Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20platani_20[genbank_20GCA_5F000978885.1_202015-04-23]
1,213 sequences; 29,181,415 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq411 266 3e-66
seq101 159 3e-34
seq145 100 3e-16
>seq411
Length=11963
Score = 266 bits (294), Expect = 3e-66
Identities = 637/958 (66%), Gaps = 8/958 (1%)
Strand=Plus/Minus
Query 23020 GGCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTC 23079
||||| || || || ||||| || || ||||| || || |||||| | ||| ||
Sbjct 7485 GGCGAGAGATGCTAGGTTGCACACAGCGACCTCATCAGGGGCACAGTACTCGATAATCTC 7426
Query 23080 GGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCA 23139
|| || || || || || || || | ||| |||| ||||| || || |||||
Sbjct 7425 AGTGCACAGGTTCGAACTGCGAATGGTACCTAGATTTTTCTGATTGCTCTTGCGGTTGCA 7366
Query 23140 CGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCG 23199
|| ||||||||||| | || |||| ||||| ||| | ||| | || ||
Sbjct 7365 GTGGTCTTTGTAGAGCATAAAAGGGTTGCCAGTCTCAGTCTGAGCCTCCAGAATGGCATA 7306
Query 23200 CCACATAGTCTGAGCGTGAACA--CGT-CGCACGTACCTGCCTTCTTCCTCGTACTTTTG 23256
||||| |||| || | ||| | | || || | ||| || | |||||||||||
Sbjct 7305 CCACAGTTTCTGGGCCTTGACAACCATGCGACCG---CGGCCCTCCTTCTCGTACTTTTC 7249
Query 23257 GTACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACA 23316
|||| || ||||| || | || || || || |||| |||||| ||| | || ||
Sbjct 7248 ATACAGAGCCTCAAACTCTTCGCCATAGCAATCCGCCAAGCCGGGGCATTCATTGGGGCA 7189
Query 23317 CATGAGACTCCACAT-TGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATA 23375
||||||| |||| | | || || ||||| || |||| || | || ||||| |
Sbjct 7188 CATGAGAGTCCAGTCCTCATTC-TTCTCAACACGCTTCATGAACAAGTCGCAGATCCACA 7130
Query 23376 GAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCA 23435
| || |||| || || || || || || || || || ||| |||||| || || |
Sbjct 7129 GGGCCAAGAATAGGTCACGAGCACGGACTTCTTCCTTTCCGTGGTTCTTGCGTAAGTCGA 7070
Query 23436 AAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCT 23495
|| || || || || |||||||| |||||||| |||| |||||| || || |||| ||
Sbjct 7069 GGAACTCGAAGACATCAGCATGCCATGGCTCGAGATAAATGGCAAAGGCTCCAGGTCGCT 7010
Query 23496 TATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGA 23555
| || || ||||| || || |||||||| ||||||||| | || | |||||| || ||||
Sbjct 7009 TGTTTCCACCCTGGTCAACATAACGGGCGGTGTTGTTGAAAACACGTAGCATGGGAACGA 6950
Query 23556 GACCGTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAA 23615
||||| || | ||| ||| || | || || | || |||| |||||
Sbjct 6949 TGCCGTTCGAAGTACCGTTAGTGCCAGCAATGTAAGAGCCAGTGGCACGAATACGGTGAA 6890
Query 23616 CGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGT 23675
| | || ||| || || || || || || ||||| || || || || || ||||
Sbjct 6889 CATTGAGACCGATACCACCAGCCATCTTGGAAATCATGGCACAAGTCTTGAGGGTATCGT 6830
Query 23676 AGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTT 23735
| ||||||||||||||||| || || | |||| | |||||| ||||||| || || |
Sbjct 6829 AAATGCCCTCGATGCTGTCATCCTTCATGTCGACTAGGAAACATGAAGACAACTGAGCCT 6770
Query 23736 TGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTA 23795
||| ||| |||| || || || || ||||| || ||| | | ||||| |
Sbjct 6769 GGGGAGTACCGGCATTAAAGAGCGTAGGTGATGCGTGAGTGAAGAACTTGCTAGACATAA 6710
Query 23796 GATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCA 23855
| ||||| || || | | ||| | | || || ||||| | || || ||||
Sbjct 6709 GGTTGTAGGTTTCAAGCACACGATCGACTTTGTCACCCCAAATACCCACAGCAACACGCA 6650
Query 23856 TCATCATGTATTGAGGTCTCTCGACCGTGACGCCGTTAATTTTGAACAGATATGAACGTT 23915
| ||||||| || || | ||| || | || | || ||||| || || ||||| |
Sbjct 6649 TTATCATGTGCTGGGGACGCTCAACAATCTTACCATCAAGTTTGAGTAGGTACGAACGCT 6590
Query 23916 GCATCGTTTTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTATGGCCGA 23973
| ||| ||||| ||||| || | ||||| |||||||| |||| ||| ||||| ||
Sbjct 6589 CGAGCGTCTTAAAGCCAAAGTACTGGTAGTTGAAGTCACGGTCGTACACAATGGCAGA 6532
Score = 111 bits (122), Expect = 1e-19
Identities = 167/232 (72%), Gaps = 9/232 (4%)
Strand=Plus/Minus
Query 22452 GGTTCACCACTTGAAACTCGCCGGACAAGA-CGCGGCGTTGGTAAATGTTGGATGTGAAC 22510
|||| || || || |||||||| | ||||| ||||||| |||||||||||||||||| ||
Sbjct 8053 GGTTGACGACCTGGAACTCGCCAG-CAAGAACGCGGCGCTGGTAAATGTTGGATGTGTAC 7995
Query 22511 GGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCC 22570
|||||||| | |||||||| |||| ||||| | || || || ||||| || ||
Sbjct 7994 GGTTCGAAGCACTCATTGTTGCCCAAAATCTGCGACGTGCTGGCTGTAGGCATGGGTGCA 7935
Query 22571 AACAGTAGCGAGTTTCTCAAGCCGTGCT--TTGAAATTTTACTCTTGAGCATCGACCAGT 22628
| || || || || | | || |||| || | || | || | ||| | | |||||
Sbjct 7934 ACTAGAAGAGAATTGCGTACACCATGCTGCTTAATCTTCTCCTTTAGAGAA--GTCCAGT 7877
Query 22629 CCCACAGATCGGACGGCGTCACATTGTCCCACATATCGTATTGCAACACGCC 22680
||||||| || || |||||| ||||||||||| | ||||| | |||
Sbjct 7876 CCCACAGGTCACTAGGAGTCACA---TCCCACATATCAAACTGCAAGATGCC 7828
>seq101
Length=72697
Score = 159 bits (176), Expect = 3e-34
Identities = 550/842 (65%), Gaps = 33/842 (4%)
Strand=Plus/Minus
Query 57570 ATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTG 57629
|| ||| | |||||||| ||||| || || || || ||||| | || || | || ||
Sbjct 41555 ATCTGGCAGATGTACAAGAAGGCCGAGGCCTCCTTCTGGACTGCTGAGGAGATTGATCTC 41496
Query 57630 TCTAAGGATCTGAGCGATTGGGATTCCC---TCAAAGAATCTGAGAGAAATTTTATTAAA 57686
||||||||||| ||| ||| | || | || || ||| | || ||
Sbjct 41495 TCTAAGGATCTCCACGACTGGAACAACCGTCTGAACAAAGACGAGCAGTACTTCATCTCC 41436
Query 57687 CACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGA 57746
||| | | || || || || || || ||||| || || ||||| ||| | || || |
Sbjct 41435 CACATTCTTGCCTTCTTTGCTGCCTCTGATGGCATCGTCAACGAAAATCTCGTTGAGCGC 41376
Query 57747 TTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATT 57806
|| ||| || ||||| | | ||||| | ||||| ||||| || || | ||
Sbjct 41375 TTCTCAGGCGAGGTGCAGATCCCCGAGGCCCGCTGCTTCTACGGTTTCCAGATCATGATG 41316
Query 57807 GAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGA--CAACG 57864
|||||| | || || |||| || ||||| || || || || ||| | ||||| | ||
Sbjct 41315 GAAAACATCCACTCTGAAACCTACTCGCTGCTGATTGACACCTACATCAAGGAGCCCTCG 41256
Query 57865 ACGAGAAACGTAGACTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAGAAGGCAG 57924
| | || || |||||||| || || || || || ||| ||| | ||||| |
Sbjct 41255 -CAACGCACATAC-CTGTTCAATGCCATTGACACTATTCCCTGCATCCGCCGCAAGGCCG 41198
Query 57925 AGTGGTCAATCAAATGGATAAAAAGCGCCACGG---CCACGTTCGCCGAGAGGCTAATCG 57981
| ||| | | || ||||| | || || || | ||||| ||| || | ||| | |
Sbjct 41197 ACTGGGCTCTGAAGTGGATCAC---CGACAAGGAGTCGACGTTTGCCCAGCGCCTAGTTG 41141
Query 57982 CGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGA 58041
| || || || ||||| || || || || || ||| ||| || | || || ||| ||
Sbjct 41140 CCTTTGCTGCTGTCGAGGGCATCTTTTTCTCAGGCGCCTTCGCCTCCATCTTCTGGCTGC 41081
Query 58042 AGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGG 58101
|| || || || ||||| || ||||| || |||||| | || || || || ||||
Sbjct 41080 GCAAGCGTGGTCTCATGCCTGGTCTGACCTTCTCAAACGAGCTTATTTCTCGTGATGAGG 41021
Query 58102 GTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAACCGACGCGGG 58161
| || || || || ||||| ||||| ||| ||| || | | || || ||| | | |
Sbjct 41020 GCCTGCACACCGACTTTGCTTGCCTGCTGTTCTCGCA---TCTGAACAA-CCGCCCCAGC 40965
Query 58162 ATCGCATCTTGGACA-----TTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCAC 58216
| | | |||| || | ||||| || || |||| |||||| || ||||| | ||
Sbjct 40964 AAGG-ACCTTGTGCAAAAGATCATCACTGATGCCGTCGTGATCGAGAAGGAGTTCCTGAC 40906
Query 58217 CGAAGCCCTACCG-GTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATTG 58275
||| || || || | || | |||| || |||||| ||| ||||| |||||||||
Sbjct 40905 CGAGGCTCTGCCCTGCGGTC-TGCTAGGAATGAACGCCGATCTGATGAAGCAGTACATTG 40847
Query 58276 AGTTTGTTGCCGACAG---ACTT-TTGCTCGAACTGATTGGAGAGCGTCATTACAACACG 58331
|||||||||| ||| | |||| |||||| | | |||| || ||| |
Sbjct 40846 AGTTTGTTGCTGACCGCCTACTTGTTGCTCTA--GGCAACGAGAAGGT--GTACCGTGCC 40791
Query 58332 AAAAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTTTCGAA 58391
| ||| || || || || ||| | |||||||||| |||||||| ||||| || ||
Sbjct 40790 ACAAACCCATTCGACTTCATGGAGAACATCTCGCTCGGCGGCAAGACTAACTTCTTTGAG 40731
Query 58392 AA 58393
||
Sbjct 40730 AA 40729
>seq145
Length=91869
Score = 100 bits (110), Expect = 3e-16
Identities = 117/158 (74%), Gaps = 0/158 (0%)
Strand=Plus/Minus
Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249
|| ||||| |||||||| ||||| || || || || ||||| ||| |||| ||||| |
Sbjct 6212 AAGATGCAGATTTTCGTCAAGACCCTTACGGGTAAGACGATTACCCTCGAGGTTGAGTCC 6153
Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309
|| |||| |||| | ||||| | || ||||||||| ||| | || || |||
Sbjct 6152 TCGGACACCATCGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGCATTCCCCCGGAC 6093
Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347
|||||||| || || ||||||||||| ||| |||| ||
Sbjct 6092 CAGCAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGA 6055
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445759641066960
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