Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20platani_20[genbank_20GCA_5F000978885.1_202015-04-23]
1,213 sequences; 29,181,415 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq411 154 2e-32
>seq411
Length=11963
Score = 154 bits (170), Expect = 2e-32
Identities = 741/1157 (64%), Gaps = 32/1157 (3%)
Strand=Plus/Minus
Query 71697 GGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCA---TATTGTATAAT 71753
||| | |||||| || || || || || ||||||| || |||| || | |||||
Sbjct 7485 GGCGAGAGATGCTAGGTTGCACACAGCGACCTCATCAGG---GGCACAGTACTCGATAAT 7429
Query 71754 TTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTT 71813
|||||||| || || || ||||| |||| ||||| ||||| ||||| |||
Sbjct 7428 CTCAGTGCACAGGTTCGAACTGCGAATGGTACCTAGATTTTTCTGATTGCTCTTGCGGTT 7369
Query 71814 ACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGC 71873
|| || || || || ||||| || | ||||| ||| |||||| || | ||| ||
Sbjct 7368 GCAGTGGTCTTTGTAGAGCATAAAAGGGTTGCCAGTCTCAGTCTGAGCCTCCAGAATGGC 7309
Query 71874 TTTCCAGACGACTC-GAGCCTTTATTATATTCTTGT-ATCTCTTTTCTCTTTC--GTATT 71929
| ||| | | || | ||||| | | | || | | | ||| ||| ||| |
Sbjct 7308 ATACCACA-GTTTCTGGGCCTTGACAAC---CATGCGACCGCGGCCCTCCTTCTCGTACT 7253
Query 71930 GTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCG 71989
| ||| | || ||||| || || | || | || || || |||||||| |
Sbjct 7252 TTTCATACAGAGCCTCAAACTCTTCGCCATAGCAATCCGCCAAGCCGGGGCATTCATTGG 7193
Query 71990 GACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCC 72049
| ||||| | | ||| || ||| | | || || ||||| || | || ||||
Sbjct 7192 GGCACATGAGAGTCCAGTCCTCATTCTTCTCAACACGCTTCATGAACAAGTCGCAGATCC 7133
Query 72050 AAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTT-TAAGA 72108
| || || | ||||| || | | | || || ||||| ||||| ||||
Sbjct 7132 ACAGGGCCAAGAATAGGTCACGAGCACGGACTTCTTCCTTTCCGTGGTTCTTGCGTAAG- 7074
Query 72109 TCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGC 72168
||||||||| | | | ||||| |||||| || || | || ||||| | |||| ||
Sbjct 7073 TCGAGGAACTCGAAGACATCAGCATGCCATGGCTCGAGATAAATGGCAAAGGCTCCAGGT 7014
Query 72169 CGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGA 72228
|| |||||||| ||||| || | || | |||||||| || |||| | | ||| |||
Sbjct 7013 CGCTTGTTTCCACCCTGGTCAACATAACGGGCGGTGTTGTTGAAAACACGTAGCATGGGA 6954
Query 72229 ATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATA--T 72286
| || || || || | ||| || || || | || || ||| |||||||||||
Sbjct 6953 ACGATGCCGTTCGAAGTACCGTTAGTGCCAGCAATGTAAGAGCCAGTGGCACGAATACGG 6894
Query 72287 TGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACG 72346
|| |||| ||||| || || || ||||| || || || | || || || | |
Sbjct 6893 TGAACATTG--AGACCGATACCACCAGCCATCTTGGAAATCATGGCACAAGTCTTGAGGG 6836
Query 72347 TATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTT 72406
|||| || |||||||| || || |||||| |||||| | ||| ||||| ||||| |
Sbjct 6835 TATCGTAAATGCCCTCGATGCTGTCATCCTTCATGTCGACTAGGAAACATGAAGACAACT 6776
Query 72407 GGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAG 72466
| | ||| || |||||||| | ||||| || ||||| || || | || ||
Sbjct 6775 GAGCCTGGGGAGTACCGGCATTAAAGAGCGTAGGTGATGCGTGAGTGAAGAACTTGCTAG 6716
Query 72467 ACAGTAGATTGTACGTCTCAA-TAGCTGAT--TCTATATCCCATTGATGTATTCCTACCG 72523
||| || ||||| || |||| | ||| || | || | | || || || |
Sbjct 6715 ACATAAGGTTGTAGGTTTCAAGCACACGATCGACTTTGTCACCCCAA---ATACCCACAG 6659
Query 72524 CGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGT 72583
| |||||||||| ||| ||||| || | ||||| ||||| || | ||| | | ||
Sbjct 6658 CAACACGCATTATCATGTGCTGGGGACGCTCAACAATCTTACCATCAAGTTTGAGTAGGT 6599
Query 72584 AGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAA 72643
| || || | || ||||| ||||| || | ||| ||||| || ||||| | ||
Sbjct 6598 ACGAACGCTCGAGCGTCTTAAAGCCAAAGTACTGGTAGTTGAAGTCACGGTCGTACACAA 6539
Query 72644 TAACCGAATTGAGTTTATCCTTATATTTGTTAACTATATCCATGGTGATACTT--GAAAT 72701
| | || | || | |||||| | ||| | | ||| || ||| || ||
Sbjct 6538 TGGCAGAGTCCAGCTCATCCTTGTGACGCATAA-TGCACTCAT-ATGTCTCTTTGGAGAT 6481
Query 72702 AATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTC 72761
|| || || ||| | || || |||||||||| | | | || || |||
Sbjct 6480 CATAGGGGAGGCTTTACGGTTCGCGGGGTTAACATAGTGGTAAAGGTCAGACACCAC-CG 6422
Query 72762 ACTA-AATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAA 72820
|| | || | || || |||| |||||| ||||| || || || || | |||||| || |
Sbjct 6421 ACGACCATTGCTTCTTGGTTTGCTTGTGAAGATTAGAGACAGCAATACGGGCGGCCAGGA 6362
Query 72821 TGGCATAATCTGGATGT 72837
|||||||||| ||||||
Sbjct 6361 TGGCATAATCGGGATGT 6345
Score = 89.7 bits (98), Expect = 7e-13
Identities = 344/537 (64%), Gaps = 5/537 (1%)
Strand=Plus/Minus
Query 70789 TCCTTGTCCAATGTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTACATG 70848
|||| ||| | || || || || || | | || || | |||||||| |||||||||
Sbjct 8402 TCCTGGTCTACAGTGAATTGGATAGGTGCAGCAGCAGCCTGCGTACGTAAGTAGTACATG 8343
Query 70849 CCTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTA 70908
|| || || ||||| || |||| || ||| ||||| || || | ||| | |
Sbjct 8342 CCCGTCTTGAGACCTAGTTTCCAGCCAGCAAAGTGCATGCTGGTGATCTTGCCCATGGTG 8283
Query 70909 GGATCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCA 70968
||||| |||||||| || | ||||| ||| || ||||| || || | || |||
Sbjct 8282 GGATCTTTCATGTGAATGTTTAGAGACTGCGATTGGTCAATGAAAGCACCACGATCAGCA 8223
Query 70969 GCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATA 71028
||||||| | | || || | ||| ||||||| || || || | ||||||
Sbjct 8222 GCCATTTGCACAACTGTACGCTGGGAAATCTCCCAAACGGTCTTGTACAGAGCTTTAATA 8163
Query 71029 TCTTCTGGAAGGTTTG---TATTCTGAATGGATCCACCATCTGCAATAATCCTATTTTTG 71085
|| | |||| | | | | ||||| ||||| ||| || |||||||| | ||| ||
Sbjct 8162 TCAGCAGGAATGCTAGAGATGTTCTGGATGGAGCCATTGTCCGCAATAATGCGATTCTTC 8103
Query 71086 ATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACTACT 71145
|| | ||| |||||| ||| || | | || || || || || ||
Sbjct 8102 ATGTTGTCAGACCATAAACCAAGATCGACTAGGTCACGTAGAAGCCAGGGGTTGACGACC 8043
Query 71146 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACTGAC 71205
|| || || |||| | || | || |||||| || || |||||||| | ||
Sbjct 8042 TGGAACTCGCCAGCAAGAACGCGGCGCTGGTAAATGTTGGATGTGTACGGTTCGAAGCAC 7983
Query 71206 TCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGACTA 71265
||||| || |||||||| || | || || || ||||| ||||| || | ||| |
Sbjct 7982 TCATTGTTGCCCAAAATCTGCGACGTGCTGGCTGTAGGCATGGGTGCAACTAGAAGAGAA 7923
Query 71266 TTTCTAAGACCATG-TGATCGGATTTTATCTTTTAGAGATTCCCAATTCCAAAGATC 71321
|| | | |||||| || | || || || |||||||| ||| | ||| || ||
Sbjct 7922 TTGCGTACACCATGCTGCT-TAATCTTCTCCTTTAGAGAAGTCCAGTCCCACAGGTC 7867
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 671129023851880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |