Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20manginecans_20[genbank_20GCA_5F000712455.1_202014-06- 26] 980 sequences; 31,706,104 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq61 183 6e-41 seq100 152 1e-31 seq28 152 1e-31 seq105 122 2e-22 seq161 86.0 1e-11 >seq61 Length=115161 Score = 183 bits (202), Expect = 6e-41 Identities = 172/219 (79%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||||||||| || || || || | ||| || || |||||||||||||| | Sbjct 22262 ACCACCACGCAGGCGCAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 22321 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || |||||||||||||| || || || || ||||||||||| || || ||||| || Sbjct 22322 CAGAGTGCGGCCATCCTCAAGCTGCTTACCAGCAAAGATCAAGCGCTGCTGGTCCGGGGG 22381 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| ||||||||||| |||||||| | || ||| | ||||| |||||||||| ||||| Sbjct 22382 AATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATCGTGTCCGAAGACTCGAC 22441 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090 || || || || ||||||||||||| ||||| ||||| Sbjct 22442 CTCCAGGGTAATGGTCTTACCCGTCAGGGTCTTGACGAA 22480 >seq100 Length=89839 Score = 152 bits (168), Expect = 1e-31 Identities = 153/199 (77%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971 || || ||||||||||||| || || ||||||||||| || || || || || |||||| Sbjct 17209 TTCTGAATGTTGTAGTCAGACAGGGTACGGCCATCCTCCAGCTGCTTGCCAGCGAAGATC 17150 Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCG 283031 | || || ||||| ||||| ||||||||||| || ||||| | || || | ||| Sbjct 17149 AGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCG 17090 Query 283032 ATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAAT 283091 ||||||||||| | || || ||||| || |||||||||||||| | ||||| ||||| Sbjct 17089 ATAGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTAAGGGTCTTGACGAAA 17030 Query 283092 ATCTGCATTTTCATATACA 283110 |||||||| || | |||| Sbjct 17029 ATCTGCATCTTGACCTACA 17011 >seq28 Length=151797 Score = 152 bits (168), Expect = 1e-31 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||||||||| || || |||| || | || || || |||||||||||||| | Sbjct 109004 CCACCACGCAGACGCAGAACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAG 108945 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || |||||||||||||| || || || || || ||||| | ||| || ||||| || Sbjct 108944 AGGGTGCGGCCATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCGGGAGGG 108885 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 ||||||||||| || |||||||| | || || | || || || || || | |||||| Sbjct 108884 ATACCCTCCTTATCCTGGATCTTGGACTTGACATTGTCAATGGTATCAGAGGACTCGACT 108825 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| || || ||||| |||||||| ||||| ||||| || ||||| Sbjct 108824 TCGAGGGTAATGGTCTTGCCCGTCAAGGTCTTGACGAAGATTTGCAT 108778 Score = 150 bits (166), Expect = 4e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||||||||| || || |||| || | || |||||| || ||||||||||| | Sbjct 108777 ACCACCACGCAGACGCAGAACCAAGTGAAGAGTAGATTCTTTCTGAATGTTGTAGTCCGA 108718 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || ||||||||||| || || || || ||||| || | ||| || || || || Sbjct 108717 CAGGGTACGGCCATCCTCGAGCTGCTTTCCAGCAAAAATGAGACGCTGCTGATCCGGGGG 108658 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||||||||||| || |||||||| | || || | || || || || || | ||||| Sbjct 108657 GATACCCTCCTTATCCTGGATCTTGGACTTGACATTGTCAATGGTATCAGAGGACTCGAC 108598 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 |||||| || || ||||| |||||||| ||||| ||||| || ||||| Sbjct 108597 TTCGAGGGTAATGGTCTTGCCCGTCAAGGTCTTGACGAAGATTTGCAT 108550 Score = 147 bits (162), Expect = 5e-30 Identities = 156/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||||||||| || || ||||| | || || || || ||||||||||| | Sbjct 108265 ACCACCACGCAGGCGGAGCACTAGATGGAGAGTAGACTCCTTCTGAATGTTGTAGTCGGA 108206 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || |||||||||||||| || || || || || ||||| | ||| || ||||| || Sbjct 108205 CAGGGTGCGGCCATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGG 108146 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 |||||||||||||| |||||||| | || ||| | || ||||| ||||| | || || Sbjct 108145 GATACCCTCCTTGTCCTGGATCTTAGACTTAACGTTGTCAATAGTATCCGAGGACTCCAC 108086 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCA 283077 ||||| ||||| ||||| || |||| Sbjct 108085 CTCGAGGGTGATGGTCTTGCCAGTCA 108060 Score = 147 bits (162), Expect = 5e-30 Identities = 162/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||||||||| || || |||| || | || |||||| || ||||||||||| | Sbjct 108549 ACCACCACGCAGACGCAGGACCAAGTGAAGAGTAGATTCTTTCTGAATGTTGTAGTCGGA 108490 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| || ||||||||||| || || || || || ||||| | ||| || ||||| || Sbjct 108489 AAGGGTACGGCCATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGG 108430 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| ||||||||||| |||||||| | || ||| | || || ||||| || | ||||| Sbjct 108429 AATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTGTCGGAGGACTCGAC 108370 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAAC 283087 |||||| || || ||||| || || | ||||| || Sbjct 108369 TTCGAGGGTAATGGTCTTTCCGGTAAGGGTCTTGAC 108334 >seq105 Length=86313 Score = 122 bits (134), Expect = 2e-22 Identities = 181/257 (70%), Gaps = 0/257 (0%) Strand=Plus/Plus Query 230154 GTGAAACAAATCGTCACAGAAGTAGTTGCAAATGAAAAGGAGTTCATTTGCGACGCTATT 230213 ||| || | ||| |||| || | || | | || ||||||||| | ||| ||| | Sbjct 44653 GTGCAAAAGATCATCACTGATGCCGTCGTGATCGAGAAGGAGTTCCTGACCGAGGCTCTG 44712 Query 230214 CCTTGCCGTCTTATCGGCATGAATGCTGATCTCATGGGGCAATATATCGAATTCGTAGCT 230273 || ||| |||| | || ||||| |||||||| ||| ||| || || || || || ||| Sbjct 44713 CCCTGCGGTCTGCTAGGAATGAACGCTGATCTGATGAAGCAGTACATTGAGTTTGTTGCT 44772 Query 230274 GATCGTATTTTCGTGGCGCTAGGGTACGAGAAAGTGTATAACTCCAAGAACCCCTTCGCT 230333 || || | | || || ||||| ||||||| ||||| ||| |||||||||| Sbjct 44773 GACCGCCTGCTTGTTGCTCTAGGCAACGAGAAGGTGTACCGTGCCACAAACCCCTTCGAC 44832 Query 230334 TTTATGGAGCTCATTTCACTCCAGGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGCGAT 230393 || |||||| ||| || ||| || || ||||||||||| || ||||||||| |||| Sbjct 44833 TTCATGGAGAACATCTCGCTCGGCGGCAAGACTAACTTCTTTGAGAAGCGTGTCGGCGAC 44892 Query 230394 TATCAAAGGCCCGGTGT 230410 || || | | | ||||| Sbjct 44893 TACCAGAAGGCTGGTGT 44909 >seq161 Length=64780 Score = 86.0 bits (94), Expect = 1e-11 Identities = 206/306 (67%), Gaps = 8/306 (3%) Strand=Plus/Minus Query 274494 TGGAAAAAGTTCATGACAAGACC--TGATATGTGAGTTCCGTCAACGTCGGCATCTGTCA 274551 |||| ||||| || | ||| || ||||||||||| || ||| || ||| | || Sbjct 57999 TGGAGGAAGTTGATCAAAAGTCCCTTGATATGTGAG--CCATCATGATCCTGATCAGCCA 57942 Query 274552 TGATCATAACATGTCCATACCGAAGCGAGGAAGTATCTTTATACAACTTCCCTGT--TTG 274609 ||||||| | ||| ||||| ||||| ||||| |||| | || || ||| || Sbjct 57941 TGATCATGAGATGGCCATAACGAAGACTCTTGGTATCAGTATATA-CTGCCTTGTGCTTC 57883 Query 274610 AAGCCCAAGAATTTGCTTGAGAGCGGTGATTTCTTCGTTCTTTGTGATACTCGCCACAGA 274669 | ||||| || | |||||| | ||| || | |||||| ||||| ||| || Sbjct 57882 AGGCCCATAAACT-GCTTGATATTCTGGATCTCCTGGTTCTTGGTGATTTGGTCCAGCGA 57824 Query 274670 AGCATCACGTACGTTCAGCAACTTACCGCGGAGAGGGAAAACGCCATACCTTTCGCGCCC 274729 |||||||| || || |||| |||||| ||||||||||| || || | ||| | | Sbjct 57823 TGCATCACGGACATTGAGCATCTTACCACGGAGAGGGAACACACCGATGCGGTCGGGGTC 57764 Query 274730 GATGACCGAAAGACCGGCGATCGCGAGAGTTGCTGCTGAATCTCCCTCTGTGAGAATCAA 274789 || | || | | || || | || | | | ||||| || ||||| || |||||||| Sbjct 57763 GAGAATCGCACGGCCTGCAACAGCCAAACTCTTGGCTGAGTCACCCTCAGTCAGAATCAA 57704 Query 274790 AGTACA 274795 ||| || Sbjct 57703 AGTGCA 57698 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046726056880920