Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20manginecans_20[genbank_20GCA_5F000712455.1_202014-06- 26] 980 sequences; 31,706,104 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq100 152 5e-32 seq61 132 4e-26 seq28 113 4e-20 >seq100 Length=89839 Score = 152 bits (168), Expect = 5e-32 Identities = 154/196 (79%), Gaps = 6/196 (3%) Strand=Plus/Minus Query 41673 CCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 41732 ||||||||||||| ||||| || ||||| || | || || ||||||||||| ||||| | Sbjct 17211 CCTTCTGAATGTTGTAGTCAGACAGGGTACGGCCATCCTCCAGCTGCTTGCCAGCGAAGA 17152 Query 41733 TCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTG-CTT--CAACG 41789 |||||||||| ||||||| ||||| || |||||||||| ||| | || | ||| || | Sbjct 17151 TCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCC-TGAATCTTGGACTTGACATTG 17093 Query 41790 ACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTA 41849 || | |||||| ||||| ||||| | || ||||| |||||||| || ||||| | Sbjct 17092 TCG--ATAGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTAAGGGTCTTGA 17035 Query 41850 CGAAAATCTGCATGTT 41865 ||||||||||||| || Sbjct 17034 CGAAAATCTGCATCTT 17019 >seq61 Length=115161 Score = 132 bits (146), Expect = 4e-26 Identities = 163/220 (74%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | || || || || ||| ||||||||| ||||| |||||||| Sbjct 22263 CCACCACGCAGGCGCAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 22322 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| | || || |||||||| || || || |||| |||||| ||||||| |||| Sbjct 22323 AGAGTGCGGCCATCCTCAAGCTGCTTACCAGCAAAGATCAAGCGCTGCTGGTCCGGGGGA 22382 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || |||||||||| ||| || ||| | || | | | ||||| ||||| || Sbjct 22383 ATGCCCTCCTTGTCCTGGATCTTGGACTTGA-CGTTGTCGATCGTGTCCGAAGACTCGAC 22441 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAA 41854 ||||| || || || ||||||||||| ||||| |||||| Sbjct 22442 CTCCAGGGTAATGGTCTTACCCGTCAGGGTCTTGACGAAA 22481 >seq28 Length=151797 Score = 113 bits (124), Expect = 4e-20 Identities = 150/206 (73%), Gaps = 2/206 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | ||| ||||| || || ||||||||||||||| |||||||| Sbjct 108264 CCACCACGCAGGCGGAGCACTAGATGGAGAGTAGACTCCTTCTGAATGTTGTAGTCGGAC 108205 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| | || || |||||||| || ||||| || || ||||| ||||||| || Sbjct 108204 AGGGTGCGGCCATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGG 108145 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | |||||||||| ||| || ||| |||| | | | ||| || |||||||| Sbjct 108144 ATACCCTCCTTGTCCTGGATCTTAGACTT-AACGTTGTCAATAGTATCCGAGGACTCCAC 108086 Query 41815 CTCCACCGTTATCGTTTTACCCGTCA 41840 ||| | || || || || || |||| Sbjct 108085 CTCGAGGGTGATGGTCTTGCCAGTCA 108060 Score = 100 bits (110), Expect = 3e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| | |||| || || || ||||||||| ||||| |||||||| Sbjct 109005 GCCACCACGCAGACGCAGAACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGGA 108946 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||||||||| | || || |||||||| || ||||| || || ||||| ||||| | || Sbjct 108945 GAGGGTGCGGCCATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCGGGAGG 108886 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 | | |||||| ||| ||| || ||| || | | | || || ||||| | Sbjct 108885 GATACCCTCCTTATCCTGGATCTTGGACTT-GACATTGTCAATGGTATCAGAGGACTCGA 108827 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 | || | || || || || ||||||| ||||| ||||| || ||||| Sbjct 108826 CTTCGAGGGTAATGGTCTTGCCCGTCAAGGTCTTGACGAAGATTTGCAT 108778 Score = 98.7 bits (108), Expect = 9e-16 Identities = 153/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | |||| || || || || ||||||||||| |||||||| Sbjct 108548 CCACCACGCAGACGCAGGACCAAGTGAAGAGTAGATTCTTTCTGAATGTTGTAGTCGGAA 108489 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| || | || || |||||||| || ||||| || || ||||| ||||||| ||| Sbjct 108488 AGGGTACGGCCATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGA 108429 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || |||||||||| ||| || ||| ||| | | | |||||| ||||| || Sbjct 108428 ATGCCCTCCTTGTCCTGGATCTTGGACTT-GACGTTGTCAATGGTGTCGGAGGACTCGAC 108370 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTAC 41850 || | || || || || || || || ||||| || Sbjct 108369 TTCGAGGGTAATGGTCTTTCCGGTAAGGGTCTTGAC 108334 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462298336776000