Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20platani_20[genbank_20GCA_5F000978885.1_202015-04-23]
1,213 sequences; 29,181,415 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq495 131 1e-25
seq338 89.7 3e-13
seq1044 82.4 5e-11
>seq495
Length=8336
Score = 131 bits (144), Expect = 1e-25
Identities = 86/95 (91%), Gaps = 5/95 (5%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
||||||||||||||||||||||||||||||||| |||||||||| || ||||||||
Sbjct 2727 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATGGTAGATAGGGACAGTGGGAATCTCGT 2786
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
| |||| ||||||||||||||||||||||||||||
Sbjct 2787 TGATCCATTCATGCGCGTCACTAATTAGATGACGA 2821
>seq338
Length=64627
Score = 89.7 bits (98), Expect = 3e-13
Identities = 157/229 (69%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148
||||||| | || ||||| ||||| |||||||| || || ||||| ||||| || |
Sbjct 52239 TACCACCACGCAGACGCAGAACCAAGTGAAGAGTAGATTCTTTCTGAATGTTGTAGTCCG 52298
Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208
| | ||| | || || | || ||||| ||||| || || || || ||||| | ||
Sbjct 52299 AAAGGGTACGGCCATCCTCGAGCTGCTTTCCAGCAAAAATGAGACGCTGCTGATCCGGGG 52358
Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268
||| || || || ||| || || ||| ||||| | | ||||| || |
Sbjct 52359 GGATACCCTCCTTATCCTGGATCTTGGACTTGACATTGTCAATGGTATCAGAGGACTCGA 52418
Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
|||| | ||||| || || ||||||||||| || ||||| || |||||
Sbjct 52419 CTTCGAGGGTAATGGTCTTGCCCGTCAAGGTCTTGACGAAGATTTGCAT 52467
>seq1044
Length=681
Score = 82.4 bits (90), Expect = 5e-11
Identities = 75/95 (79%), Gaps = 5/95 (5%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGG-----GTAATCTCGT 25956
||| ||||| ||||||||| |||||||||| ||| ||||| | ||||||||
Sbjct 180 AAGACCGTTGGCTTGGCTGTAATTTCGCTAGAGAGTGAGTAGGGACAGTAGAAATCTCGT 239
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
| |||| |||||||||||||| ||||| |||||||
Sbjct 240 TGATCCATTCATGCGCGTCACCAATTAAATGACGA 274
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 334942248329003
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |