Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20platani_20[genbank_20GCA_5F000978885.1_202015-04-23]
1,213 sequences; 29,181,415 total letters
Query= NC_008518.1
Length=174059
Score E
Sequences producing significant alignments: (Bits) Value
seq101 165 9e-36
>seq101
Length=72697
Score = 165 bits (182), Expect = 9e-36
Identities = 477/726 (66%), Gaps = 11/726 (2%)
Strand=Plus/Plus
Query 92927 TCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAGACGTACA 92986
||||| ||||| || |||||||| ||||| ||| ||||||||||| ||||
Sbjct 40834 TCAGCAACAAACTCAATGTACTGCTTCATCAGATCGGCGTTCATTCCTAGCAGACCGCAG 40893
Query 92987 GGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGATTTCTATT 93046
|| ||||| ||||||| ||| || |||||||| || ||||| || | | ||| || ||
Sbjct 40894 GGCAGAGCCTCGGTCAGGAACTCCTTCTCGATCACGACGGCATCAGTGATGAT--CTTTT 40951
Query 93047 ACTCTAC-TATTTGGTGGTTT--TTGTACGACATAATTGTACATTAAGCACGCAAAGTCG 93103
| | | | ||| ||| |||| | | || | ||| | ||| |||||||||
Sbjct 40952 GCACAAGGTCCTTGCTGGGGCGGTTGTTC-AGATGCGAGAACAGCAGGCAAGCAAAGTCG 41010
Query 93104 GTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAACAGT 93163
|| || | || || || || || || | ||| || ||| || | ||| || | ||
Sbjct 41011 GTGTGCAGGCCCTCATCACGAGAAATAAGCTCGTTTGAGAAGGTCAGACCAGGCATGAGA 41070
Query 93164 CCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACG 93223
|| || || ||||| || || || || || || || ||||| || || || ||
Sbjct 41071 CCACGCTTGCGCAGCCAGAAGATGGAGGCGAAGGCGCCTGAGAAAAAGATGCCCTCGACA 41130
Query 93224 GCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATTTTAAA 93283
|| ||||| || || | || | |||||| | | || | ||||||| || | |
Sbjct 41131 GCAGCAAAGGCAACTAGGCGCTGGGCAAACGTCGACTCCTTGTCGGTGATCCACTTCAGA 41190
Query 93284 GCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAATCT 93343
||||| ||||| || || || || | || || || || || || |||||
Sbjct 41191 GCCCAGTCGGCCTTGCGGCGGATGCAGGGAATAGTGTCAATGGCATTGAACAGGTATGTG 41250
Query 93344 CGCT-CGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGAC 93402
|| | || | || | ||||| || || || | ||| || || ||||||| ||||
Sbjct 41251 CGTTGCGAGGGCTCCTTG-ATGTAGGTGTCAATCAGCAGCGAGTAGGTTTCAGAGTGGAT 41309
Query 93403 ATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTG 93462
|| ||||| || ||||| |||||||| || | || || | ||||||||| ||
Sbjct 41310 GTTTTCCATCATGATCTGGAAACCGTAGAAGCAGCGGGCCTCGGGGATCTGCACCTCGCC 41369
Query 93463 AGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAA 93522
|| || | ||| ||||||||||| ||||| || ||||| || || ||||| || || |
Sbjct 41370 TGAGAAGCGCTCAACGAGATTTTCGTTGACGATGCCATCAGAGGCAGCAAAGAAGGCAAG 41429
Query 93523 TATATGCTTTATAAAATGTTTCTCATCATCTTT---AAGCTTATCCCAATCGGATAGATC 93579
|| || || || | | ||| || | || | | || | ||| ||| |||||
Sbjct 41430 AATGTGGGAGATGAAGTACTGCTCGTCTTTGTTCAGACGGTTGTTCCAGTCGTGGAGATC 41489
Query 93580 TTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATC 93639
|| || ||||| | || || ||||||| || || || || || || |||||||| |
Sbjct 41490 CTTAGAGAGATCAATCTCCTCAGCAGTCCAGAAGGAGGCCTCGGCCTTCTTGTACATCTG 41549
Query 93640 CCATAT 93645
||| ||
Sbjct 41550 CCAGAT 41555
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 556852356598120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |