Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20platani_20[genbank_20GCA_5F000978885.1_202015-04-23]
1,213 sequences; 29,181,415 total letters
Query= NC_001611.1
Length=185578
Score E
Sequences producing significant alignments: (Bits) Value
seq411 143 3e-29
>seq411
Length=11963
Score = 143 bits (158), Expect = 3e-29
Identities = 463/712 (65%), Gaps = 30/712 (4%)
Strand=Plus/Minus
Query 53976 CCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTC---ACTC 54032
|||| || || ||||||| || ||||| | | ||| || |||| |||| || |
Sbjct 7213 CCAAGCCGGGGCATTCATTGGGGCACATGAGAGTCCAGTCC---TCATTCTTCTCAACAC 7157
Query 54033 GTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCT 54092
| ||||| || | || ||||| || || | ||||| || | | | ||| |
Sbjct 7156 GCTTCATGAACAAGTCGCAGATCCACAGGGCCAAGAATAGGTCACGAGCACGGACTTCTT 7097
Query 54093 CGTTTCCTGTATTCTTTT-TAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCC 54151
| ||||| ||||| |||| ||||||||| | | | ||||| |||||| || ||
Sbjct 7096 CCTTTCCGTGGTTCTTGCGTAAG-TCGAGGAACTCGAAGACATCAGCATGCCATGGCTCG 7038
Query 54152 AAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTG 54211
| || |||| | ||||||| || |||||||| ||||| || | || | ||||||
Sbjct 7037 AGATAAATGGCAAAGGCTCCAGGTCGCTTGTTTCCACCCTGGTCAACATAACGGGCGGTG 6978
Query 54212 TTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATA 54271
|| || |||| | | ||| |||| || || || || | ||| || || || | ||
Sbjct 6977 TTGTTGAAAACACGTAGCATGGGAACGATGCCGTTCGAAGTACCGTTAGTGCCAGCAATG 6918
Query 54272 TAGCTTCCACTGGCACGAATA--TTACTAATTGATAGACCTATCCCCCCTGCCATTTTAG 54329
|| ||| ||||||||||| | |||| ||||| || || || ||||| || |
Sbjct 6917 TAAGAGCCAGTGGCACGAATACGGTGAACATTG--AGACCGATACCACCAGCCATCTTGG 6860
Query 54330 AGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGT 54389
| || | || || || | ||||| || |||||||| || || |||||| ||||||
Sbjct 6859 AAATCATGGCACAAGTCTTGAGGGTATCGTAAATGCCCTCGATGCTGTCATCCTTCATGT 6800
Query 54390 TAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAG 54449
| ||| ||||| ||||| || | ||| || |||||||| | ||||| |
Sbjct 6799 CGACTAGGAAACATGAAGACAACTGAGCCTGGGGAGTACCGGCATTAAAGAGCGTAGGTG 6740
Query 54450 AAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGT--------CTCGATAG-CTG 54500
| ||||| || || | || ||| | || ||||| || | |||| | ||
Sbjct 6739 ATGCGTGAGTGAAGAACTTGCTAGACATAAGGTTGTAGGTTTCAAGCACACGATCGACTT 6680
Query 54501 AGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTT 54560
||| | |||| ||| || || || |||||||||| ||||||||| || | |
Sbjct 6679 TGTC---ACCCCA------AATACCCACAGCAACACGCATTATCATGTGCTGGGGACGCT 6629
Query 54561 CAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAAT 54620
|||| ||||| | | ||| || | ||| || || | || ||||| ||||| |
Sbjct 6628 CAACAATCTTACCATCAAGTTTGAGTAGGTACGAACGCTCGAGCGTCTTAAAGCCAAAGT 6569
Query 54621 AGTTGTATGAAAAGTCTCGTTCGTAAATAATAACTGAGTTGAGTTTATCCTT 54672
| | ||| ||||| || ||||| | ||| | |||| || | ||||||
Sbjct 6568 ACTGGTAGTTGAAGTCACGGTCGTACACAATGGCAGAGTCCAGCTCATCCTT 6517
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 593712597696240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |