Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20platani_20[genbank_20GCA_5F000978885.1_202015-04-23] 1,213 sequences; 29,181,415 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq411 154 2e-32 >seq411 Length=11963 Score = 154 bits (170), Expect = 2e-32 Identities = 741/1157 (64%), Gaps = 32/1157 (3%) Strand=Plus/Minus Query 71697 GGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCA---TATTGTATAAT 71753 ||| | |||||| || || || || || ||||||| || |||| || | ||||| Sbjct 7485 GGCGAGAGATGCTAGGTTGCACACAGCGACCTCATCAGG---GGCACAGTACTCGATAAT 7429 Query 71754 TTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTT 71813 |||||||| || || || ||||| |||| ||||| ||||| ||||| ||| Sbjct 7428 CTCAGTGCACAGGTTCGAACTGCGAATGGTACCTAGATTTTTCTGATTGCTCTTGCGGTT 7369 Query 71814 ACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGC 71873 || || || || || ||||| || | ||||| ||| |||||| || | ||| || Sbjct 7368 GCAGTGGTCTTTGTAGAGCATAAAAGGGTTGCCAGTCTCAGTCTGAGCCTCCAGAATGGC 7309 Query 71874 TTTCCAGACGACTC-GAGCCTTTATTATATTCTTGT-ATCTCTTTTCTCTTTC--GTATT 71929 | ||| | | || | ||||| | | | || | | | ||| ||| ||| | Sbjct 7308 ATACCACA-GTTTCTGGGCCTTGACAAC---CATGCGACCGCGGCCCTCCTTCTCGTACT 7253 Query 71930 GTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCG 71989 | ||| | || ||||| || || | || | || || || |||||||| | Sbjct 7252 TTTCATACAGAGCCTCAAACTCTTCGCCATAGCAATCCGCCAAGCCGGGGCATTCATTGG 7193 Query 71990 GACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCC 72049 | ||||| | | ||| || ||| | | || || ||||| || | || |||| Sbjct 7192 GGCACATGAGAGTCCAGTCCTCATTCTTCTCAACACGCTTCATGAACAAGTCGCAGATCC 7133 Query 72050 AAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTT-TAAGA 72108 | || || | ||||| || | | | || || ||||| ||||| |||| Sbjct 7132 ACAGGGCCAAGAATAGGTCACGAGCACGGACTTCTTCCTTTCCGTGGTTCTTGCGTAAG- 7074 Query 72109 TCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGC 72168 ||||||||| | | | ||||| |||||| || || | || ||||| | |||| || Sbjct 7073 TCGAGGAACTCGAAGACATCAGCATGCCATGGCTCGAGATAAATGGCAAAGGCTCCAGGT 7014 Query 72169 CGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGA 72228 || |||||||| ||||| || | || | |||||||| || |||| | | ||| ||| Sbjct 7013 CGCTTGTTTCCACCCTGGTCAACATAACGGGCGGTGTTGTTGAAAACACGTAGCATGGGA 6954 Query 72229 ATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATA--T 72286 | || || || || | ||| || || || | || || ||| ||||||||||| Sbjct 6953 ACGATGCCGTTCGAAGTACCGTTAGTGCCAGCAATGTAAGAGCCAGTGGCACGAATACGG 6894 Query 72287 TGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACG 72346 || |||| ||||| || || || ||||| || || || | || || || | | Sbjct 6893 TGAACATTG--AGACCGATACCACCAGCCATCTTGGAAATCATGGCACAAGTCTTGAGGG 6836 Query 72347 TATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTT 72406 |||| || |||||||| || || |||||| |||||| | ||| ||||| ||||| | Sbjct 6835 TATCGTAAATGCCCTCGATGCTGTCATCCTTCATGTCGACTAGGAAACATGAAGACAACT 6776 Query 72407 GGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAG 72466 | | ||| || |||||||| | ||||| || ||||| || || | || || Sbjct 6775 GAGCCTGGGGAGTACCGGCATTAAAGAGCGTAGGTGATGCGTGAGTGAAGAACTTGCTAG 6716 Query 72467 ACAGTAGATTGTACGTCTCAA-TAGCTGAT--TCTATATCCCATTGATGTATTCCTACCG 72523 ||| || ||||| || |||| | ||| || | || | | || || || | Sbjct 6715 ACATAAGGTTGTAGGTTTCAAGCACACGATCGACTTTGTCACCCCAA---ATACCCACAG 6659 Query 72524 CGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGT 72583 | |||||||||| ||| ||||| || | ||||| ||||| || | ||| | | || Sbjct 6658 CAACACGCATTATCATGTGCTGGGGACGCTCAACAATCTTACCATCAAGTTTGAGTAGGT 6599 Query 72584 AGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAA 72643 | || || | || ||||| ||||| || | ||| ||||| || ||||| | || Sbjct 6598 ACGAACGCTCGAGCGTCTTAAAGCCAAAGTACTGGTAGTTGAAGTCACGGTCGTACACAA 6539 Query 72644 TAACCGAATTGAGTTTATCCTTATATTTGTTAACTATATCCATGGTGATACTT--GAAAT 72701 | | || | || | |||||| | ||| | | ||| || ||| || || Sbjct 6538 TGGCAGAGTCCAGCTCATCCTTGTGACGCATAA-TGCACTCAT-ATGTCTCTTTGGAGAT 6481 Query 72702 AATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTC 72761 || || || ||| | || || |||||||||| | | | || || ||| Sbjct 6480 CATAGGGGAGGCTTTACGGTTCGCGGGGTTAACATAGTGGTAAAGGTCAGACACCAC-CG 6422 Query 72762 ACTA-AATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAA 72820 || | || | || || |||| |||||| ||||| || || || || | |||||| || | Sbjct 6421 ACGACCATTGCTTCTTGGTTTGCTTGTGAAGATTAGAGACAGCAATACGGGCGGCCAGGA 6362 Query 72821 TGGCATAATCTGGATGT 72837 |||||||||| |||||| Sbjct 6361 TGGCATAATCGGGATGT 6345 Score = 89.7 bits (98), Expect = 7e-13 Identities = 344/537 (64%), Gaps = 5/537 (1%) Strand=Plus/Minus Query 70789 TCCTTGTCCAATGTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTACATG 70848 |||| ||| | || || || || || | | || || | |||||||| ||||||||| Sbjct 8402 TCCTGGTCTACAGTGAATTGGATAGGTGCAGCAGCAGCCTGCGTACGTAAGTAGTACATG 8343 Query 70849 CCTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTA 70908 || || || ||||| || |||| || ||| ||||| || || | ||| | | Sbjct 8342 CCCGTCTTGAGACCTAGTTTCCAGCCAGCAAAGTGCATGCTGGTGATCTTGCCCATGGTG 8283 Query 70909 GGATCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCA 70968 ||||| |||||||| || | ||||| ||| || ||||| || || | || ||| Sbjct 8282 GGATCTTTCATGTGAATGTTTAGAGACTGCGATTGGTCAATGAAAGCACCACGATCAGCA 8223 Query 70969 GCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATA 71028 ||||||| | | || || | ||| ||||||| || || || | |||||| Sbjct 8222 GCCATTTGCACAACTGTACGCTGGGAAATCTCCCAAACGGTCTTGTACAGAGCTTTAATA 8163 Query 71029 TCTTCTGGAAGGTTTG---TATTCTGAATGGATCCACCATCTGCAATAATCCTATTTTTG 71085 || | |||| | | | | ||||| ||||| ||| || |||||||| | ||| || Sbjct 8162 TCAGCAGGAATGCTAGAGATGTTCTGGATGGAGCCATTGTCCGCAATAATGCGATTCTTC 8103 Query 71086 ATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACTACT 71145 || | ||| |||||| ||| || | | || || || || || || Sbjct 8102 ATGTTGTCAGACCATAAACCAAGATCGACTAGGTCACGTAGAAGCCAGGGGTTGACGACC 8043 Query 71146 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACTGAC 71205 || || || |||| | || | || |||||| || || |||||||| | || Sbjct 8042 TGGAACTCGCCAGCAAGAACGCGGCGCTGGTAAATGTTGGATGTGTACGGTTCGAAGCAC 7983 Query 71206 TCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGACTA 71265 ||||| || |||||||| || | || || || ||||| ||||| || | ||| | Sbjct 7982 TCATTGTTGCCCAAAATCTGCGACGTGCTGGCTGTAGGCATGGGTGCAACTAGAAGAGAA 7923 Query 71266 TTTCTAAGACCATG-TGATCGGATTTTATCTTTTAGAGATTCCCAATTCCAAAGATC 71321 || | | |||||| || | || || || |||||||| ||| | ||| || || Sbjct 7922 TTGCGTACACCATGCTGCT-TAATCTTCTCCTTTAGAGAAGTCCAGTCCCACAGGTC 7867 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671129023851880