Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20manginecans_20[genbank_20GCA_5F000712455.1_202014-06-
26] 980 sequences; 31,706,104 total letters
Query= NC_031465.1
Length=360610
Score E
Sequences producing significant alignments: (Bits) Value
seq28 118 2e-21
seq61 96.9 8e-15
seq100 84.2 5e-11
>seq28
Length=151797
Score = 118 bits (130), Expect = 2e-21
Identities = 154/210 (73%), Gaps = 5/210 (2%)
Strand=Plus/Minus
Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956
|||| |||||||||||||| || ||||||||||| |||| | || | ||||| || |
Sbjct 108984 CAAG-TGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCAA 108926
Query 151957 G--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTG 152014
| ||||| || |||||||| || | ||||||||| | | ||| || ||||| || ||
Sbjct 108925 GCTGCTTT--CCAGCGAAGATGAGACGCTGCTGGTCGGGAGGGATACCCTCCTTATCCTG 108868
Query 152015 AATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTT 152074
|| || |||||| | || | | | || || ||| ||||| || ||||| || ||
Sbjct 108867 GATCTTGGACTTGACATTGTCAATGGTATCAGAGGACTCGACTTCGAGGGTAATGGTCTT 108808
Query 152075 GCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
|||||| | ||||| ||||||| |||||
Sbjct 108807 GCCCGTCAAGGTCTTGACGAAGATTTGCAT 108778
Score = 100 bits (110), Expect = 7e-16
Identities = 150/210 (71%), Gaps = 5/210 (2%)
Strand=Plus/Minus
Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956
|||| ||||||||||| ||||| || |||||||| || | | || | ||||| || |
Sbjct 108756 CAAG-TGAAGAGTAGATTCTTTCTGAATGTTGTAGTCCGACAGGGTACGGCCATCCTCGA 108698
Query 151957 G--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTG 152014
| ||||| || || || || || | |||||| |||| | ||| || ||||| || ||
Sbjct 108697 GCTGCTTT--CCAGCAAAAATGAGACGCTGCTGATCCGGGGGGATACCCTCCTTATCCTG 108640
Query 152015 AATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTT 152074
|| || |||||| | || | | | || || ||| ||||| || ||||| || ||
Sbjct 108639 GATCTTGGACTTGACATTGTCAATGGTATCAGAGGACTCGACTTCGAGGGTAATGGTCTT 108580
Query 152075 GCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
|||||| | ||||| ||||||| |||||
Sbjct 108579 GCCCGTCAAGGTCTTGACGAAGATTTGCAT 108550
Score = 98.7 bits (108), Expect = 2e-15
Identities = 144/202 (71%), Gaps = 4/202 (2%)
Strand=Plus/Minus
Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952
||||| | ||||||||||| ||||| || |||||||| |||| | || | |||||
Sbjct 108533 AGGACCAAGTGAAGAGTAGATTCTTTCTGAATGTTGTAGTCGGAAAGGGTACGGCCATCC 108474
Query 151953 TCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010
|| || ||||| || |||||||| || | ||||||||||| | || || ||||| |
Sbjct 108473 TCAAGCTGCTTT--CCAGCGAAGATGAGACGCTGCTGGTCCGGAGGAATGCCCTCCTTGT 108416
Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAG 152070
| || || || ||||| | || | | |||| || ||| ||||| || ||||| |
Sbjct 108415 CCTGGATCTTGGACTTGACGTTGTCAATGGTGTCGGAGGACTCGACTTCGAGGGTAATGG 108356
Query 152071 TTTTGCCCGTGAGAGTCTTCAC 152092
| || || || || ||||| ||
Sbjct 108355 TCTTTCCGGTAAGGGTCTTGAC 108334
>seq61
Length=115161
Score = 96.9 bits (106), Expect = 8e-15
Identities = 143/203 (70%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952
|||||||| || || || ||||| || ||||||||||| |||| | ||| | |||||
Sbjct 22278 AGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCC 22337
Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012
|| || || || || ||||| | | ||||||||||| | || || ||||| ||
Sbjct 22338 TCAAGCTGCTTACCAGCAAAGATCAAGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCC 22397
Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072
|| || || ||||| | || | |||| ||| ||| || || || ||||| ||
Sbjct 22398 TGGATCTTGGACTTGACGTTGTCGATCGTGTCCGAAGACTCGACCTCCAGGGTAATGGTC 22457
Query 152073 TTGCCCGTGAGAGTCTTCACGAA 152095
|| ||||| || ||||| |||||
Sbjct 22458 TTACCCGTCAGGGTCTTGACGAA 22480
>seq100
Length=89839
Score = 84.2 bits (92), Expect = 5e-11
Identities = 133/191 (70%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 151917 TTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATA 151976
|| || |||||||| || | | || | ||||| || || || || ||||||||
Sbjct 17209 TTCTGAATGTTGTAGTCAGACAGGGTACGGCCATCCTCCAGCTGCTTGCCAGCGAAGATC 17150
Query 151977 AGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCT 152036
|| | ||||||||||| | || || ||||| || ||||| || |||||| | ||
Sbjct 17149 AGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCG 17090
Query 152037 ACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAG 152096
| |||| || ||| || || || ||||| || || ||||| || ||||| |||||
Sbjct 17089 ATAGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTAAGGGTCTTGACGAAA 17030
Query 152097 ACCTGCATTTT 152107
| |||||| ||
Sbjct 17029 ATCTGCATCTT 17019
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1153806312337580
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |