Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20manginecans_20[genbank_20GCA_5F000712455.1_202014-06-
26] 980 sequences; 31,706,104 total letters
Query= NC_030230.1
Length=372707
Score E
Sequences producing significant alignments: (Bits) Value
seq28 140 8e-28
seq61 136 9e-27
seq100 107 5e-18
>seq28
Length=151797
Score = 140 bits (154), Expect = 8e-28
Identities = 164/222 (74%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551
||| || | ||| || | ||| ||||| || || || |||| ||||| |||| | ||
Sbjct 108999 ACGCAGACGCAGAACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGT 108940
Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611
| ||||| || |||||||| ||||||||||| || || || |||||||| || |||||
Sbjct 108939 GCGGCCATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCGGGAGGGATACC 108880
Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671
||||| || |||||||| ||| ||| || ||||| || |||| || || || |
Sbjct 108879 CTCCTTATCCTGGATCTTGGACTTGACATTGTCAATGGTATCAGAGGACTCGACTTCGAG 108820
Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
|| || |||||||||||||| || || | ||| | ||||||
Sbjct 108819 GGTAATGGTCTTGCCCGTCAAGGTCTTGACGAAGATTTGCAT 108778
Score = 125 bits (138), Expect = 2e-23
Identities = 161/222 (73%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551
||| || | ||| || | ||| ||||| |||||||| || | ||||| || | || ||
Sbjct 108771 ACGCAGACGCAGAACCAAGTGAAGAGTAGATTCTTTCTGAATGTTGTAGTCCGACAGGGT 108712
Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611
| ||||| || |||||||| ||||| || || || || || || || || || |||||
Sbjct 108711 ACGGCCATCCTCGAGCTGCTTTCCAGCAAAAATGAGACGCTGCTGATCCGGGGGGATACC 108652
Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671
||||| || |||||||| ||| ||| || ||||| || |||| || || || |
Sbjct 108651 CTCCTTATCCTGGATCTTGGACTTGACATTGTCAATGGTATCAGAGGACTCGACTTCGAG 108592
Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
|| || |||||||||||||| || || | ||| | ||||||
Sbjct 108591 GGTAATGGTCTTGCCCGTCAAGGTCTTGACGAAGATTTGCAT 108550
Score = 123 bits (136), Expect = 6e-23
Identities = 146/198 (74%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551
||| || | |||||| | ||| ||||| |||||||| || | ||||| |||| | ||
Sbjct 108543 ACGCAGACGCAGGACCAAGTGAAGAGTAGATTCTTTCTGAATGTTGTAGTCGGAAAGGGT 108484
Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611
| ||||| || |||||||| ||||||||||| || || || ||||| || ||||| ||
Sbjct 108483 ACGGCCATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGAATGCC 108424
Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671
|||||||| |||||||| ||| || || |||||||| |||| || || || |
Sbjct 108423 CTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTGTCGGAGGACTCGACTTCGAG 108364
Query 225672 CGTGATCGTCTTGCCCGT 225689
|| || ||||| || ||
Sbjct 108363 GGTAATGGTCTTTCCGGT 108346
Score = 122 bits (134), Expect = 2e-22
Identities = 141/190 (74%), Gaps = 0/190 (0%)
Strand=Plus/Minus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
|| || || |||||||| || || || || | ||||| |||| || || | |||||
Sbjct 108249 AGCACTAGATGGAGAGTAGACTCCTTCTGAATGTTGTAGTCGGACAGGGTGCGGCCATCC 108190
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| |||||||| ||||||||||| || || || ||||| || || ||||| ||||||||
Sbjct 108189 TCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGGATACCCTCCTTGTCC 108130
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
|||||||| ||| || || || || || |||| ||||| || | ||||| |||
Sbjct 108129 TGGATCTTAGACTTAACGTTGTCAATAGTATCCGAGGACTCCACCTCGAGGGTGATGGTC 108070
Query 225682 TTGCCCGTCA 225691
||||| ||||
Sbjct 108069 TTGCCAGTCA 108060
>seq61
Length=115161
Score = 136 bits (150), Expect = 9e-27
Identities = 158/213 (74%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551
||| || | ||||||||||||||| ||||| || || |||| ||||| |||| || |||
Sbjct 22268 ACGCAGGCGCAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGT 22327
Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611
| ||||| || |||||||| ||||| ||||| | || || ||||| || ||||| ||
Sbjct 22328 GCGGCCATCCTCAAGCTGCTTACCAGCAAAGATCAAGCGCTGCTGGTCCGGGGGAATGCC 22387
Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671
|||||||| |||||||| ||| || ||||| ||||| || | || || || |
Sbjct 22388 CTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATCGTGTCCGAAGACTCGACCTCCAG 22447
Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAA 225704
|| || ||||| ||||||| || || | |||
Sbjct 22448 GGTAATGGTCTTACCCGTCAGGGTCTTGACGAA 22480
>seq100
Length=89839
Score = 107 bits (118), Expect = 5e-18
Identities = 133/182 (73%), Gaps = 0/182 (0%)
Strand=Plus/Minus
Query 225535 TTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGT 225594
||||| || | || || | ||||| || |||||||| ||||||||||| || || ||
Sbjct 17200 TTGTAGTCAGACAGGGTACGGCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGC 17141
Query 225595 TGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCT 225654
||||| || ||||| || |||||||| || ||||| ||| ||| ||||| |||||
Sbjct 17140 TGGTCCGGGGGAATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCGATAGTGTCC 17081
Query 225655 GAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714
|||| || || || | || |||||||| ||||| | || || | ||| | |||||
Sbjct 17080 GAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTAAGGGTCTTGACGAAAATCTGCATC 17021
Query 225715 TT 225716
||
Sbjct 17020 TT 17019
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1192516226280120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |