Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20platani_20[genbank_20GCA_5F000978885.1_202015-04-23] 1,213 sequences; 29,181,415 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq411 143 3e-29 >seq411 Length=11963 Score = 143 bits (158), Expect = 3e-29 Identities = 463/712 (65%), Gaps = 30/712 (4%) Strand=Plus/Minus Query 53976 CCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTC---ACTC 54032 |||| || || ||||||| || ||||| | | ||| || |||| |||| || | Sbjct 7213 CCAAGCCGGGGCATTCATTGGGGCACATGAGAGTCCAGTCC---TCATTCTTCTCAACAC 7157 Query 54033 GTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCT 54092 | ||||| || | || ||||| || || | ||||| || | | | ||| | Sbjct 7156 GCTTCATGAACAAGTCGCAGATCCACAGGGCCAAGAATAGGTCACGAGCACGGACTTCTT 7097 Query 54093 CGTTTCCTGTATTCTTTT-TAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCC 54151 | ||||| ||||| |||| ||||||||| | | | ||||| |||||| || || Sbjct 7096 CCTTTCCGTGGTTCTTGCGTAAG-TCGAGGAACTCGAAGACATCAGCATGCCATGGCTCG 7038 Query 54152 AAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTG 54211 | || |||| | ||||||| || |||||||| ||||| || | || | |||||| Sbjct 7037 AGATAAATGGCAAAGGCTCCAGGTCGCTTGTTTCCACCCTGGTCAACATAACGGGCGGTG 6978 Query 54212 TTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATA 54271 || || |||| | | ||| |||| || || || || | ||| || || || | || Sbjct 6977 TTGTTGAAAACACGTAGCATGGGAACGATGCCGTTCGAAGTACCGTTAGTGCCAGCAATG 6918 Query 54272 TAGCTTCCACTGGCACGAATA--TTACTAATTGATAGACCTATCCCCCCTGCCATTTTAG 54329 || ||| ||||||||||| | |||| ||||| || || || ||||| || | Sbjct 6917 TAAGAGCCAGTGGCACGAATACGGTGAACATTG--AGACCGATACCACCAGCCATCTTGG 6860 Query 54330 AGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGT 54389 | || | || || || | ||||| || |||||||| || || |||||| |||||| Sbjct 6859 AAATCATGGCACAAGTCTTGAGGGTATCGTAAATGCCCTCGATGCTGTCATCCTTCATGT 6800 Query 54390 TAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAG 54449 | ||| ||||| ||||| || | ||| || |||||||| | ||||| | Sbjct 6799 CGACTAGGAAACATGAAGACAACTGAGCCTGGGGAGTACCGGCATTAAAGAGCGTAGGTG 6740 Query 54450 AAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGT--------CTCGATAG-CTG 54500 | ||||| || || | || ||| | || ||||| || | |||| | || Sbjct 6739 ATGCGTGAGTGAAGAACTTGCTAGACATAAGGTTGTAGGTTTCAAGCACACGATCGACTT 6680 Query 54501 AGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTT 54560 ||| | |||| ||| || || || |||||||||| ||||||||| || | | Sbjct 6679 TGTC---ACCCCA------AATACCCACAGCAACACGCATTATCATGTGCTGGGGACGCT 6629 Query 54561 CAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAAT 54620 |||| ||||| | | ||| || | ||| || || | || ||||| ||||| | Sbjct 6628 CAACAATCTTACCATCAAGTTTGAGTAGGTACGAACGCTCGAGCGTCTTAAAGCCAAAGT 6569 Query 54621 AGTTGTATGAAAAGTCTCGTTCGTAAATAATAACTGAGTTGAGTTTATCCTT 54672 | | ||| ||||| || ||||| | ||| | |||| || | |||||| Sbjct 6568 ACTGGTAGTTGAAGTCACGGTCGTACACAATGGCAGAGTCCAGCTCATCCTT 6517 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593712597696240