Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20platani_20[genbank_20GCA_5F000978885.1_202015-04-23]
1,213 sequences; 29,181,415 total letters
Query= NC_002169.1
Length=135611
Score E
Sequences producing significant alignments: (Bits) Value
seq338 129 5e-25
seq145 123 2e-23
seq64 102 7e-17
>seq338
Length=64627
Score = 129 bits (142), Expect = 5e-25
Identities = 154/209 (74%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589
|||||||| | |||||||| || || |||||||| ||| | ||||| ||||||
Sbjct 52031 ACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCA 52090
Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649
||||| ||||| ||| ||||||||||||||||||| ||||| || |||||||||||
Sbjct 52091 AGCTGCTTTCCGGCGAAGATGAGACGCTGCTGATCCGGAGGGATACCCTCCTTGTCCTGG 52150
Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709
|| || ||| || | || | ||| || | | |||||| |||| ||| | || |||
Sbjct 52151 ATCTTGGATTTGACATTGTCAATGGTATCAGAGGACTCGACTTCGAGGGTAATGGTCTTG 52210
Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
|| |||| || || || || || |||||
Sbjct 52211 CCCGTCAAGGTCTTGACGAAGATTTGCAT 52239
Score = 125 bits (138), Expect = 6e-24
Identities = 147/199 (74%), Gaps = 0/199 (0%)
Strand=Plus/Plus
Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589
|||||||| | ||||| ||||| ||||||||||| ||| | ||||| ||||||
Sbjct 52487 ACCAAGTGAAGAGTAGATTCTTTCTGAATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCA 52546
Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649
||||| ||||| ||| |||||||||||||||| || ||||| || |||||||||||
Sbjct 52547 AGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAGGGATACCCTCCTTGTCCTGG 52606
Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709
|| || || || | || | |||||| | | |||||| |||| ||| | || ||
Sbjct 52607 ATCTTGGACTTGACGTTGTCAATGGTGTCGGAGGACTCGACTTCGAGGGTAATGGTCTTT 52666
Query 118710 CCGGTCAGAGTTTTTACAA 118728
||||| || || || ||||
Sbjct 52667 CCGGTAAGGGTCTTGACAA 52685
Score = 120 bits (132), Expect = 3e-22
Identities = 135/181 (75%), Gaps = 0/181 (0%)
Strand=Plus/Plus
Query 118536 TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGT 118595
|||| |||||||| || ||||||||||| ||| || ||||| |||||| |||||
Sbjct 52777 TGGAGAGTAGACTCCTTCTGAATGTTGTAGTCGGACAGGGTGCGGCCATCCTCAAGCTGC 52836
Query 118596 TTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTT 118655
||||||||| |||||||||||||||| || ||||| || ||||||||||| || ||
Sbjct 52837 TTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGGATACCCTCCTTGTCCTGGATCTTA 52896
Query 118656 TGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTC 118715
||||| | || | || |||| ||| ||||||| ||| | || ||||| |||
Sbjct 52897 GACTTAACGTTGTCAATAGTATCCGAAGACTCCACCTCGAGGGTGATGGTCTTGCCAGTC 52956
Query 118716 A 118716
|
Sbjct 52957 A 52957
Score = 111 bits (122), Expect = 1e-19
Identities = 150/209 (72%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589
|||||||| | ||||| ||||| ||||||||||| || | || || |||||||
Sbjct 52259 ACCAAGTGAAGAGTAGATTCTTTCTGAATGTTGTAGTCCGAAAGGGTACGGCCATCCTCG 52318
Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649
||||| |||||||| | ||||||||||||||||| || || || |||||||| ||
Sbjct 52319 AGCTGCTTTCCAGCAAAAATGAGACGCTGCTGATCCGGGGGGATACCCTCCTTATCCTGG 52378
Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709
|| || || || | || | ||| || | | |||||| |||| ||| | || |||
Sbjct 52379 ATCTTGGACTTGACATTGTCAATGGTATCAGAGGACTCGACTTCGAGGGTAATGGTCTTG 52438
Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
|| |||| || || || || || |||||
Sbjct 52439 CCCGTCAAGGTCTTGACGAAGATTTGCAT 52467
>seq145
Length=91869
Score = 123 bits (136), Expect = 2e-23
Identities = 140/188 (74%), Gaps = 0/188 (0%)
Strand=Plus/Plus
Query 118551 TTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATG 118610
|| ||||||||||| || || ||||| |||||| ||||| || |||||| ||||
Sbjct 6022 TTCTGAATGTTGTAGTCAGACAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATC 6081
Query 118611 AGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCG 118670
|| |||||||| || || || |||||||||||||| ||| || || || | |||
Sbjct 6082 AGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCG 6141
Query 118671 ACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 118730
| |||||||| | ||| ||||||| ||| | ||| || || || || || || || |||
Sbjct 6142 ATGGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTAAGGGTCTTGACGAAA 6201
Query 118731 ATCTGCAT 118738
||||||||
Sbjct 6202 ATCTGCAT 6209
>seq64
Length=146407
Score = 102 bits (112), Expect = 7e-17
Identities = 140/196 (71%), Gaps = 0/196 (0%)
Strand=Plus/Minus
Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594
||||| || ||||| || || |||||||| ||| || |||||| |||||| |||||
Sbjct 70941 GTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTCAAGCTG 70882
Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654
|| ||||| |||| | |||||||| || || || |||||||||||||| || ||
Sbjct 70881 CTTACCAGCAAAGATCAAGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTT 70822
Query 118655 TTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714
|| || | |||| ||||||| ||||||||| | ||| | || || || ||
Sbjct 70821 GGACTTGACGTTGTCGATCGTGTCCGAAGACTCGACCTCCAGGGTAATGGTCTTACCCGT 70762
Query 118715 CAGAGTTTTTACAAAA 118730
||| || || || |||
Sbjct 70761 CAGGGTCTTGACGAAA 70746
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433823986495396
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |