Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20platani_20[genbank_20GCA_5F000978885.1_202015-04-23] 1,213 sequences; 29,181,415 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq145 96.9 4e-15 seq338 93.3 5e-14 seq64 91.5 2e-13 >seq145 Length=91869 Score = 96.9 bits (106), Expect = 4e-15 Identities = 141/197 (72%), Gaps = 2/197 (1%) Strand=Plus/Plus Query 42994 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 43053 |||| ||||| ||||| |||| ||| || || | || || |||||||| |||||||| | Sbjct 6020 CCTTCTGAATGTTGTAGTCAGACAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGA 6079 Query 43054 TGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTC 43112 | || ||||||||||| | || | || |||||||||| ||| | || | |||| | Sbjct 6080 TCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCC-TGAATCTTGGACTTGACATTG 6138 Query 43113 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 43172 | | ||||| || || || |||| || || || || ||||| || ||||| || Sbjct 6139 TCGATGGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTAAGGGTCTTGACG 6198 Query 43173 AAGATTTGCATTTTTAC 43189 || || ||||| || || Sbjct 6199 AAAATCTGCATCTTGAC 6215 >seq338 Length=64627 Score = 93.3 bits (102), Expect = 5e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||||| ||||| || | || |||||| || || ||||| || | || || || | Sbjct 52024 ACGCAGAACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCC 52083 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 || || |||||||| || ||||| ||||| |||||||| || | || | | |||||| Sbjct 52084 ATCCTCAAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGATCCGGAGGGATACCCTCCTT 52143 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147 |||| ||| || ||||| | | | || || || || || |||| || || Sbjct 52144 GTCCTGGATCTTGGATTTGACATTGTCAATGGTATCAGAGGACTCGACTTCGAGGGTAAT 52203 Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||| |||||||| | ||||| || ||||||||||| Sbjct 52204 GGTCTTGCCCGTCAAGGTCTTGACGAAGATTTGCAT 52239 Score = 86.0 bits (94), Expect = 7e-12 Identities = 122/169 (72%), Gaps = 2/169 (1%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| ||||| ||||| || | ||| || || | || || |||||||| |||||||| Sbjct 52788 CTCCTTCTGAATGTTGTAGTCGGACAGGGTGCGGCCATCCTCAAGCTGCTTTCCAGCGAA 52847 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 ||||| ||||||||||| | || | | |||||||||| || | || | | | ||| Sbjct 52848 GATGAGACGCTGCTGGTCCGGAGGGATACCCTCCTTGTCC-TGGATCTTAGACTTAACGT 52906 Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGT 43159 | | | || || || ||||| |||| |||||||| ||||| || Sbjct 52907 TGTCAATAGTATCCGAAGACTCCACCTCGAGGGTGATGGTCTTGCCAGT 52955 Score = 82.4 bits (90), Expect = 9e-11 Identities = 129/182 (71%), Gaps = 2/182 (1%) Strand=Plus/Plus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 || || ||||| ||||| || | || || || | || || |||||||| || ||||| Sbjct 52505 TCTTTCTGAATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCAAGCTGCTTTCCGGCGAAG 52564 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112 ||||| ||||||||||| | || | | |||||||||| ||| || |||| ||| Sbjct 52565 ATGAGACGCTGCTGGTCCGGAGGGATACCCTCCTTGTCCTGGATCTTGGACTTGA-CGTT 52623 Query 43113 G-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | | |||||| || || || |||| || ||||| || || || || ||||| || Sbjct 52624 GTCAATGGTGTCGGAGGACTCGACTTCGAGGGTAATGGTCTTTCCGGTAAGGGTCTTGAC 52683 Query 43172 AA 43173 || Sbjct 52684 AA 52685 >seq64 Length=146407 Score = 91.5 bits (100), Expect = 2e-13 Identities = 132/184 (72%), Gaps = 2/184 (1%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || | |||||| || | || || |||||||||||||| || Sbjct 70929 CTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTCAAGCTGCTTACCAGCAAA 70870 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || | ||||||||||| | || | || |||||||||| ||| || |||| ||| Sbjct 70869 GATCAAGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGA-CGT 70811 Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | |||||| || || || || | || ||||| || ||||| || ||||| | Sbjct 70810 TGTCGATCGTGTCCGAAGACTCGACCTCCAGGGTAATGGTCTTACCCGTCAGGGTCTTGA 70751 Query 43171 CAAA 43174 | || Sbjct 70750 CGAA 70747 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571808929815640