Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20platani_20[genbank_20GCA_5F000978885.1_202015-04-23]
1,213 sequences; 29,181,415 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq101 300 2e-76
seq338 127 2e-24
seq145 123 3e-23
seq64 113 5e-20
>seq101
Length=72697
Score = 300 bits (332), Expect = 2e-76
Identities = 517/739 (70%), Gaps = 19/739 (3%)
Strand=Plus/Minus
Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695
|| |||| |||||||| ||||||||||| || |||||||| | |||||| | || ||
Sbjct 41555 ATCTGGCAGATGTACAAGAAGGCCGAGGCCTCCTTCTGGACTGCTGAGGAGATTGATCTC 41496
Query 116696 TCCAAGGA-CACGAGCGACTGGGAG---CGCTTGAACGACAACGAGCGCCATTTCATCAA 116751
|| ||||| | | | ||||||| | || ||||| | |||||| | ||||||
Sbjct 41495 TCTAAGGATCTCCA-CGACTGGAACAACCGTCTGAACAAAGACGAGCAGTACTTCATCTC 41437
Query 116752 GCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCG 116811
||| | || ||||| || || ||| || |||||||||||||| ||||| || |||||
Sbjct 41436 CCACATTCTTGCCTTCTTTGCTGCCTCTGATGGCATCGTCAACGAAAATCTCGTTGAGCG 41377
Query 116812 TTTCGCTCAGG--AGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCC 116869
||| ||||| |||||||| | ||||||| || ||||||||||| || ||||||
Sbjct 41376 CTTC--TCAGGCGAGGTGCAGATCCCCGAGGCCCGCTGCTTCTACGGTTTCCAGATCATG 41319
Query 116870 ATGGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGT----GCGCTC 116925
||||| ||| | ||||| |||| || ||| || || ||||| ||| | | || |
Sbjct 41318 ATGGAAAACATCCACTCTGAAACCTACTCGCTGCTGATTGACACCTACATCAAGGAGC-C 41260
Query 116926 TTCGGAGGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAA 116985
||| | | | | | |||| || ||||| || || || || ||| || ||
Sbjct 41259 CTCGCA-ACGCACATAC--CTGTTCAATGCCATTGACACTATTCCCTGCATCCGCCGCAA 41203
Query 116986 GGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGT 117045
|||||| ||||| ||| |||||| ||| || ||| | | || | | ||||||| ||
Sbjct 41202 GGCCGACTGGGCTCTGAAGTGGATCACCGACAAGGAGTCGACGTTTGCCCAGCGCCTAGT 41143
Query 117046 GGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCT 117105
||||| || || ||||||||| |||| || || ||| |||||| |||| || |||||
Sbjct 41142 TGCCTTTGCTGCTGTCGAGGGCATCTTTTTCTCAGGCGCCTTCGCCTCCATCTTCTGGCT 41083
Query 117106 CAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGA 117165
|| || || |||||||| || ||||| ||| |||||||| || || | || ||
Sbjct 41082 GCGCAAGCGTGGTCTCATGCCTGGTCTGACCTTCTCAAACGAGCTTATTTCTCGTGATGA 41023
Query 117166 GGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGC 117225
||| ||||| ||||||||| || |||||||| |||| || | || || |||
Sbjct 41022 GGGCCTGCACACCGACTTTGCTTGCCTGCTGTTCTCGCATCTGAACAACCGCCCCAGCAA 40963
Query 117226 GGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGA 117285
|| | || ||||| |||| || || |||| |||||| || ||||| |||||
Sbjct 40962 GGACCTTGTGCAAAAGATCATCACTGATGCCGTCGTGATCGAGAAGGAGTTCCTGACCGA 40903
Query 117286 AGCGCTGCCGGTGC-GTCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACATCGAGT 117344
|| ||||| ||| ||||||| ||| | || ||| |||| ||| ||||| ||||
Sbjct 40902 GGCTCTGCC-CTGCGGTCTGCTAGGAATGAACGCCGATCTGATGAAGCAGTACATTGAGT 40844
Query 117345 TCGTCGCCGACAGGCTGCT 117363
| || || ||| | || ||
Sbjct 40843 TTGTTGCTGACCGCCTACT 40825
>seq338
Length=64627
Score = 127 bits (140), Expect = 2e-24
Identities = 150/203 (74%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
|||||||| ||||| || || | |||||||| ||||| ||| |||| ||||| || |
Sbjct 52239 ATGCAAATCTTCGTCAAGACCTTGACGGGCAAGACCATTACCCTCGAAGTCGAGTCCTCT 52180
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|| | | | | | |||| || || | ||||| ||||| ||||| |||| |||
Sbjct 52179 GATACCATTGACAATGTCAAATCCAAGATCCAGGACAAGGAGGGTATCCCTCCGGATCAG 52120
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
|| || ||||||| ||| || || ||||| || || | ||||||||| ||||||||||
Sbjct 52119 CAGCGTCTCATCTTCGCCGGAAAGCAGCTTGAGGATGGCCGCACCCTCTCCGACTACAAC 52060
Query 40870 ATCCAGAAGGAGGCCACGCTGCA 40892
|||||||||||| | || || ||
Sbjct 52059 ATCCAGAAGGAGTCTACTCTTCA 52037
Score = 114 bits (126), Expect = 1e-20
Identities = 135/180 (75%), Gaps = 2/180 (1%)
Strand=Plus/Minus
Query 40702 GTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA- 40760
|| || || || || || || ||||| ||| |||| ||||| || |||||| | | |
Sbjct 52683 GTCAAGACCCTTACCGGAAAGACCATTACCCTCGAAGTCGAGTCCTCCGACACCATTGAC 52624
Query 40761 AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCAT 40820
|||| ||||| || || | ||||| ||||| ||||| |||||||||| || |||||
Sbjct 52623 AACG-TCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCTCCGGACCAGCAGCGTCTCAT 52565
Query 40821 CTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGA 40880
|| ||| || || ||||| || || | ||||||||| |||||||||||| ||||| ||
Sbjct 52564 CTTCGCCGGAAAGCAGCTTGAGGATGGCCGCACCCTCTCCGACTACAACATTCAGAAAGA 52505
Score = 113 bits (124), Expect = 5e-20
Identities = 149/204 (73%), Gaps = 2/204 (1%)
Strand=Plus/Minus
Query 40714 ACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAAGGA 40772
|| ||||| ||||||||| |||| || || | | || | | | |||| | |||
Sbjct 52955 ACTGGCAAGACCATCACCCTCGAGGTGGAGTCTTCGGATACTATTGACAACGTT-AAGTC 52897
Query 40773 AAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAA 40832
|| || | ||||| ||||| ||||| |||||||||| || ||||||| ||| || ||
Sbjct 52896 TAAGATCCAGGACAAGGAGGGTATCCCTCCGGACCAGCAGCGTCTCATCTTCGCTGGAAA 52837
Query 40833 ACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCA 40892
||||| || || | |||||||| |||||||||||| ||||||||| | || || ||
Sbjct 52836 GCAGCTTGAGGATGGCCGCACCCTGTCCGACTACAACATTCAGAAGGAGTCTACTCTCCA 52777
Query 40893 TCTAGTGTTGCGCTTGAGGGGCGG 40916
||||||| | ||| || | || ||
Sbjct 52776 TCTAGTGCTCCGCCTGCGTGGTGG 52753
Score = 96.9 bits (106), Expect = 4e-15
Identities = 136/191 (71%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
|||||||| ||||| || || | |||||||| ||||| ||| |||| ||||| || |
Sbjct 52467 ATGCAAATCTTCGTCAAGACCTTGACGGGCAAGACCATTACCCTCGAAGTCGAGTCCTCT 52408
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|| | | | | | ||||| || || | || || ||||| |||||| |||| |||
Sbjct 52407 GATACCATTGACAATGTCAAGTCCAAGATCCAGGATAAGGAGGGTATCCCCCCGGATCAG 52348
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
|| || ||||| | || || || ||||| || || | || ||||| |||||||||
Sbjct 52347 CAGCGTCTCATTTTTGCTGGAAAGCAGCTCGAGGATGGCCGTACCCTTTCGGACTACAAC 52288
Query 40870 ATCCAGAAGGA 40880
|| ||||| ||
Sbjct 52287 ATTCAGAAAGA 52277
>seq145
Length=91869
Score = 123 bits (136), Expect = 3e-23
Identities = 143/193 (74%), Gaps = 0/193 (0%)
Strand=Plus/Minus
Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746
|| ||||| || ||||| || || || ||||| || || || ||| |||| || || ||
Sbjct 6212 AAGATGCAGATTTTCGTCAAGACCCTTACGGGTAAGACGATTACCCTCGAGGTTGAGTCC 6153
Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806
| |||| | | | | ||||| || |||| ||||| |||||||| ||| |||||
Sbjct 6152 TCGGACACCATCGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGCATTCCCCCGGAC 6093
Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866
||||| || || |||| ||| ||||| |||||||| || | |||||||| ||||||
Sbjct 6092 CAGCAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGCCGCACCCTGTCTGACTAC 6033
Query 40867 AACATCCAGAAGG 40879
||||| |||||||
Sbjct 6032 AACATTCAGAAGG 6020
>seq64
Length=146407
Score = 113 bits (124), Expect = 5e-20
Identities = 158/219 (72%), Gaps = 2/219 (1%)
Strand=Plus/Plus
Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758
||||| || || || ||||| || ||||| ||| | || ||||| | | |||| |
Sbjct 70747 TTCGTCAAGACCCTGACGGGTAAGACCATTACCCTGGAGGTCGAGTCTTCGGACACGATC 70806
Query 40759 CA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACT 40817
| |||| ||||| || || | ||||| |||||||| ||| |||||||||| || |
Sbjct 70807 GACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGCTT 70865
Query 40818 CATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAA 40877
|||| || || || ||||| || || | ||||| || ||||||||||||||||||
Sbjct 70866 GATCTTTGCTGGTAAGCAGCTTGAGGATGGCCGCACTCTGTCCGACTACAACATCCAGAA 70925
Query 40878 GGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916
|||| |||| || || || || ||||| || | || ||
Sbjct 70926 GGAGTCCACCCTCCACCTTGTCCTGCGCCTGCGTGGTGG 70964
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515211387988880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |