Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20platani_20[genbank_20GCA_5F000978885.1_202015-04-23] 1,213 sequences; 29,181,415 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq101 109 1e-18 seq411 100 6e-16 seq311 100 6e-16 >seq101 Length=72697 Score = 109 bits (120), Expect = 1e-18 Identities = 286/434 (66%), Gaps = 8/434 (2%) Strand=Plus/Plus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 || ||||| |||| |||||| | || ||||| ||||||||||||||| ||||||||| Sbjct 40732 TCAAAGAAGTTAGTCTTGCCGCCGAGCGAGATGTTCTCCATGAAGTCGAATGGGTTTGTG 40791 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 ||| |||| ||| | ||| || || || | | |||||| || |||||||| | Sbjct 40792 GCACGGTACACCTTCTCGTTGCCTAGAGCAACAAGTAGGCGGTCAGCAACAAACTCAATG 40851 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATG 251742 ||||| |||||| || | |||||| || | || || || || | ||||| | | Sbjct 40852 TACTGCTTCATCAGATCGGCGTTCATTCCTAGCAGACCGCAGGGCAGAGCCTCGGTCAGG 40911 Query 251743 AATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTG----TGCCAGAGA 251798 || ||||| ||| | | || || || | || | ||| | | | | | Sbjct 40912 AACTCCTTCTCGATCACGACGGCATCAGTGATGATCTTTTGCACAAGGTCCTTGCTGGGG 40971 Query 251799 CAGCTTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTCGTC 251858 | | ||||| ||| | ||| |||| || |||| | |||||| ||||| || Sbjct 40972 C-GGTTGTT---CAGATGCGAGAACAGCAGGCAAGCAAAGTCGGTGTGCAGGCCCTCATC 41027 Query 251859 GCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCA 251918 ||| || | |||||| || | ||| |||||||| | ||||| || | ||||| Sbjct 41028 ACGAGAAATAAGCTCGTTTGAGAAGGTCAGACCAGGCATGAGACCACGCTTGCGCAGCCA 41087 Query 251919 GAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAACAAG 251978 |||||| | | |||| || ||||| | | ||||||||| | | ||||| || Sbjct 41088 GAAGATGGAGGCGAAGGCGCCTGAGAAAAAGATGCCCTCGACAGCAGCAAAGGCAACTAG 41147 Query 251979 GCGCTCAGCAAACG 251992 ||||| ||||||| Sbjct 41148 GCGCTGGGCAAACG 41161 >seq411 Length=11963 Score = 100 bits (110), Expect = 6e-16 Identities = 183/268 (68%), Gaps = 0/268 (0%) Strand=Plus/Minus Query 293115 CTGCGTCTGATCGACAAAGGCACCACGATCAGCAGCGAGGTCAATCACTGTCTTCATAGA 293174 ||||| || || | || ||||||||||||||||| | | | ||||| | || Sbjct 8256 CTGCGATTGGTCAATGAAAGCACCACGATCAGCAGCCATTTGCACAACTGTACGCTGGGA 8197 Query 293175 GATCTCCCACGATGTCTTGTACACTGCCTTGACATCAGGATGAATGCCAATAACCTTCTG 293234 |||||||| |||||||||| || || | ||||| | |||||| | | ||||| Sbjct 8196 AATCTCCCAAACGGTCTTGTACAGAGCTTTAATATCAGCAGGAATGCTAGAGATGTTCTG 8137 Query 293235 GATAGACCCTCCGTTGGCAATAATCTGGTTCTTCATTGTCTCGGACCAAGTCCCACGAGC 293294 ||| || || || |||||||| | |||||||| | || ||||| ||| || | Sbjct 8136 GATGGAGCCATTGTCCGCAATAATGCGATTCTTCATGTTGTCAGACCATAAACCAAGATC 8077 Query 293295 AATGAGCTCGCGGACAAGGTAAGAGTTGACAACGGGGAACTCACCAGCGAGAGTGCGACG 293354 | || || || | ||| | | |||||| || ||||||| ||||| ||| ||| || Sbjct 8076 GACTAGGTCACGTAGAAGCCAGGGGTTGACGACCTGGAACTCGCCAGCAAGAACGCGGCG 8017 Query 293355 GCTGTAAATGTTCGAAGTGATGGGTTCG 293382 ||||||||| || ||| |||||| Sbjct 8016 CTGGTAAATGTTGGATGTGTACGGTTCG 7989 >seq311 Length=88599 Score = 100 bits (110), Expect = 6e-16 Identities = 174/248 (70%), Gaps = 4/248 (2%) Strand=Plus/Plus Query 279320 CGAAGCAGAGAAGGA-GACTGAGCCAGGTGAGGATCTGTGTGACTGTGATTTCTCGCTCG 279378 ||| | |||| |||| ||| ||| |||||||||||||| |||| |||||| || | Sbjct 82394 CGATGAAGAGGAGGATGAC-GAGGAGGGTGAGGATCTGTGCAACTGCACTTTCTCCCTTG 82452 Query 279379 CATATGGTGGGAAGATTCTGCTAAACTCTACCCGCCTCAACATCAAGCGTGGCAACCGGT 279438 | || |||| ||||| ||||| ||| || | ||| | |||||||| | || | Sbjct 82453 CCTACGGTGCCAAGATCCTGCTTAACCAGACTCACCTGCGTCTGAAGCGTGGTCAGCGCT 82512 Query 279439 ATGGTCTCATCGGTCCCAATGGAGCGGGTAAGAGCACTCTAATGCGCGCCATTGCAAACG 279498 | ||||| |||||||||||| | || ||| || || ||||| ||||| |||| Sbjct 82513 ACGGTCTGTGCGGTCCCAATGGTTCCGGAAAGTCTACCCTGATGCGTGCCATCAACAACG 82572 Query 279499 GTCAGCTGGAAGGATTTCCTAACGCA-TCTGAGGTAAGGACAGTGTATGTAGAGCACGAC 279557 ||| | || || || || || ||| || ||||| | ||| || | || ||||||||| Sbjct 82573 AACAGGTCGAGGGCTTCCCCAA-GCAGTCCGAGGTCAAGACTGTCTTCGTCGAGCACGAC 82631 Query 279558 ATCGACTC 279565 | ||||| Sbjct 82632 CTGGACTC 82639 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027820825810133