Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20platani_20[genbank_20GCA_5F000978885.1_202015-04-23]
1,213 sequences; 29,181,415 total letters
Query= NC_003494.1
Length=111362
Score E
Sequences producing significant alignments: (Bits) Value
seq101 107 1e-18
>seq101
Length=72697
Score = 107 bits (118), Expect = 1e-18
Identities = 277/417 (66%), Gaps = 14/417 (3%)
Strand=Plus/Minus
Query 22750 GCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCATATTCTGGCTG 22809
|||||||| ||||| || ||| || | || || || | || || |||| |||||||||
Sbjct 41141 GCCTTTGCTGCTGTCGAGGGCATCTTTTTCTCAGGCGCCTTCGCCTCCATCTTCTGGCTG 41082
Query 22810 AAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGCCGTGACGAA 22869
|| ||| |||||||| || || | || || |||||| | ||| ||||| ||
Sbjct 41081 CGCAAGCGTGGTCTCATGCCTGGTCTGACCTTCTCAAACGAGCTTATTTCTCGTGATGAG 41022
Query 22870 GGTCTACACTGTGACTTTGCTTGTATGCTGTTTAGGCAAATGGCAAACAAACCGTGTCAG 22929
|| || ||| ||||||||||| ||||||| ||| || ||| || | ||
Sbjct 41021 GGCCTGCACACCGACTTTGCTTGCCTGCTGTTCTCGCATCTGAACAACCGCCCCAGCAAG 40962
Query 22930 GACGATGCACATCAAATCATATCTGATGCCGTTGACATTGAGACGGCTTTCTTCCAAGAG 22989
||| || || | ||||| |||||||||| | || |||| || ||| | |||
Sbjct 40961 GACCTTGTGCAAAAGATCATCACTGATGCCGTCGTGATCGAGAAGGAGTTCCTGACCGAG 40902
Query 22990 GCACTAAAGACACCC---CTACTTGGTATGAATAGTGACAGTATGAGACTGTACATACAG 23046
|| || | | | || || || ||||| || |||| | |||||| ||
Sbjct 40901 GCTCT---GCCCTGCGGTCTGCTAGGAATGAACGCCGATCTGATGAAGCAGTACATTGAG 40845
Query 23047 TTTGTTGCAGATCGCCTGCTCGATGCCCTGGGTTATGCAAAGATGTATAACGTTGCC--- 23103
|||||||| || ||||| || | ||| || || | | ||| ||| || ||||
Sbjct 40844 TTTGTTGCTGACCGCCTACTTGTTGCTCTAGGCAACGAGAAGGTGT---ACCGTGCCACA 40788
Query 23104 AATCCATTTGATTTCATGGATAACAT-TAGCATTGAAGGTAAAACAAACTTCTTTGA 23159
|| ||||| || |||||||| ||||| | || | | || || || |||||||||||
Sbjct 40787 AACCCATTCGACTTCATGGAGAACATCTCGC-TCGGCGGCAAGACTAACTTCTTTGA 40732
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 356228333642839
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |