Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20platani_20[genbank_20GCA_5F000978885.1_202015-04-23]
1,213 sequences; 29,181,415 total letters
Query= NC_006998.1
Length=194711
Score E
Sequences producing significant alignments: (Bits) Value
seq411 156 5e-33
seq101 150 2e-31
>seq411
Length=11963
Score = 156 bits (172), Expect = 5e-33
Identities = 596/918 (65%), Gaps = 32/918 (3%)
Strand=Plus/Minus
Query 63163 CCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTC---ACTC 63219
|||| || || ||||||| || ||||| | | ||| || |||| |||| || |
Sbjct 7213 CCAAGCCGGGGCATTCATTGGGGCACATGAGAGTCCAGTCC---TCATTCTTCTCAACAC 7157
Query 63220 GTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCT 63279
| ||||| || | || ||||| || || | ||||| || | | | ||| |
Sbjct 7156 GCTTCATGAACAAGTCGCAGATCCACAGGGCCAAGAATAGGTCACGAGCACGGACTTCTT 7097
Query 63280 CGTTTCCTGTATTCTTTT-TAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCC 63338
| ||||| ||||| |||| ||||||||| | | | ||||| |||||| || ||
Sbjct 7096 CCTTTCCGTGGTTCTTGCGTAAG-TCGAGGAACTCGAAGACATCAGCATGCCATGGCTCG 7038
Query 63339 AAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTG 63398
| || ||||| | ||||||| || |||||||| ||||| || | || | ||||||
Sbjct 7037 AGATAAATGGCAAAGGCTCCAGGTCGCTTGTTTCCACCCTGGTCAACATAACGGGCGGTG 6978
Query 63399 TTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATA 63458
|| || |||| | | ||| |||| || ||||| || |||| || || || | ||
Sbjct 6977 TTGTTGAAAACACGTAGCATGGGAACGATGCCGTTCGAAGTACCGTTAGTGCCAGCAATG 6918
Query 63459 TAGCTTCCACTGGCACGAATA--TTACTAATTGATAGACCTATTCCCCCTGCCATTTTAG 63516
|| ||| ||||||||||| | |||| ||||| || || || ||||| || |
Sbjct 6917 TAAGAGCCAGTGGCACGAATACGGTGAACATTG--AGACCGATACCACCAGCCATCTTGG 6860
Query 63517 AGATTAATGCGCATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCATGT 63576
| || | || || || | || || || || ||||| ||||| ||||| ||||||
Sbjct 6859 AAATCATGGCACAAGTCTTGAGGGTATCGTAAATGCCCTCGATGCTGTCATCCTTCATGT 6800
Query 63577 TAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAG 63636
| ||| ||||| ||||| || | ||| || |||||||| | ||||| |
Sbjct 6799 CGACTAGGAAACATGAAGACAACTGAGCCTGGGGAGTACCGGCATTAAAGAGCGTAGGTG 6740
Query 63637 AAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAA-TAGCTGA--GTCTA 63693
| ||||| || || | || ||| | || ||||| || |||| | || | ||
Sbjct 6739 ATGCGTGAGTGAAGAACTTGCTAGACATAAGGTTGTAGGTTTCAAGCACACGATCGACTT 6680
Query 63694 T---ATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAA 63750
| | |||| ||| || || || |||||||||| ||||||||| || | ||||
Sbjct 6679 TGTCACCCCA------AATACCCACAGCAACACGCATTATCATGTGCTGGGGACGCTCAA 6626
Query 63751 CGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGT 63810
| ||||| | | ||| | | ||| || || | || ||||| ||||| || |
Sbjct 6625 CAATCTTACCATCAAGTTTGAGTAGGTACGAACGCTCGAGCGTCTTAAAGCCAAAGTACT 6566
Query 63811 TGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAA 63870
||| ||||| || ||||| | ||| | |||| || | |||||| | |||
Sbjct 6565 GGTAGTTGAAGTCACGGTCGTACACAATGGCAGAGTCCAGCTCATCCTTGTGACGCATAA 6506
Query 63871 CTATATCCATGGTGATACTT--GAAATAATCGGAGAATGTTTCCCATTTTTAGGATTAAC 63928
| | ||| || ||| || || || || || ||| | || || |||||
Sbjct 6505 -TGCACTCAT-ATGTCTCTTTGGAGATCATAGGGGAGGCTTTACGGTTCGCGGGGTTAAC 6448
Query 63929 ATAGTTGAATAAATCCTCCATCACTTCACTA-AATAGtttttttGTTTCCTTGTGTAGAT 63987
||||| | | | || || ||| || | || | || || |||| |||||| ||||
Sbjct 6447 ATAGTGGTAAAGGTCAGACACCAC-CGACGACCATTGCTTCTTGGTTTGCTTGTGAAGAT 6389
Query 63988 TTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAGT-G 64046
| || || || || | |||||| || ||||||||||| ||||| |||| | || || |
Sbjct 6388 TAGAGACAGCAATACGGGCGGCCAGGATGGCATAATCGGGATG-TGTGACGGTCATGTAG 6330
Query 64047 GCTGCTATTTCGGCTGCC 64064
|| || ||||||| |||
Sbjct 6329 GCGGCAGTTTCGGCGGCC 6312
>seq101
Length=72697
Score = 150 bits (166), Expect = 2e-31
Identities = 380/572 (66%), Gaps = 18/572 (3%)
Strand=Plus/Plus
Query 33295 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAA 33354
|||| || || || || ||| |||||| ||||| || | | ||| || ||||| ||
Sbjct 40990 AACAGCAGGCAAGCAAAGTCGGTGTGCAGGCCCTCATCACGAGAAATAAGCTCGTTTGAG 41049
Query 33355 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCA 33414
|| || || || ||||| || |||||||| ||||| || ||||| ||||| | ||
Sbjct 41050 AAGGTCAGACCAGGCATGAGACCACGCTTGCGCAGCCAGAAGATGGAGGCGAAGGCGCCT 41109
Query 33415 GAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAAC--CGGCGC 33472
|| || ||||| || || || ||||||||||||| || | || || ||| || | |
Sbjct 41110 GAGAAAAAGATGCCCTCGACAGCAGCAAAGGCAACTAGGCGCTGGGCA-AACGTCGACTC 41168
Query 33473 --TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTC 33530
|||| |||||||| ||||||| |||||||| | || || || || ||
Sbjct 41169 CTTGTCGGTGATCCACTTCAGAGCCCAGTCGGCCTTGCGGCGGATGCAGGGAATAGTGTC 41228
Query 33531 TATGGCATTAAAGAGATAGtttttttCATTACTA----TCTTTAACATAAGTATCGATCA 33586
|||||||| || || || | | | || | | || || | || || || ||||
Sbjct 41229 AATGGCATTGAACAGGTA----TGTGCGTTGCGAGGGCTCCTTGATGTAGGTGTCAATCA 41284
Query 33587 AAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATC 33646
|| || |||| || || |||||||| || ||||| || |||||||| || |
Sbjct 41285 GCAGCGAGTAGGTTTCAGAGTGGATGTTTTCCATCATGATCTGGAAACCGTAGAAGCAGC 41344
Query 33647 TAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTC 33706
||||||| ||||| || || | || || || | | |||||| || || || |
Sbjct 41345 GGGCCTCGGGGATCTGCACCTCGCCTGAGAAGCGCTCAACGAGATTTTCGTTGACGATGC 41404
Query 33707 CGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT- 33765
| ||| ||| ||||| || || | | || || || || | |||||| ||||
Sbjct 41405 CATCAGAGGCAGCAAAGAAGGCAAGAATGTGGGAGATGAAGTACTGCTCGTCT-TTGTTC 41463
Query 33766 ---AGTTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAAT 33822
| || ||||| || | || ||| ||||| | ||| | || || | ||||| ||
Sbjct 41464 AGACGGTTGTTCCAGTCGTGGAGATCCTTAGAGAGATCAATCTCCTCAGCAGTCCAGAAG 41523
Query 33823 GATGCCTCTGCCTTTTTATACATGTTCCAGAT 33854
|| ||||| ||||| || ||||| | ||||||
Sbjct 41524 GAGGCCTCGGCCTTCTTGTACATCTGCCAGAT 41555
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 622937754563080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |