Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20platani_20[genbank_20GCA_5F000978885.1_202015-04-23] 1,213 sequences; 29,181,415 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq411 152 7e-32 seq101 129 7e-25 >seq411 Length=11963 Score = 152 bits (168), Expect = 7e-32 Identities = 509/778 (65%), Gaps = 23/778 (3%) Strand=Plus/Minus Query 63153 TAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTC 63212 |||| ||||||||| | | | ||||| |||||| || || | || ||||| | ||| Sbjct 7077 TAAG-TCGAGGAACTCGAAGACATCAGCATGCCATGGCTCGAGATAAATGGCAAAGGCTC 7019 Query 63213 CAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACA 63272 |||| || |||||||| ||||| || | || | |||||||| || |||| | | || Sbjct 7018 CAGGTCGCTTGTTTCCACCCTGGTCAACATAACGGGCGGTGTTGTTGAAAACACGTAGCA 6959 Query 63273 TTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAA 63332 | |||| || || || || ||||| || || || | || || ||| ||||||||| Sbjct 6958 TGGGAACGATGCCGTTCGAAGTACCGTTAGTGCCAGCAATGTAAGAGCCAGTGGCACGAA 6899 Query 63333 TA--TTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTT 63390 || | |||| ||||| || || || ||||| || || || | || || || Sbjct 6898 TACGGTGAACATTG--AGACCGATACCACCAGCCATCTTGGAAATCATGGCACAAGTCTT 6841 Query 63391 TAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGA 63450 | ||||| || |||||||| || || |||||| |||||| | ||| ||||| ||| Sbjct 6840 GAGGGTATCGTAAATGCCCTCGATGCTGTCATCCTTCATGTCGACTAGGAAACATGAAGA 6781 Query 63451 CATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTT 63510 || || | ||| || |||||||| | ||||| || |||||||| || | || Sbjct 6780 CAACTGAGCCTGGGGAGTACCGGCATTAAAGAGCGTAGGTGATGCGTGAGTGAAGAACTT 6721 Query 63511 TTCAGAAAGTAGATTGTACGTCTCAA-TAGCTGA--GTCTAT---ATCCCATTGATGAAT 63564 ||| | || ||||| || |||| | || | || | | |||| ||| Sbjct 6720 GCTAGACATAAGGTTGTAGGTTTCAAGCACACGATCGACTTTGTCACCCCA------AAT 6667 Query 63565 TCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTT 63624 || || || |||||||||| ||||||||| || | ||||| ||||| | | ||| Sbjct 6666 ACCCACAGCAACACGCATTATCATGTGCTGGGGACGCTCAACAATCTTACCATCAAGTTT 6607 Query 63625 CAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTC 63684 | | ||| || || | || ||||| ||||| || | ||| ||||| || || Sbjct 6606 GAGTAGGTACGAACGCTCGAGCGTCTTAAAGCCAAAGTACTGGTAGTTGAAGTCACGGTC 6547 Query 63685 GTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCAT-GGTAATAC 63743 ||| | ||| | |||| || | |||||| | ||| | || ||| || Sbjct 6546 GTACACAATGGCAGAGTCCAGCTCATCCTTGTGACGCATAA-TGCACTCATATGTCTCTT 6488 Query 63744 TTGAAATAATAGGAAAATGTTTCCCATTTTTAGGATTGACATAGTTGAATAAATCCTCCA 63803 | || || ||||| | ||| | || || || ||||||| | | | || || Sbjct 6487 TGGAGATCATAGGGGAGGCTTTACGGTTCGCGGGGTTAACATAGTGGTAAAGGTCAGACA 6428 Query 63804 TCACTTCACTA-AATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCG 63862 ||| || | || | || || |||| ||||| ||||| || || || || | ||| Sbjct 6427 CCAC-CGACGACCATTGCTTCTTGGTTTGCTTGTGAAGATTAGAGACAGCAATACGGGCG 6369 Query 63863 GCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAGT-GGCTGCTATTTCGGCTGCC 63919 || || ||||||||||| ||||| |||| | || || ||| || ||||||| ||| Sbjct 6368 GCCAGGATGGCATAATCGGGATG-TGTGACGGTCATGTAGGCGGCAGTTTCGGCGGCC 6312 >seq101 Length=72697 Score = 129 bits (142), Expect = 7e-25 Identities = 375/572 (66%), Gaps = 18/572 (3%) Strand=Plus/Plus Query 32652 AACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAA 32711 |||| || || || || ||| ||| || ||||| || | | ||| | ||||| || Sbjct 40990 AACAGCAGGCAAGCAAAGTCGGTGTGCAGGCCCTCATCACGAGAAATAAGCTCGTTTGAG 41049 Query 32712 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCA 32771 || || || || ||||| || |||||||| ||||| || ||||| || || | || Sbjct 41050 AAGGTCAGACCAGGCATGAGACCACGCTTGCGCAGCCAGAAGATGGAGGCGAAGGCGCCT 41109 Query 32772 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAAC--CGGCGC 32829 || || || || || || || || |||||||||| || | || || ||| || | | Sbjct 41110 GAGAAAAAGATGCCCTCGACAGCAGCAAAGGCAACTAGGCGCTGGGCA-AACGTCGACTC 41168 Query 32830 --TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTC 32887 |||| |||||||| ||||||| |||||||| | || || || || || Sbjct 41169 CTTGTCGGTGATCCACTTCAGAGCCCAGTCGGCCTTGCGGCGGATGCAGGGAATAGTGTC 41228 Query 32888 TATAGCATTAAAGAGATAGtttttttCATTACTA----TCTTTAACATATGTATCAATCA 32943 || ||||| || || || | | | || | | || || | || || ||||||| Sbjct 41229 AATGGCATTGAACAGGTA----TGTGCGTTGCGAGGGCTCCTTGATGTAGGTGTCAATCA 41284 Query 32944 AAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATC 33003 || || |||| || || |||||||| || || || || ||||||||||| | Sbjct 41285 GCAGCGAGTAGGTTTCAGAGTGGATGTTTTCCATCATGATCTGGAAACCGTAGAAGCAGC 41344 Query 33004 TAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTC 33063 ||||||| ||||| || || | || || || | | |||||| || || || | Sbjct 41345 GGGCCTCGGGGATCTGCACCTCGCCTGAGAAGCGCTCAACGAGATTTTCGTTGACGATGC 41404 Query 33064 CGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT- 33122 | ||| ||| ||||| || || | | || || || || | |||||| |||| Sbjct 41405 CATCAGAGGCAGCAAAGAAGGCAAGAATGTGGGAGATGAAGTACTGCTCGTCT-TTGTTC 41463 Query 33123 ---AGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAAT 33179 | || ||||| || | || ||| ||||| | ||| | || || | ||||| || Sbjct 41464 AGACGGTTGTTCCAGTCGTGGAGATCCTTAGAGAGATCAATCTCCTCAGCAGTCCAGAAG 41523 Query 33180 GATGCCTCTGCCTTTTTATACATATTCCAGAT 33211 || ||||| ||||| || ||||| | |||||| Sbjct 41524 GAGGCCTCGGCCTTCTTGTACATCTGCCAGAT 41555 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633622392554800