Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20platani_20[genbank_20GCA_5F000978885.1_202015-04-23]
1,213 sequences; 29,181,415 total letters
Query= NC_003310.1
Length=196858
Score E
Sequences producing significant alignments: (Bits) Value
seq101 156 5e-33
seq411 149 8e-31
>seq101
Length=72697
Score = 156 bits (172), Expect = 5e-33
Identities = 381/572 (67%), Gaps = 18/572 (3%)
Strand=Plus/Plus
Query 33573 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAA 33632
|||| || || || || ||| |||||| ||||| || | | ||| | ||||| ||
Sbjct 40990 AACAGCAGGCAAGCAAAGTCGGTGTGCAGGCCCTCATCACGAGAAATAAGCTCGTTTGAG 41049
Query 33633 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCG 33692
|| || || || ||||| || |||||||| ||||| || ||||| ||||| | ||
Sbjct 41050 AAGGTCAGACCAGGCATGAGACCACGCTTGCGCAGCCAGAAGATGGAGGCGAAGGCGCCT 41109
Query 33693 GAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAAC--CGGCGC 33750
|| || ||||| || || || ||||||||||||| || | || || ||| || | |
Sbjct 41110 GAGAAAAAGATGCCCTCGACAGCAGCAAAGGCAACTAGGCGCTGGGCA-AACGTCGACTC 41168
Query 33751 --TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTC 33808
|||| |||||||| ||||||| |||||||| | || || || || ||
Sbjct 41169 CTTGTCGGTGATCCACTTCAGAGCCCAGTCGGCCTTGCGGCGGATGCAGGGAATAGTGTC 41228
Query 33809 TATGGCATTAAAGAGATAGtttttttCATTACTA----TCTTTAACATAAGTATCGATCA 33864
|||||||| || || || | | | || | | || || | || || || ||||
Sbjct 41229 AATGGCATTGAACAGGTA----TGTGCGTTGCGAGGGCTCCTTGATGTAGGTGTCAATCA 41284
Query 33865 AAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATC 33924
|| || |||| || || |||||||| || ||||| || |||||||| || |
Sbjct 41285 GCAGCGAGTAGGTTTCAGAGTGGATGTTTTCCATCATGATCTGGAAACCGTAGAAGCAGC 41344
Query 33925 TAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTC 33984
||||||| |||||||| || | || || || | | |||||| || || || |
Sbjct 41345 GGGCCTCGGGGATCTGCACCTCGCCTGAGAAGCGCTCAACGAGATTTTCGTTGACGATGC 41404
Query 33985 CATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT- 34043
||||| ||| ||||| || || | | || || || || | |||||| ||||
Sbjct 41405 CATCAGAGGCAGCAAAGAAGGCAAGAATGTGGGAGATGAAGTACTGCTCGTCT-TTGTTC 41463
Query 34044 ---AGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAAT 34100
| || ||||| || | || ||| ||||| | ||| | || || | ||||| ||
Sbjct 41464 AGACGGTTGTTCCAGTCGTGGAGATCCTTAGAGAGATCAATCTCCTCAGCAGTCCAGAAG 41523
Query 34101 GATGCCTCTGCCTTTTTATACATATTCCAGAT 34132
|| ||||| ||||| || ||||| | ||||||
Sbjct 41524 GAGGCCTCGGCCTTCTTGTACATCTGCCAGAT 41555
>seq411
Length=11963
Score = 149 bits (164), Expect = 8e-31
Identities = 508/778 (65%), Gaps = 23/778 (3%)
Strand=Plus/Minus
Query 63349 TAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTC 63408
|||| ||||||||| | | | ||||| |||||| || || | || ||||| | |||
Sbjct 7077 TAAG-TCGAGGAACTCGAAGACATCAGCATGCCATGGCTCGAGATAAATGGCAAAGGCTC 7019
Query 63409 CAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACA 63468
|||| || |||||||| ||||| || | || | |||||||| || |||| | | ||
Sbjct 7018 CAGGTCGCTTGTTTCCACCCTGGTCAACATAACGGGCGGTGTTGTTGAAAACACGTAGCA 6959
Query 63469 TTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAA 63528
| |||| || ||||| || |||| || || || | || || ||| |||||||||
Sbjct 6958 TGGGAACGATGCCGTTCGAAGTACCGTTAGTGCCAGCAATGTAAGAGCCAGTGGCACGAA 6899
Query 63529 TA--TTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTT 63586
|| | |||| ||||| || || || ||||| || || || | || || ||
Sbjct 6898 TACGGTGAACATTG--AGACCGATACCACCAGCCATCTTGGAAATCATGGCACAAGTCTT 6841
Query 63587 TAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGA 63646
| || || || ||||| || ||||| ||||| |||||| | ||| ||||| |||
Sbjct 6840 GAGGGTATCGTAAATGCCCTCGATGCTGTCATCCTTCATGTCGACTAGGAAACATGAAGA 6781
Query 63647 CATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTT 63706
|| || | | ||| || |||||||| | ||||| || ||||| || || | ||
Sbjct 6780 CAACTGAGCCTGGGGAGTACCGGCATTAAAGAGCGTAGGTGATGCGTGAGTGAAGAACTT 6721
Query 63707 TTCAGAAAGTAGATTGTACGTCTCAA-TAGCTGA--GTCTAT---ATCCCATTGATGAAT 63760
||| | || ||||| || |||| | || | || | | |||| |||
Sbjct 6720 GCTAGACATAAGGTTGTAGGTTTCAAGCACACGATCGACTTTGTCACCCCA------AAT 6667
Query 63761 TCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTT 63820
|| || || |||||||||| ||||||||| || | |||||||| || | | |||
Sbjct 6666 ACCCACAGCAACACGCATTATCATGTGCTGGGGACGCTCAACAATCTTACCATCAAGTTT 6607
Query 63821 CAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTC 63880
| | ||| || || | || ||||| ||||| || | ||| ||||| || ||
Sbjct 6606 GAGTAGGTACGAACGCTCGAGCGTCTTAAAGCCAAAGTACTGGTAGTTGAAGTCACGGTC 6547
Query 63881 GTAAATAATAACCGAATTGAGCTTATCCTTATATTTGTTAACTATATCCAT-GGTAATAC 63939
||| | ||| | || | |||| |||||| | ||| | | ||| ||
Sbjct 6546 GTACACAATGGCAGAGTCCAGCTCATCCTTGTGACGCATAA-TGCACTCATATGTCTCTT 6488
Query 63940 TTGAAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCA 63999
| || || || || || ||| | || || |||||||||| | | | || ||
Sbjct 6487 TGGAGATCATAGGGGAGGCTTTACGGTTCGCGGGGTTAACATAGTGGTAAAGGTCAGACA 6428
Query 64000 TCACTTCACTA-AATAGtttttttGTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCG 64058
||| || | || | || || |||| |||||| ||||| || | || || | ||||
Sbjct 6427 CCAC-CGACGACCATTGCTTCTTGGTTTGCTTGTGAAGATTAGAGACAGCAATACGGGCG 6369
Query 64059 GCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAGT-GGCTGCTATTTCGGCTGCC 64115
|| || ||||||||||| ||||| |||| | || || ||| || ||||||| |||
Sbjct 6368 GCCAGGATGGCATAATCGGGATG-TGTGACGGTCATGTAGGCGGCAGTTTCGGCGGCC 6312
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 629808050390640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |