGTATCAGAGGACTCGACTTCGAGGGTAATGGTC 108810
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|| ||||| | ||||| || || | |||||
Sbjct 108809 TTGCCCGTCAAGGTCTTGACGAAGATTTGCAT 108778
Score = 127 bits (140), Expect = 5e-24
Identities = 141/188 (75%), Gaps = 0/188 (0%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|| || || || ||||| ||||| || || ||||| || || | ||||| | |||||
Sbjct 108249 AGCACTAGATGGAGAGTAGACTCCTTCTGAATGTTGTAGTCGGACAGGGTGCGGCCATCC 108190
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| |||||||| || |||||||| || || || ||||| ||||| | || |||||||||
Sbjct 108189 TCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGGATACCCTCCTTGTCC 108130
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|||||||| || ||||| || || || || ||| || |||||||| ||||| |||
Sbjct 108129 TGGATCTTAGACTTAACGTTGTCAATAGTATCCGAGGACTCCACCTCGAGGGTGATGGTC 108070
Query 211083 TTTCCCGT 211090
|| || ||
Sbjct 108069 TTGCCAGT 108062
Score = 122 bits (134), Expect = 2e-22
Identities = 154/212 (73%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|| || | ||||||||| || ||||| || ||||| || |||| ||||| | |||||
Sbjct 108761 AGAACCAAGTGAAGAGTAGATTCTTTCTGAATGTTGTAGTCCGACAGGGTACGGCCATCC 108702
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| |||||||| || || || || || || || || || || || | || ||||| |||
Sbjct 108701 TCGAGCTGCTTTCCAGCAAAAATGAGACGCTGCTGATCCGGGGGGATACCCTCCTTATCC 108642
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|||||||| || || || || ||||| |||||| || || ||||| || || |||
Sbjct 108641 TGGATCTTGGACTTGACATTGTCAATGGTATCAGAGGACTCGACTTCGAGGGTAATGGTC 108582
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|| ||||| | ||||| || || | |||||
Sbjct 108581 TTGCCCGTCAAGGTCTTGACGAAGATTTGCAT 108550
>seq100
Length=89839
Score = 150 bits (166), Expect = 4e-31
Identities = 148/191 (77%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986
|| || ||||| || || | ||||| | ||||| |||||||||||||| ||||||||
Sbjct 17209 TTCTGAATGTTGTAGTCAGACAGGGTACGGCCATCCTCCAGCTGCTTGCCAGCGAAGATC 17150
Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046
||||| || ||||| || |||| || ||||||||||| ||||| || || || |||
Sbjct 17149 AGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCG 17090
Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAAC 211106
|| ||||| ||| ||||||||||| || |||||||| ||||| || ||||| || ||
Sbjct 17089 ATAGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTAAGGGTCTTGACGAAA 17030
Query 211107 ACCTGCATTTT 211117
| |||||| ||
Sbjct 17029 ATCTGCATCTT 17019
>seq61
Length=115161
Score = 145 bits (160), Expect = 2e-29
Identities = 154/203 (76%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
||||||||||| || |||||||| || |||||||| || || | || || | |||||
Sbjct 22278 AGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCC 22337
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| |||||||| || || ||||| | ||| || ||||| || |||| || |||||||||
Sbjct 22338 TCAAGCTGCTTACCAGCAAAGATCAAGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCC 22397
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|||||||| || ||||| ||||| ||||| || || ||||| || || || |||
Sbjct 22398 TGGATCTTGGACTTGACGTTGTCGATCGTGTCCGAAGACTCGACCTCCAGGGTAATGGTC 22457
Query 211083 TTTCCCGTGAGAGTCTTTACAAA 211105
|| ||||| || ||||| || ||
Sbjct 22458 TTACCCGTCAGGGTCTTGACGAA 22480
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1159137445397700
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |