Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20platani_20[genbank_20GCA_5F000978885.1_202015-04-23] 1,213 sequences; 29,181,415 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq338 136 4e-27 seq411 125 7e-24 seq101 125 7e-24 seq64 116 3e-21 seq145 113 4e-20 >seq338 Length=64627 Score = 136 bits (150), Expect = 4e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| |||| |||||| || || || | || |||||||| || |||||||| ||| Sbjct 52012 GCCACCACGCAGACGCAGAACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGGA 52071 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | |||||| ||||| |||||||| || ||| |||| | ||||||||| |||||||| Sbjct 52072 GAGGGTGCGGCCATCCTCAAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGATCCGGAGG 52131 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| || || ||||| ||| || |||| | || | ||||| | |||||||| Sbjct 52132 GATACCCTCCTTGTCCTGGATCTTGGATTTGACATTGTCAATGGTATCAGAGGACTCGAC 52191 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| ||||| ||| || || || | || || ||||| || ||||| Sbjct 52192 TTCGAGGGTAATGGTCTTGCCCGTCAAGGTCTTGACGAAGATTTGCAT 52239 Score = 136 bits (150), Expect = 4e-27 Identities = 159/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| |||||| || || || | || || || || ||||||||||| ||| Sbjct 52469 CCACCACGCAGACGCAGGACCAAGTGAAGAGTAGATTCTTTCTGAATGTTGTAGTCGGAG 52528 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| ||||| |||||||| || ||| |||| | ||||||||||||||||||| Sbjct 52529 AGGGTGCGGCCATCCTCAAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAGGG 52588 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||||| | || | || |||| |||||||| Sbjct 52589 ATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTGTCGGAGGACTCGACT 52648 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTAC 131222 |||| ||||| ||| || ||||| || || || || Sbjct 52649 TCGAGGGTAATGGTCTTTCCGGTAAGGGTCTTGAC 52683 Score = 127 bits (140), Expect = 2e-24 Identities = 150/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| || ||||||| ||| | || |||||||| ||||||||||| ||| | Sbjct 52753 CCACCACGCAGGCGGAGCACTAGATGGAGAGTAGACTCCTTCTGAATGTTGTAGTCGGAC 52812 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| ||||| |||||||| || ||| |||| | ||||||||||||||||||| Sbjct 52813 AGGGTGCGGCCATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGG 52872 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||| | | || | |||||| | ||||| | Sbjct 52873 ATACCCTCCTTGTCCTGGATCTTAGACTTAACGTTGTCAATAGTATCCGAAGACTCCACC 52932 Query 131188 TCGACGGTAACGGTTTTACCGGT 131210 |||| ||| | ||| || || || Sbjct 52933 TCGAGGGTGATGGTCTTGCCAGT 52955 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| |||||| || || || | || || || || ||||||||||| || Sbjct 52241 CCACCACGCAGACGCAGAACCAAGTGAAGAGTAGATTCTTTCTGAATGTTGTAGTCCGAA 52300 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || ||||| |||||||| || || | || | ||||||||| ||||| ||| Sbjct 52301 AGGGTACGGCCATCCTCGAGCTGCTTTCCAGCAAAAATGAGACGCTGCTGATCCGGGGGG 52360 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || || || ||| || ||||| | || | ||||| | |||||||| Sbjct 52361 ATACCCTCCTTATCCTGGATCTTGGACTTGACATTGTCAATGGTATCAGAGGACTCGACT 52420 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| ||||| ||| || || || | || || ||||| || ||||| Sbjct 52421 TCGAGGGTAATGGTCTTGCCCGTCAAGGTCTTGACGAAGATTTGCAT 52467 >seq411 Length=11963 Score = 125 bits (138), Expect = 7e-24 Identities = 699/1111 (63%), Gaps = 11/1111 (1%) Strand=Plus/Minus Query 145058 TTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTGAAGGGT 145117 ||||||||||| |||||||| || | || || ||| || | ||| || ||| | ||| Sbjct 8051 TTGACGACCTGGAACTCGCCAGCAAGAACGCGGCGCTGGTAAATGTTGGATGTGTACGGT 7992 Query 145118 TCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCCACC 145177 || || |||| || ||||||| || || | || | || || |||||| || || Sbjct 7991 TCGAAGCACTCATTGTTGCCCAAAATCTGCGACGTGCTGGCTGTAGGCATGGGTGCAACT 7932 Query 145178 AATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCAATCCCAT 145237 | | |||||||| | || |||| ||| || | |||||||| | | ||| ||||| Sbjct 7931 AGAAGAGAATTGCGTACACCATGCTGCTTAATCTTCTCCTTTAGAGAAGTCCAGTCCCAC 7872 Query 145238 AGCGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCGCTGGCGGGGCTG 145297 || | | || |||| |||||||| || ||||||| ||||| | | | | || Sbjct 7871 AGGTCACTAGGAGTCACATCCCACATATCAAACTGCAAGATGCCTTGGGAGACAGGAGAA 7812 Query 145298 CCTTGAAAGGAACTGTAACTGCCCCAAGTTTTGGCGAGCTCGCAACTCGCCTCCAGAGCG 145357 || | | | | |||| | ||| || | ||||| || || || ||| Sbjct 7811 CCCTCATAAGTTGAGTAAGTACCCTCCGTCTGGGCGATTTCCATTGAAGCAGTTAGTGCG 7752 Query 145358 CCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATCGCTTCATCGCTCTCGTAC 145417 || || || || || ||| ||| |||||||| | |||||| | || | Sbjct 7751 GCGTGGTAGATGGTTTCAAAAATCTGCTTGTTGAGCTGGCGTGCTTCAGGGGATTCAAAA 7692 Query 145418 GGCATGCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCACGCCGATGGGCCGA 145477 |||||||| || | ||||| || || || ||||||| || || || ||||| || Sbjct 7691 GGCATGCGGAGAGCAAGGAAAGCGTCAGCCAGGCCCTGTACACCGACACCAATGGGACGG 7632 Query 145478 TGTTTCATGTTGCTCATCCTCGCCGACTCGATAGGATATCGATTACGGTCGATAATTTTA 145537 || ||||||||| | || || || ||| || |||| ||||| || Sbjct 7631 TGGCGCATGTTGCTGTTGTGAGCTTCCTGGACAGGGTAGTGATTCACATCGATGATGCGG 7572 Query 145538 TTCAAGTTTCGCACTACTACCTTTGTAATGTGCCGCAACTTTTCAAAGTCAAACCGAGCC 145597 || | ||| || || || || | || | | | | ||||| ||||||| || | || Sbjct 7571 TTTAGGTTGCGAACAACAACTTGGGTGACTTCGTGTAGCTTTTTAAAGTCATACTCACCC 7512 Query 145598 TCGTCAACGACCACACAGCTATTGACGGCGATCGACGCCAAATTACAAACTGCCGTCTCC 145657 | || | |||| || | | ||||| || || | || || || || ||| Sbjct 7511 TTGTTGTAGTCCACGAAGGAAGGAAGGGCGAGAGATGCTAGGTTGCACACAGCGACCTCA 7452 Query 145658 TCGGCGTCGCTGTATTGTACGATCTCGGCGCACAAATTGCTACATTTGATGGTTCCCAGA 145717 || | | | | ||| | | ||||| | ||||| || || ||||| || ||| Sbjct 7451 TCAGGGGCACAGTACTCGATAATCTCAGTGCACAGGTTCGAACTGCGAATGGTACCTAGA 7392 Query 145718 TTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGGTCCGCCAGTC 145777 |||| |||||| || || | |||||| ||| ||||||||||| | || ||||||| Sbjct 7391 TTTTTCTGATTGCTCTTGCGGTTGCAGTGGTCTTTGTAGAGCATAAAAGGGTTGCCAGTC 7332 Query 145778 TCCACCTGCGTCTCCACGATAAAACGGTGCAAGTCCTGCGCACGCACCTGC-TGCTGGTA 145836 || ||| | ||||| || | || | ||| || || | ||| | Sbjct 7331 TCAGTCTGAGCCTCCAGAATGGCATACCACAGTTTCTGGGCCTTGACAACCATGC-GACC 7273 Query 145837 GCGGCCCTCTTCTTCGTA--TTTCCTGTAGAGCTCCTCAAACGCGGAACCGTAGCAATCG 145894 ||||||||| | ||||| |||| | |||| |||||||| | || |||||||| Sbjct 7272 GCGGCCCTCCTTCTCGTACTTTTCATACAGAG--CCTCAAACTCTTCGCCATAGCAATCC 7215 Query 145895 GACAGGCCGGGACACTTGTTGGGACACATCAGCGACCATACGCCGTTGGCGTTGACGCGC 145954 | || |||||| || | ||||| ||||| || | ||| | | || | || ||| Sbjct 7214 GCCAAGCCGGGGCATTCATTGGGGCACATGAGAGTCCAGTCCTCATTCTTCTCAACACGC 7155 Query 145955 TCCATAAACAAATCTGGCACCCACAGCGCGTACATCAAGTCGCGCGCTTTGCAATCCTCA 146014 | ||| ||||| || | |||||| || | | | ||| || || | || || Sbjct 7154 TTCATGAACAAGTCGCAGATCCACAGGGCCAAGAATAGGTCACGAGCACGGACTTCTTCC 7095 Query 146015 GCACCCATGTT-TCGCTTCAAATTAAGCACACTATAGATGTCCGCGTGCCACGGTTCAAT 146073 || ||| | || | | | | || | | ||| || || ||||| || || | Sbjct 7094 TTTCCGTGGTTCTTGCGTAAGTCGAGGAACTCGA-AGACATCAGCATGCCATGGCTCGAG 7036 Query 146074 ATAGACGGCGAGGGCTCCTTTTCGTTTG---CCACCCTGGTCCACGTGACGTACCATGTT 146130 ||| | ||| | |||||| ||| ||| ||||||||||| || | ||| | |||| Sbjct 7035 ATAAATGGCAAAGGCTCCAGGTCGCTTGTTTCCACCCTGGTCAACATAACGGGCGGTGTT 6976 Query 146131 GTTAAAGACGCGCACCATGGGCTCGACGCCG 146161 ||| || || || | |||||| ||| |||| Sbjct 6975 GTTGAAAACACGTAGCATGGGAACGATGCCG 6945 >seq101 Length=72697 Score = 125 bits (138), Expect = 7e-24 Identities = 355/539 (66%), Gaps = 15/539 (3%) Strand=Plus/Minus Query 46063 CTGCTTAATGCGTTTGAACGTATGCCGTGCGTGCGCAAGAAAACCGACTGGGCGATGAAG 46122 ||| | ||||| |||| ||| || ||| | ||| || |||||||||| ||||| Sbjct 41243 CTGTTCAATGCCATTGACACTATTCCCTGCATCCGCCGCAAGGCCGACTGGGCTCTGAAG 41184 Query 46123 TGGATCAACAGCAGCACCGCGACTTTCGCCGAGCGTATGGTGGCCTTTGCGATTGTGGAG 46182 ||||||| | || |||| || ||| |||| | || |||||||| ||| ||| Sbjct 41183 TGGATCACCGACAAGGAGTCGACGTTTGCCCAGCGCCTAGTTGCCTTTGCTGCTGTCGAG 41124 Query 46183 GGCGTCtttttttCTGGCAGTTTTGCCGCCATCTT-TTACATCAAAACCAAGGGCATCAT 46241 ||| ||||||| || ||| || ||| ||||||| | | | || | || | |||| Sbjct 41123 GGCATCTTTTTCTCAGGCGCCTTCGCCTCCATCTTCTGGCTGCGCAAGCGTGGTC-TCAT 41065 Query 46242 GCCCGGCCTGACGTTTAGCAACGAGCTGATATCGCGCGACGAGGGCCTGCATACGGACTT 46301 ||| || ||||| || |||||||| || || || || ||||||||||| || ||||| Sbjct 41064 GCCTGGTCTGACCTTCTCAAACGAGCTTATTTCTCGTGATGAGGGCCTGCACACCGACTT 41005 Query 46302 TGCGTGTCTCTACTATAACACTCGCGTGCACGACAAGCTTGCGCC-----CGACACCGTG 46356 ||| || || || | ||||| | | |||| | || || ||| ||| Sbjct 41004 TGCTTG--CCTGCTGT---TCTCGCAT-CTGAACAACC--GCCCCAGCAAGGACCTTGTG 40953 Query 46357 CTGAGCATGTTCAAGGAGGCGGTGGCCATTGAGAAGGAGTTTTTTACGGCCGCACTGCCC 46416 | | || ||| || || || | || ||||||||||| | || | || |||||| Sbjct 40952 CAAAAGATCATCACTGATGCCGTCGTGATCGAGAAGGAGTTCCTGACCGAGGCTCTGCCC 40893 Query 46417 GCTGCCCTGCTGGGCATGAACGCACAGTCAATGTGCGACTACATCGAGTTTGTAGCGGAC 46476 | ||||| || |||||||| | ||| | ||||| |||||||| || ||| Sbjct 40892 TGCGGTCTGCTAGGAATGAACGCCGATCTGATGAAGCAGTACATTGAGTTTGTTGCTGAC 40833 Query 46477 CGACTGCTCGTGCAGCTTCACCAGCCGAAGCATTTTCACGCGCGCAATCCATTTGAGTTT 46536 || || || || || | | |||| | | || || ||||| || || Sbjct 40832 CGCCTACTTGTTGCTCTAGGCAACGAGAAGGTGTACCGTGCCACAAACCCATTCGACTTC 40773 Query 46537 ATGAACAACATCTCCCTGGAGGGCAAAACTAATTTTTTCGAAAAGCGCGTCGGCGAGTA 46595 ||| | |||||||| || | ||||| ||||| || || || ||||| |||||||| || Sbjct 40772 ATGGAGAACATCTCGCTCGGCGGCAAGACTAACTTCTTTGAGAAGCGTGTCGGCGACTA 40714 >seq64 Length=146407 Score = 116 bits (128), Expect = 3e-21 Identities = 157/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| ||||| || | || | ||| |||||||| || |||||||| ||| | Sbjct 70964 CCACCACGCAGGCGCAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 70905 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| ||||| |||||||| || || |||| || |||||||||||||| || Sbjct 70904 AGAGTGCGGCCATCCTCAAGCTGCTTACCAGCAAAGATCAAGCGCTGCTGGTCCGGGGGA 70845 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||||| | || | || || | ||||||| Sbjct 70844 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATCGTGTCCGAAGACTCGACC 70785 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAA 131226 || | ||||| ||| ||||| || || || || |||||| Sbjct 70784 TCCAGGGTAATGGTCTTACCCGTCAGGGTCTTGACGAAA 70746 >seq145 Length=91869 Score = 113 bits (124), Expect = 4e-20 Identities = 139/190 (73%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 131045 CCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGA 131104 |||| ||||||||||| || || |||||| ||||| ||||||||||| ||| ||| Sbjct 6020 CCTTCTGAATGTTGTAGTCAGACAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGA 6079 Query 131105 TTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCT 131164 | | |||||||||||||| || || || || ||||| || || ||||| | | Sbjct 6080 TCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGT 6139 Query 131165 CCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGA 131224 | | || || | |||||| | |||| ||||| || ||||| || || || || |||| Sbjct 6140 CGATGGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTAAGGGTCTTGACGA 6199 Query 131225 AAATCTGCAT 131234 |||||||||| Sbjct 6200 AAATCTGCAT 6209 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472005643105920