Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20manginecans_20[genbank_20GCA_5F000712455.1_202014-06- 26] 980 sequences; 31,706,104 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq28 118 2e-21 seq61 96.9 8e-15 seq100 84.2 5e-11 >seq28 Length=151797 Score = 118 bits (130), Expect = 2e-21 Identities = 154/210 (73%), Gaps = 5/210 (2%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| |||||||||||||| || ||||||||||| |||| | || | ||||| || | Sbjct 108984 CAAG-TGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCAA 108926 Query 151957 G--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTG 152014 | ||||| || |||||||| || | ||||||||| | | ||| || ||||| || || Sbjct 108925 GCTGCTTT--CCAGCGAAGATGAGACGCTGCTGGTCGGGAGGGATACCCTCCTTATCCTG 108868 Query 152015 AATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTT 152074 || || |||||| | || | | | || || ||| ||||| || ||||| || || Sbjct 108867 GATCTTGGACTTGACATTGTCAATGGTATCAGAGGACTCGACTTCGAGGGTAATGGTCTT 108808 Query 152075 GCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 |||||| | ||||| ||||||| ||||| Sbjct 108807 GCCCGTCAAGGTCTTGACGAAGATTTGCAT 108778 Score = 100 bits (110), Expect = 7e-16 Identities = 150/210 (71%), Gaps = 5/210 (2%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| ||||||||||| ||||| || |||||||| || | | || | ||||| || | Sbjct 108756 CAAG-TGAAGAGTAGATTCTTTCTGAATGTTGTAGTCCGACAGGGTACGGCCATCCTCGA 108698 Query 151957 G--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTG 152014 | ||||| || || || || || | |||||| |||| | ||| || ||||| || || Sbjct 108697 GCTGCTTT--CCAGCAAAAATGAGACGCTGCTGATCCGGGGGGATACCCTCCTTATCCTG 108640 Query 152015 AATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTT 152074 || || |||||| | || | | | || || ||| ||||| || ||||| || || Sbjct 108639 GATCTTGGACTTGACATTGTCAATGGTATCAGAGGACTCGACTTCGAGGGTAATGGTCTT 108580 Query 152075 GCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 |||||| | ||||| ||||||| ||||| Sbjct 108579 GCCCGTCAAGGTCTTGACGAAGATTTGCAT 108550 Score = 98.7 bits (108), Expect = 2e-15 Identities = 144/202 (71%), Gaps = 4/202 (2%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| | ||||||||||| ||||| || |||||||| |||| | || | ||||| Sbjct 108533 AGGACCAAGTGAAGAGTAGATTCTTTCTGAATGTTGTAGTCGGAAAGGGTACGGCCATCC 108474 Query 151953 TCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010 || || ||||| || |||||||| || | ||||||||||| | || || ||||| | Sbjct 108473 TCAAGCTGCTTT--CCAGCGAAGATGAGACGCTGCTGGTCCGGAGGAATGCCCTCCTTGT 108416 Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAG 152070 | || || || ||||| | || | | |||| || ||| ||||| || ||||| | Sbjct 108415 CCTGGATCTTGGACTTGACGTTGTCAATGGTGTCGGAGGACTCGACTTCGAGGGTAATGG 108356 Query 152071 TTTTGCCCGTGAGAGTCTTCAC 152092 | || || || || ||||| || Sbjct 108355 TCTTTCCGGTAAGGGTCTTGAC 108334 >seq61 Length=115161 Score = 96.9 bits (106), Expect = 8e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 |||||||| || || || ||||| || ||||||||||| |||| | ||| | ||||| Sbjct 22278 AGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCC 22337 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || || ||||| | | ||||||||||| | || || ||||| || Sbjct 22338 TCAAGCTGCTTACCAGCAAAGATCAAGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCC 22397 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || || ||||| | || | |||| ||| ||| || || || ||||| || Sbjct 22398 TGGATCTTGGACTTGACGTTGTCGATCGTGTCCGAAGACTCGACCTCCAGGGTAATGGTC 22457 Query 152073 TTGCCCGTGAGAGTCTTCACGAA 152095 || ||||| || ||||| ||||| Sbjct 22458 TTACCCGTCAGGGTCTTGACGAA 22480 >seq100 Length=89839 Score = 84.2 bits (92), Expect = 5e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 151917 TTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATA 151976 || || |||||||| || | | || | ||||| || || || || |||||||| Sbjct 17209 TTCTGAATGTTGTAGTCAGACAGGGTACGGCCATCCTCCAGCTGCTTGCCAGCGAAGATC 17150 Query 151977 AGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCT 152036 || | ||||||||||| | || || ||||| || ||||| || |||||| | || Sbjct 17149 AGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCG 17090 Query 152037 ACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAG 152096 | |||| || ||| || || || ||||| || || ||||| || ||||| ||||| Sbjct 17089 ATAGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTAAGGGTCTTGACGAAA 17030 Query 152097 ACCTGCATTTT 152107 | |||||| || Sbjct 17029 ATCTGCATCTT 17019 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153806312337580