Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20platani_20[genbank_20GCA_5F000978885.1_202015-04-23] 1,213 sequences; 29,181,415 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq275 181 2e-41 seq81 109 9e-20 >seq275 Length=77378 Score = 181 bits (200), Expect = 2e-41 Identities = 203/269 (75%), Gaps = 2/269 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||| |||| ||| |||||| || ||||| || || ||||| ||||| |||| Sbjct 59797 CGCCAAGCGTCACCGCAAGAT-TCTTCGTGACAACATTCAGGGTATCACAAAGCCTGCTA 59855 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 | |||||||| || ||||||||||| ||||||||| |||| | || | ||||| || | Sbjct 59856 TTCGTCGTCTTGCCCGTCGTGGTGGTGTCAAGCGTATCTCGGCCATGATTTATGAGGAAA 59915 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 |||| |||| | ||| |||||| | || |||| ||||||| || || |||| Sbjct 59916 CCCGTGGTGTTCTCAAGTCCTTCCTTGAAGGTGTAATCCGTGATGCTGTCACATACACCG 59975 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || || |||||||| ||||| ||||| | |||||||| |||| | |||| Sbjct 59976 AGCACGCCAAGCGCAAGACTGTTACCTCTCTGGATGTTGTCTATGCTCTGAAGAGACAAG 60035 Query 16671 GCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||| | | || ||||| || ||||| Sbjct 60036 GCCGCACTCTGTACGGTTTCGGTGGTTAA 60064 >seq81 Length=94103 Score = 109 bits (120), Expect = 9e-20 Identities = 87/102 (85%), Gaps = 2/102 (2%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||| |||| ||| |||||| || ||||| || || ||||||||||| || | Sbjct 22484 CGCCAAGCGTCACCGCAAGAT-TCTTCGTGACAACATTCAGGGTATCACCAAGCCTGCCA 22426 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTG 16532 |||||||||| |||||||||||||| ||||||||| | |||| Sbjct 22425 TCCGTCGTCTCGCTCGTCGTGGTGGTGTCAAGCGTATTTCTG 22384 Score = 98.7 bits (108), Expect = 2e-16 Identities = 125/172 (73%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 16528 CTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTAT 16587 |||| | || |||| ||||||| ||||| ||| | ||| |||||| || || || Sbjct 22319 CTCTTTAGTGATCTACGAAGAGACTCGTGGTGTCCTCAAGTCCTTCCTTGAGGGTGTCAT 22260 Query 16588 CCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATAT 16647 || ||| ||| || ||| ||||||||||| || || ||||| || ||||| | ||| | Sbjct 22259 CCGTGACGCTGTCACCTACACCGAGCACGCCAAGCGCAAGACCGTTACCTCGCTCGATGT 22200 Query 16648 CGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||||||||| | || || || ||||||| | || ||||| || ||||| Sbjct 22199 CGTCTATGCCCTCAAGCGCCAGGGCCGTACCCTCTACGGTTTCGGTGGTTAA 22148 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79074090945609