Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20platani_20[genbank_20GCA_5F000978885.1_202015-04-23] 1,213 sequences; 29,181,415 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq411 266 3e-66 seq101 159 3e-34 seq145 100 3e-16 >seq411 Length=11963 Score = 266 bits (294), Expect = 3e-66 Identities = 637/958 (66%), Gaps = 8/958 (1%) Strand=Plus/Minus Query 23020 GGCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTC 23079 ||||| || || || ||||| || || ||||| || || |||||| | ||| || Sbjct 7485 GGCGAGAGATGCTAGGTTGCACACAGCGACCTCATCAGGGGCACAGTACTCGATAATCTC 7426 Query 23080 GGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCA 23139 || || || || || || || || | ||| |||| ||||| || || ||||| Sbjct 7425 AGTGCACAGGTTCGAACTGCGAATGGTACCTAGATTTTTCTGATTGCTCTTGCGGTTGCA 7366 Query 23140 CGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCG 23199 || ||||||||||| | || |||| ||||| ||| | ||| | || || Sbjct 7365 GTGGTCTTTGTAGAGCATAAAAGGGTTGCCAGTCTCAGTCTGAGCCTCCAGAATGGCATA 7306 Query 23200 CCACATAGTCTGAGCGTGAACA--CGT-CGCACGTACCTGCCTTCTTCCTCGTACTTTTG 23256 ||||| |||| || | ||| | | || || | ||| || | ||||||||||| Sbjct 7305 CCACAGTTTCTGGGCCTTGACAACCATGCGACCG---CGGCCCTCCTTCTCGTACTTTTC 7249 Query 23257 GTACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACA 23316 |||| || ||||| || | || || || || |||| |||||| ||| | || || Sbjct 7248 ATACAGAGCCTCAAACTCTTCGCCATAGCAATCCGCCAAGCCGGGGCATTCATTGGGGCA 7189 Query 23317 CATGAGACTCCACAT-TGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATA 23375 ||||||| |||| | | || || ||||| || |||| || | || ||||| | Sbjct 7188 CATGAGAGTCCAGTCCTCATTC-TTCTCAACACGCTTCATGAACAAGTCGCAGATCCACA 7130 Query 23376 GAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCA 23435 | || |||| || || || || || || || || || ||| |||||| || || | Sbjct 7129 GGGCCAAGAATAGGTCACGAGCACGGACTTCTTCCTTTCCGTGGTTCTTGCGTAAGTCGA 7070 Query 23436 AAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCT 23495 || || || || || |||||||| |||||||| |||| |||||| || || |||| || Sbjct 7069 GGAACTCGAAGACATCAGCATGCCATGGCTCGAGATAAATGGCAAAGGCTCCAGGTCGCT 7010 Query 23496 TATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGA 23555 | || || ||||| || || |||||||| ||||||||| | || | |||||| || |||| Sbjct 7009 TGTTTCCACCCTGGTCAACATAACGGGCGGTGTTGTTGAAAACACGTAGCATGGGAACGA 6950 Query 23556 GACCGTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAA 23615 ||||| || | ||| ||| || | || || | || |||| ||||| Sbjct 6949 TGCCGTTCGAAGTACCGTTAGTGCCAGCAATGTAAGAGCCAGTGGCACGAATACGGTGAA 6890 Query 23616 CGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGT 23675 | | || ||| || || || || || || ||||| || || || || || |||| Sbjct 6889 CATTGAGACCGATACCACCAGCCATCTTGGAAATCATGGCACAAGTCTTGAGGGTATCGT 6830 Query 23676 AGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTT 23735 | ||||||||||||||||| || || | |||| | |||||| ||||||| || || | Sbjct 6829 AAATGCCCTCGATGCTGTCATCCTTCATGTCGACTAGGAAACATGAAGACAACTGAGCCT 6770 Query 23736 TGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTA 23795 ||| ||| |||| || || || || ||||| || ||| | | ||||| | Sbjct 6769 GGGGAGTACCGGCATTAAAGAGCGTAGGTGATGCGTGAGTGAAGAACTTGCTAGACATAA 6710 Query 23796 GATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCA 23855 | ||||| || || | | ||| | | || || ||||| | || || |||| Sbjct 6709 GGTTGTAGGTTTCAAGCACACGATCGACTTTGTCACCCCAAATACCCACAGCAACACGCA 6650 Query 23856 TCATCATGTATTGAGGTCTCTCGACCGTGACGCCGTTAATTTTGAACAGATATGAACGTT 23915 | ||||||| || || | ||| || | || | || ||||| || || ||||| | Sbjct 6649 TTATCATGTGCTGGGGACGCTCAACAATCTTACCATCAAGTTTGAGTAGGTACGAACGCT 6590 Query 23916 GCATCGTTTTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTATGGCCGA 23973 | ||| ||||| ||||| || | ||||| |||||||| |||| ||| ||||| || Sbjct 6589 CGAGCGTCTTAAAGCCAAAGTACTGGTAGTTGAAGTCACGGTCGTACACAATGGCAGA 6532 Score = 111 bits (122), Expect = 1e-19 Identities = 167/232 (72%), Gaps = 9/232 (4%) Strand=Plus/Minus Query 22452 GGTTCACCACTTGAAACTCGCCGGACAAGA-CGCGGCGTTGGTAAATGTTGGATGTGAAC 22510 |||| || || || |||||||| | ||||| ||||||| |||||||||||||||||| || Sbjct 8053 GGTTGACGACCTGGAACTCGCCAG-CAAGAACGCGGCGCTGGTAAATGTTGGATGTGTAC 7995 Query 22511 GGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCC 22570 |||||||| | |||||||| |||| ||||| | || || || ||||| || || Sbjct 7994 GGTTCGAAGCACTCATTGTTGCCCAAAATCTGCGACGTGCTGGCTGTAGGCATGGGTGCA 7935 Query 22571 AACAGTAGCGAGTTTCTCAAGCCGTGCT--TTGAAATTTTACTCTTGAGCATCGACCAGT 22628 | || || || || | | || |||| || | || | || | ||| | | ||||| Sbjct 7934 ACTAGAAGAGAATTGCGTACACCATGCTGCTTAATCTTCTCCTTTAGAGAA--GTCCAGT 7877 Query 22629 CCCACAGATCGGACGGCGTCACATTGTCCCACATATCGTATTGCAACACGCC 22680 ||||||| || || |||||| ||||||||||| | ||||| | ||| Sbjct 7876 CCCACAGGTCACTAGGAGTCACA---TCCCACATATCAAACTGCAAGATGCC 7828 >seq101 Length=72697 Score = 159 bits (176), Expect = 3e-34 Identities = 550/842 (65%), Gaps = 33/842 (4%) Strand=Plus/Minus Query 57570 ATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTG 57629 || ||| | |||||||| ||||| || || || || ||||| | || || | || || Sbjct 41555 ATCTGGCAGATGTACAAGAAGGCCGAGGCCTCCTTCTGGACTGCTGAGGAGATTGATCTC 41496 Query 57630 TCTAAGGATCTGAGCGATTGGGATTCCC---TCAAAGAATCTGAGAGAAATTTTATTAAA 57686 ||||||||||| ||| ||| | || | || || ||| | || || Sbjct 41495 TCTAAGGATCTCCACGACTGGAACAACCGTCTGAACAAAGACGAGCAGTACTTCATCTCC 41436 Query 57687 CACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGA 57746 ||| | | || || || || || || ||||| || || ||||| ||| | || || | Sbjct 41435 CACATTCTTGCCTTCTTTGCTGCCTCTGATGGCATCGTCAACGAAAATCTCGTTGAGCGC 41376 Query 57747 TTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATT 57806 || ||| || ||||| | | ||||| | ||||| ||||| || || | || Sbjct 41375 TTCTCAGGCGAGGTGCAGATCCCCGAGGCCCGCTGCTTCTACGGTTTCCAGATCATGATG 41316 Query 57807 GAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGA--CAACG 57864 |||||| | || || |||| || ||||| || || || || ||| | ||||| | || Sbjct 41315 GAAAACATCCACTCTGAAACCTACTCGCTGCTGATTGACACCTACATCAAGGAGCCCTCG 41256 Query 57865 ACGAGAAACGTAGACTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAGAAGGCAG 57924 | | || || |||||||| || || || || || ||| ||| | ||||| | Sbjct 41255 -CAACGCACATAC-CTGTTCAATGCCATTGACACTATTCCCTGCATCCGCCGCAAGGCCG 41198 Query 57925 AGTGGTCAATCAAATGGATAAAAAGCGCCACGG---CCACGTTCGCCGAGAGGCTAATCG 57981 | ||| | | || ||||| | || || || | ||||| ||| || | ||| | | Sbjct 41197 ACTGGGCTCTGAAGTGGATCAC---CGACAAGGAGTCGACGTTTGCCCAGCGCCTAGTTG 41141 Query 57982 CGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGA 58041 | || || || ||||| || || || || || ||| ||| || | || || ||| || Sbjct 41140 CCTTTGCTGCTGTCGAGGGCATCTTTTTCTCAGGCGCCTTCGCCTCCATCTTCTGGCTGC 41081 Query 58042 AGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGG 58101 || || || || ||||| || ||||| || |||||| | || || || || |||| Sbjct 41080 GCAAGCGTGGTCTCATGCCTGGTCTGACCTTCTCAAACGAGCTTATTTCTCGTGATGAGG 41021 Query 58102 GTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAACCGACGCGGG 58161 | || || || || ||||| ||||| ||| ||| || | | || || ||| | | | Sbjct 41020 GCCTGCACACCGACTTTGCTTGCCTGCTGTTCTCGCA---TCTGAACAA-CCGCCCCAGC 40965 Query 58162 ATCGCATCTTGGACA-----TTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCAC 58216 | | | |||| || | ||||| || || |||| |||||| || ||||| | || Sbjct 40964 AAGG-ACCTTGTGCAAAAGATCATCACTGATGCCGTCGTGATCGAGAAGGAGTTCCTGAC 40906 Query 58217 CGAAGCCCTACCG-GTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATTG 58275 ||| || || || | || | |||| || |||||| ||| ||||| ||||||||| Sbjct 40905 CGAGGCTCTGCCCTGCGGTC-TGCTAGGAATGAACGCCGATCTGATGAAGCAGTACATTG 40847 Query 58276 AGTTTGTTGCCGACAG---ACTT-TTGCTCGAACTGATTGGAGAGCGTCATTACAACACG 58331 |||||||||| ||| | |||| |||||| | | |||| || ||| | Sbjct 40846 AGTTTGTTGCTGACCGCCTACTTGTTGCTCTA--GGCAACGAGAAGGT--GTACCGTGCC 40791 Query 58332 AAAAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTTTCGAA 58391 | ||| || || || || ||| | |||||||||| |||||||| ||||| || || Sbjct 40790 ACAAACCCATTCGACTTCATGGAGAACATCTCGCTCGGCGGCAAGACTAACTTCTTTGAG 40731 Query 58392 AA 58393 || Sbjct 40730 AA 40729 >seq145 Length=91869 Score = 100 bits (110), Expect = 3e-16 Identities = 117/158 (74%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| |||||||| ||||| || || || || ||||| ||| |||| ||||| | Sbjct 6212 AAGATGCAGATTTTCGTCAAGACCCTTACGGGTAAGACGATTACCCTCGAGGTTGAGTCC 6153 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || |||| |||| | ||||| | || ||||||||| ||| | || || ||| Sbjct 6152 TCGGACACCATCGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGCATTCCCCCGGAC 6093 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 |||||||| || || ||||||||||| ||| |||| || Sbjct 6092 CAGCAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGA 6055 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445759641066960