Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20platani_20[genbank_20GCA_5F000978885.1_202015-04-23]
1,213 sequences; 29,181,415 total letters
Query= NC_008291.1
Length=198050
Score E
Sequences producing significant alignments: (Bits) Value
seq411 152 7e-32
seq101 129 7e-25
>seq411
Length=11963
Score = 152 bits (168), Expect = 7e-32
Identities = 509/778 (65%), Gaps = 23/778 (3%)
Strand=Plus/Minus
Query 63153 TAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTC 63212
|||| ||||||||| | | | ||||| |||||| || || | || ||||| | |||
Sbjct 7077 TAAG-TCGAGGAACTCGAAGACATCAGCATGCCATGGCTCGAGATAAATGGCAAAGGCTC 7019
Query 63213 CAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACA 63272
|||| || |||||||| ||||| || | || | |||||||| || |||| | | ||
Sbjct 7018 CAGGTCGCTTGTTTCCACCCTGGTCAACATAACGGGCGGTGTTGTTGAAAACACGTAGCA 6959
Query 63273 TTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAA 63332
| |||| || || || || ||||| || || || | || || ||| |||||||||
Sbjct 6958 TGGGAACGATGCCGTTCGAAGTACCGTTAGTGCCAGCAATGTAAGAGCCAGTGGCACGAA 6899
Query 63333 TA--TTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTT 63390
|| | |||| ||||| || || || ||||| || || || | || || ||
Sbjct 6898 TACGGTGAACATTG--AGACCGATACCACCAGCCATCTTGGAAATCATGGCACAAGTCTT 6841
Query 63391 TAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGA 63450
| ||||| || |||||||| || || |||||| |||||| | ||| ||||| |||
Sbjct 6840 GAGGGTATCGTAAATGCCCTCGATGCTGTCATCCTTCATGTCGACTAGGAAACATGAAGA 6781
Query 63451 CATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTT 63510
|| || | ||| || |||||||| | ||||| || |||||||| || | ||
Sbjct 6780 CAACTGAGCCTGGGGAGTACCGGCATTAAAGAGCGTAGGTGATGCGTGAGTGAAGAACTT 6721
Query 63511 TTCAGAAAGTAGATTGTACGTCTCAA-TAGCTGA--GTCTAT---ATCCCATTGATGAAT 63564
||| | || ||||| || |||| | || | || | | |||| |||
Sbjct 6720 GCTAGACATAAGGTTGTAGGTTTCAAGCACACGATCGACTTTGTCACCCCA------AAT 6667
Query 63565 TCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTT 63624
|| || || |||||||||| ||||||||| || | ||||| ||||| | | |||
Sbjct 6666 ACCCACAGCAACACGCATTATCATGTGCTGGGGACGCTCAACAATCTTACCATCAAGTTT 6607
Query 63625 CAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTC 63684
| | ||| || || | || ||||| ||||| || | ||| ||||| || ||
Sbjct 6606 GAGTAGGTACGAACGCTCGAGCGTCTTAAAGCCAAAGTACTGGTAGTTGAAGTCACGGTC 6547
Query 63685 GTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCAT-GGTAATAC 63743
||| | ||| | |||| || | |||||| | ||| | || ||| ||
Sbjct 6546 GTACACAATGGCAGAGTCCAGCTCATCCTTGTGACGCATAA-TGCACTCATATGTCTCTT 6488
Query 63744 TTGAAATAATAGGAAAATGTTTCCCATTTTTAGGATTGACATAGTTGAATAAATCCTCCA 63803
| || || ||||| | ||| | || || || ||||||| | | | || ||
Sbjct 6487 TGGAGATCATAGGGGAGGCTTTACGGTTCGCGGGGTTAACATAGTGGTAAAGGTCAGACA 6428
Query 63804 TCACTTCACTA-AATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCG 63862
||| || | || | || || |||| ||||| ||||| || || || || | |||
Sbjct 6427 CCAC-CGACGACCATTGCTTCTTGGTTTGCTTGTGAAGATTAGAGACAGCAATACGGGCG 6369
Query 63863 GCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAGT-GGCTGCTATTTCGGCTGCC 63919
|| || ||||||||||| ||||| |||| | || || ||| || ||||||| |||
Sbjct 6368 GCCAGGATGGCATAATCGGGATG-TGTGACGGTCATGTAGGCGGCAGTTTCGGCGGCC 6312
>seq101
Length=72697
Score = 129 bits (142), Expect = 7e-25
Identities = 375/572 (66%), Gaps = 18/572 (3%)
Strand=Plus/Plus
Query 32652 AACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAA 32711
|||| || || || || ||| ||| || ||||| || | | ||| | ||||| ||
Sbjct 40990 AACAGCAGGCAAGCAAAGTCGGTGTGCAGGCCCTCATCACGAGAAATAAGCTCGTTTGAG 41049
Query 32712 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCA 32771
|| || || || ||||| || |||||||| ||||| || ||||| || || | ||
Sbjct 41050 AAGGTCAGACCAGGCATGAGACCACGCTTGCGCAGCCAGAAGATGGAGGCGAAGGCGCCT 41109
Query 32772 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAAC--CGGCGC 32829
|| || || || || || || || |||||||||| || | || || ||| || | |
Sbjct 41110 GAGAAAAAGATGCCCTCGACAGCAGCAAAGGCAACTAGGCGCTGGGCA-AACGTCGACTC 41168
Query 32830 --TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTC 32887
|||| |||||||| ||||||| |||||||| | || || || || ||
Sbjct 41169 CTTGTCGGTGATCCACTTCAGAGCCCAGTCGGCCTTGCGGCGGATGCAGGGAATAGTGTC 41228
Query 32888 TATAGCATTAAAGAGATAGtttttttCATTACTA----TCTTTAACATATGTATCAATCA 32943
|| ||||| || || || | | | || | | || || | || || |||||||
Sbjct 41229 AATGGCATTGAACAGGTA----TGTGCGTTGCGAGGGCTCCTTGATGTAGGTGTCAATCA 41284
Query 32944 AAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATC 33003
|| || |||| || || |||||||| || || || || ||||||||||| |
Sbjct 41285 GCAGCGAGTAGGTTTCAGAGTGGATGTTTTCCATCATGATCTGGAAACCGTAGAAGCAGC 41344
Query 33004 TAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTC 33063
||||||| ||||| || || | || || || | | |||||| || || || |
Sbjct 41345 GGGCCTCGGGGATCTGCACCTCGCCTGAGAAGCGCTCAACGAGATTTTCGTTGACGATGC 41404
Query 33064 CGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT- 33122
| ||| ||| ||||| || || | | || || || || | |||||| ||||
Sbjct 41405 CATCAGAGGCAGCAAAGAAGGCAAGAATGTGGGAGATGAAGTACTGCTCGTCT-TTGTTC 41463
Query 33123 ---AGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAAT 33179
| || ||||| || | || ||| ||||| | ||| | || || | ||||| ||
Sbjct 41464 AGACGGTTGTTCCAGTCGTGGAGATCCTTAGAGAGATCAATCTCCTCAGCAGTCCAGAAG 41523
Query 33180 GATGCCTCTGCCTTTTTATACATATTCCAGAT 33211
|| ||||| ||||| || ||||| | ||||||
Sbjct 41524 GAGGCCTCGGCCTTCTTGTACATCTGCCAGAT 41555
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 633622392554800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |