Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20platani_20[genbank_20GCA_5F000978885.1_202015-04-23] 1,213 sequences; 29,181,415 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq338 122 2e-22 seq145 116 9e-21 >seq338 Length=64627 Score = 122 bits (134), Expect = 2e-22 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 ||||||||||||||||| || ||||| || || || | || || || || || |||||| Sbjct 52271 GTAGATTCTTTCTGAATGTTGTAGTCCGAAAGGGTACGGCCATCCTCGAGCTGCTTTCCA 52330 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 |||||||| || | ||| ||||| || || || || || |||||||| ||||| | || Sbjct 52331 GCAAAAATGAGACGCTGCTGATCCGGGGGGATACCCTCCTTATCCTGGATCTTGGACTTG 52390 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | |||||| | || || || || ||||| ||||| || || | || Sbjct 52391 ACATTGTCAATGGTATCAGAGGACTCGACTTCGAGGGTAATGGTCTTGCCCGTCAAGGTC 52450 Query 104543 TTTACAAATATCTGCAT 104559 || || || || ||||| Sbjct 52451 TTGACGAAGATTTGCAT 52467 Score = 104 bits (114), Expect = 5e-17 Identities = 135/187 (72%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 ||||||||||||||||| || ||||| || || || | || || || || || ||||| Sbjct 52499 GTAGATTCTTTCTGAATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCAAGCTGCTTTCCG 52558 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || || | ||| || || ||||| || || || || ||||| ||||| | || Sbjct 52559 GCGAAGATGAGACGCTGCTGGTCCGGAGGGATACCCTCCTTGTCCTGGATCTTGGACTTG 52618 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | ||| ||| | || || || || ||||| ||||| || ||||| || Sbjct 52619 ACGTTGTCAATGGTGTCGGAGGACTCGACTTCGAGGGTAATGGTCTTTCCGGTAAGGGTC 52678 Query 104543 TTTACAA 104549 || |||| Sbjct 52679 TTGACAA 52685 >seq145 Length=91869 Score = 116 bits (128), Expect = 9e-21 Identities = 143/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 104372 TTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATT 104431 |||||||| || |||||||| || || | || || || || || || ||||| || || Sbjct 6022 TTCTGAATGTTGTAGTCAGACAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATC 6081 Query 104432 AGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCT 104491 || | ||| || || || || || || || || ||||||||||| | || ||||| || Sbjct 6082 AGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCG 6141 Query 104492 ACGGTATCGCTAGG-TTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAA 104550 | ||| || | ||| || ||||| || ||||| |||||||| ||||| || || || || Sbjct 6142 ATGGTGTC-CGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTAAGGGTCTTGACGAA 6200 Query 104551 TATCTGCATTTTG 104563 |||||||| ||| Sbjct 6201 AATCTGCATCTTG 6213 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151380505469804