Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20manginecans_20[genbank_20GCA_5F000712455.1_202014-06-
26] 980 sequences; 31,706,104 total letters
Query= NC_032001.1
Length=327147
Score E
Sequences producing significant alignments: (Bits) Value
seq61 183 6e-41
seq100 152 1e-31
seq28 152 1e-31
seq105 122 2e-22
seq161 86.0 1e-11
>seq61
Length=115161
Score = 183 bits (202), Expect = 6e-41
Identities = 172/219 (79%), Gaps = 0/219 (0%)
Strand=Plus/Plus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||||||||||||||| || || || || | ||| || || |||||||||||||| |
Sbjct 22262 ACCACCACGCAGGCGCAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 22321
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
|| |||||||||||||| || || || || ||||||||||| || || ||||| ||
Sbjct 22322 CAGAGTGCGGCCATCCTCAAGCTGCTTACCAGCAAAGATCAAGCGCTGCTGGTCCGGGGG 22381
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
||| ||||||||||| |||||||| | || ||| | ||||| |||||||||| |||||
Sbjct 22382 AATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATCGTGTCCGAAGACTCGAC 22441
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090
|| || || || ||||||||||||| ||||| |||||
Sbjct 22442 CTCCAGGGTAATGGTCTTACCCGTCAGGGTCTTGACGAA 22480
>seq100
Length=89839
Score = 152 bits (168), Expect = 1e-31
Identities = 153/199 (77%), Gaps = 0/199 (0%)
Strand=Plus/Minus
Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971
|| || ||||||||||||| || || ||||||||||| || || || || || ||||||
Sbjct 17209 TTCTGAATGTTGTAGTCAGACAGGGTACGGCCATCCTCCAGCTGCTTGCCAGCGAAGATC 17150
Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCG 283031
| || || ||||| ||||| ||||||||||| || ||||| | || || | |||
Sbjct 17149 AGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCG 17090
Query 283032 ATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAAT 283091
||||||||||| | || || ||||| || |||||||||||||| | ||||| |||||
Sbjct 17089 ATAGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTAAGGGTCTTGACGAAA 17030
Query 283092 ATCTGCATTTTCATATACA 283110
|||||||| || | ||||
Sbjct 17029 ATCTGCATCTTGACCTACA 17011
>seq28
Length=151797
Score = 152 bits (168), Expect = 1e-31
Identities = 170/227 (75%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932
||||||||||| || || |||| || | || || || |||||||||||||| |
Sbjct 109004 CCACCACGCAGACGCAGAACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAG 108945
Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992
|| |||||||||||||| || || || || || ||||| | ||| || ||||| ||
Sbjct 108944 AGGGTGCGGCCATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCGGGAGGG 108885
Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052
||||||||||| || |||||||| | || || | || || || || || | ||||||
Sbjct 108884 ATACCCTCCTTATCCTGGATCTTGGACTTGACATTGTCAATGGTATCAGAGGACTCGACT 108825
Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
||||| || || ||||| |||||||| ||||| ||||| || |||||
Sbjct 108824 TCGAGGGTAATGGTCTTGCCCGTCAAGGTCTTGACGAAGATTTGCAT 108778
Score = 150 bits (166), Expect = 4e-31
Identities = 170/228 (75%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
|||||||||||| || || |||| || | || |||||| || ||||||||||| |
Sbjct 108777 ACCACCACGCAGACGCAGAACCAAGTGAAGAGTAGATTCTTTCTGAATGTTGTAGTCCGA 108718
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
|| || ||||||||||| || || || || ||||| || | ||| || || || ||
Sbjct 108717 CAGGGTACGGCCATCCTCGAGCTGCTTTCCAGCAAAAATGAGACGCTGCTGATCCGGGGG 108658
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
||||||||||| || |||||||| | || || | || || || || || | |||||
Sbjct 108657 GATACCCTCCTTATCCTGGATCTTGGACTTGACATTGTCAATGGTATCAGAGGACTCGAC 108598
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
|||||| || || ||||| |||||||| ||||| ||||| || |||||
Sbjct 108597 TTCGAGGGTAATGGTCTTGCCCGTCAAGGTCTTGACGAAGATTTGCAT 108550
Score = 147 bits (162), Expect = 5e-30
Identities = 156/206 (76%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||||||||||||||| || || ||||| | || || || || ||||||||||| |
Sbjct 108265 ACCACCACGCAGGCGGAGCACTAGATGGAGAGTAGACTCCTTCTGAATGTTGTAGTCGGA 108206
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
|| |||||||||||||| || || || || || ||||| | ||| || ||||| ||
Sbjct 108205 CAGGGTGCGGCCATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGG 108146
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
|||||||||||||| |||||||| | || ||| | || ||||| ||||| | || ||
Sbjct 108145 GATACCCTCCTTGTCCTGGATCTTAGACTTAACGTTGTCAATAGTATCCGAGGACTCCAC 108086
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCA 283077
||||| ||||| ||||| || ||||
Sbjct 108085 CTCGAGGGTGATGGTCTTGCCAGTCA 108060
Score = 147 bits (162), Expect = 5e-30
Identities = 162/216 (75%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
|||||||||||| || || |||| || | || |||||| || ||||||||||| |
Sbjct 108549 ACCACCACGCAGACGCAGGACCAAGTGAAGAGTAGATTCTTTCTGAATGTTGTAGTCGGA 108490
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
||| || ||||||||||| || || || || || ||||| | ||| || ||||| ||
Sbjct 108489 AAGGGTACGGCCATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGG 108430
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
||| ||||||||||| |||||||| | || ||| | || || ||||| || | |||||
Sbjct 108429 AATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTGTCGGAGGACTCGAC 108370
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAAC 283087
|||||| || || ||||| || || | ||||| ||
Sbjct 108369 TTCGAGGGTAATGGTCTTTCCGGTAAGGGTCTTGAC 108334
>seq105
Length=86313
Score = 122 bits (134), Expect = 2e-22
Identities = 181/257 (70%), Gaps = 0/257 (0%)
Strand=Plus/Plus
Query 230154 GTGAAACAAATCGTCACAGAAGTAGTTGCAAATGAAAAGGAGTTCATTTGCGACGCTATT 230213
||| || | ||| |||| || | || | | || ||||||||| | ||| ||| |
Sbjct 44653 GTGCAAAAGATCATCACTGATGCCGTCGTGATCGAGAAGGAGTTCCTGACCGAGGCTCTG 44712
Query 230214 CCTTGCCGTCTTATCGGCATGAATGCTGATCTCATGGGGCAATATATCGAATTCGTAGCT 230273
|| ||| |||| | || ||||| |||||||| ||| ||| || || || || || |||
Sbjct 44713 CCCTGCGGTCTGCTAGGAATGAACGCTGATCTGATGAAGCAGTACATTGAGTTTGTTGCT 44772
Query 230274 GATCGTATTTTCGTGGCGCTAGGGTACGAGAAAGTGTATAACTCCAAGAACCCCTTCGCT 230333
|| || | | || || ||||| ||||||| ||||| ||| ||||||||||
Sbjct 44773 GACCGCCTGCTTGTTGCTCTAGGCAACGAGAAGGTGTACCGTGCCACAAACCCCTTCGAC 44832
Query 230334 TTTATGGAGCTCATTTCACTCCAGGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGCGAT 230393
|| |||||| ||| || ||| || || ||||||||||| || ||||||||| ||||
Sbjct 44833 TTCATGGAGAACATCTCGCTCGGCGGCAAGACTAACTTCTTTGAGAAGCGTGTCGGCGAC 44892
Query 230394 TATCAAAGGCCCGGTGT 230410
|| || | | | |||||
Sbjct 44893 TACCAGAAGGCTGGTGT 44909
>seq161
Length=64780
Score = 86.0 bits (94), Expect = 1e-11
Identities = 206/306 (67%), Gaps = 8/306 (3%)
Strand=Plus/Minus
Query 274494 TGGAAAAAGTTCATGACAAGACC--TGATATGTGAGTTCCGTCAACGTCGGCATCTGTCA 274551
|||| ||||| || | ||| || ||||||||||| || ||| || ||| | ||
Sbjct 57999 TGGAGGAAGTTGATCAAAAGTCCCTTGATATGTGAG--CCATCATGATCCTGATCAGCCA 57942
Query 274552 TGATCATAACATGTCCATACCGAAGCGAGGAAGTATCTTTATACAACTTCCCTGT--TTG 274609
||||||| | ||| ||||| ||||| ||||| |||| | || || ||| ||
Sbjct 57941 TGATCATGAGATGGCCATAACGAAGACTCTTGGTATCAGTATATA-CTGCCTTGTGCTTC 57883
Query 274610 AAGCCCAAGAATTTGCTTGAGAGCGGTGATTTCTTCGTTCTTTGTGATACTCGCCACAGA 274669
| ||||| || | |||||| | ||| || | |||||| ||||| ||| ||
Sbjct 57882 AGGCCCATAAACT-GCTTGATATTCTGGATCTCCTGGTTCTTGGTGATTTGGTCCAGCGA 57824
Query 274670 AGCATCACGTACGTTCAGCAACTTACCGCGGAGAGGGAAAACGCCATACCTTTCGCGCCC 274729
|||||||| || || |||| |||||| ||||||||||| || || | ||| | |
Sbjct 57823 TGCATCACGGACATTGAGCATCTTACCACGGAGAGGGAACACACCGATGCGGTCGGGGTC 57764
Query 274730 GATGACCGAAAGACCGGCGATCGCGAGAGTTGCTGCTGAATCTCCCTCTGTGAGAATCAA 274789
|| | || | | || || | || | | | ||||| || ||||| || ||||||||
Sbjct 57763 GAGAATCGCACGGCCTGCAACAGCCAAACTCTTGGCTGAGTCACCCTCAGTCAGAATCAA 57704
Query 274790 AGTACA 274795
||| ||
Sbjct 57703 AGTGCA 57698
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1046726056880920
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