Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20platani_20[genbank_20GCA_5F000978885.1_202015-04-23] 1,213 sequences; 29,181,415 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq411 156 5e-33 seq101 150 2e-31 >seq411 Length=11963 Score = 156 bits (172), Expect = 5e-33 Identities = 596/918 (65%), Gaps = 32/918 (3%) Strand=Plus/Minus Query 63163 CCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTC---ACTC 63219 |||| || || ||||||| || ||||| | | ||| || |||| |||| || | Sbjct 7213 CCAAGCCGGGGCATTCATTGGGGCACATGAGAGTCCAGTCC---TCATTCTTCTCAACAC 7157 Query 63220 GTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCT 63279 | ||||| || | || ||||| || || | ||||| || | | | ||| | Sbjct 7156 GCTTCATGAACAAGTCGCAGATCCACAGGGCCAAGAATAGGTCACGAGCACGGACTTCTT 7097 Query 63280 CGTTTCCTGTATTCTTTT-TAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCC 63338 | ||||| ||||| |||| ||||||||| | | | ||||| |||||| || || Sbjct 7096 CCTTTCCGTGGTTCTTGCGTAAG-TCGAGGAACTCGAAGACATCAGCATGCCATGGCTCG 7038 Query 63339 AAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTG 63398 | || ||||| | ||||||| || |||||||| ||||| || | || | |||||| Sbjct 7037 AGATAAATGGCAAAGGCTCCAGGTCGCTTGTTTCCACCCTGGTCAACATAACGGGCGGTG 6978 Query 63399 TTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATA 63458 || || |||| | | ||| |||| || ||||| || |||| || || || | || Sbjct 6977 TTGTTGAAAACACGTAGCATGGGAACGATGCCGTTCGAAGTACCGTTAGTGCCAGCAATG 6918 Query 63459 TAGCTTCCACTGGCACGAATA--TTACTAATTGATAGACCTATTCCCCCTGCCATTTTAG 63516 || ||| ||||||||||| | |||| ||||| || || || ||||| || | Sbjct 6917 TAAGAGCCAGTGGCACGAATACGGTGAACATTG--AGACCGATACCACCAGCCATCTTGG 6860 Query 63517 AGATTAATGCGCATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCATGT 63576 | || | || || || | || || || || ||||| ||||| ||||| |||||| Sbjct 6859 AAATCATGGCACAAGTCTTGAGGGTATCGTAAATGCCCTCGATGCTGTCATCCTTCATGT 6800 Query 63577 TAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAG 63636 | ||| ||||| ||||| || | ||| || |||||||| | ||||| | Sbjct 6799 CGACTAGGAAACATGAAGACAACTGAGCCTGGGGAGTACCGGCATTAAAGAGCGTAGGTG 6740 Query 63637 AAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAA-TAGCTGA--GTCTA 63693 | ||||| || || | || ||| | || ||||| || |||| | || | || Sbjct 6739 ATGCGTGAGTGAAGAACTTGCTAGACATAAGGTTGTAGGTTTCAAGCACACGATCGACTT 6680 Query 63694 T---ATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAA 63750 | | |||| ||| || || || |||||||||| ||||||||| || | |||| Sbjct 6679 TGTCACCCCA------AATACCCACAGCAACACGCATTATCATGTGCTGGGGACGCTCAA 6626 Query 63751 CGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGT 63810 | ||||| | | ||| | | ||| || || | || ||||| ||||| || | Sbjct 6625 CAATCTTACCATCAAGTTTGAGTAGGTACGAACGCTCGAGCGTCTTAAAGCCAAAGTACT 6566 Query 63811 TGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAA 63870 ||| ||||| || ||||| | ||| | |||| || | |||||| | ||| Sbjct 6565 GGTAGTTGAAGTCACGGTCGTACACAATGGCAGAGTCCAGCTCATCCTTGTGACGCATAA 6506 Query 63871 CTATATCCATGGTGATACTT--GAAATAATCGGAGAATGTTTCCCATTTTTAGGATTAAC 63928 | | ||| || ||| || || || || || ||| | || || ||||| Sbjct 6505 -TGCACTCAT-ATGTCTCTTTGGAGATCATAGGGGAGGCTTTACGGTTCGCGGGGTTAAC 6448 Query 63929 ATAGTTGAATAAATCCTCCATCACTTCACTA-AATAGtttttttGTTTCCTTGTGTAGAT 63987 ||||| | | | || || ||| || | || | || || |||| |||||| |||| Sbjct 6447 ATAGTGGTAAAGGTCAGACACCAC-CGACGACCATTGCTTCTTGGTTTGCTTGTGAAGAT 6389 Query 63988 TTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAGT-G 64046 | || || || || | |||||| || ||||||||||| ||||| |||| | || || | Sbjct 6388 TAGAGACAGCAATACGGGCGGCCAGGATGGCATAATCGGGATG-TGTGACGGTCATGTAG 6330 Query 64047 GCTGCTATTTCGGCTGCC 64064 || || ||||||| ||| Sbjct 6329 GCGGCAGTTTCGGCGGCC 6312 >seq101 Length=72697 Score = 150 bits (166), Expect = 2e-31 Identities = 380/572 (66%), Gaps = 18/572 (3%) Strand=Plus/Plus Query 33295 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAA 33354 |||| || || || || ||| |||||| ||||| || | | ||| || ||||| || Sbjct 40990 AACAGCAGGCAAGCAAAGTCGGTGTGCAGGCCCTCATCACGAGAAATAAGCTCGTTTGAG 41049 Query 33355 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCA 33414 || || || || ||||| || |||||||| ||||| || ||||| ||||| | || Sbjct 41050 AAGGTCAGACCAGGCATGAGACCACGCTTGCGCAGCCAGAAGATGGAGGCGAAGGCGCCT 41109 Query 33415 GAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAAC--CGGCGC 33472 || || ||||| || || || ||||||||||||| || | || || ||| || | | Sbjct 41110 GAGAAAAAGATGCCCTCGACAGCAGCAAAGGCAACTAGGCGCTGGGCA-AACGTCGACTC 41168 Query 33473 --TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTC 33530 |||| |||||||| ||||||| |||||||| | || || || || || Sbjct 41169 CTTGTCGGTGATCCACTTCAGAGCCCAGTCGGCCTTGCGGCGGATGCAGGGAATAGTGTC 41228 Query 33531 TATGGCATTAAAGAGATAGtttttttCATTACTA----TCTTTAACATAAGTATCGATCA 33586 |||||||| || || || | | | || | | || || | || || || |||| Sbjct 41229 AATGGCATTGAACAGGTA----TGTGCGTTGCGAGGGCTCCTTGATGTAGGTGTCAATCA 41284 Query 33587 AAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATC 33646 || || |||| || || |||||||| || ||||| || |||||||| || | Sbjct 41285 GCAGCGAGTAGGTTTCAGAGTGGATGTTTTCCATCATGATCTGGAAACCGTAGAAGCAGC 41344 Query 33647 TAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTC 33706 ||||||| ||||| || || | || || || | | |||||| || || || | Sbjct 41345 GGGCCTCGGGGATCTGCACCTCGCCTGAGAAGCGCTCAACGAGATTTTCGTTGACGATGC 41404 Query 33707 CGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT- 33765 | ||| ||| ||||| || || | | || || || || | |||||| |||| Sbjct 41405 CATCAGAGGCAGCAAAGAAGGCAAGAATGTGGGAGATGAAGTACTGCTCGTCT-TTGTTC 41463 Query 33766 ---AGTTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAAT 33822 | || ||||| || | || ||| ||||| | ||| | || || | ||||| || Sbjct 41464 AGACGGTTGTTCCAGTCGTGGAGATCCTTAGAGAGATCAATCTCCTCAGCAGTCCAGAAG 41523 Query 33823 GATGCCTCTGCCTTTTTATACATGTTCCAGAT 33854 || ||||| ||||| || ||||| | |||||| Sbjct 41524 GAGGCCTCGGCCTTCTTGTACATCTGCCAGAT 41555 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622937754563080