Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20platani_20[genbank_20GCA_5F000978885.1_202015-04-23]
1,213 sequences; 29,181,415 total letters
Query= NC_008724.1
Length=288047
Score E
Sequences producing significant alignments: (Bits) Value
seq338 158 2e-33
seq64 154 3e-32
seq311 150 3e-31
seq145 136 7e-27
seq101 134 3e-26
>seq338
Length=64627
Score = 158 bits (174), Expect = 2e-33
Identities = 164/215 (76%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || || |||| |||||||| || || || ||||| || ||||| || ||||||
Sbjct 52469 CCACCACGCAGACGCAGGACCAAGTGAAGAGTAGATTCTTTCTGAATGTTGTAGTCGGAG 52528
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | ||||| || | |||||| |||||||| ||||| | || ||||| || ||
Sbjct 52529 AGGGTGCGGCCATCCTCAAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAGGG 52588
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|| || |||||||| || ||||| | ||||||| || |||||||| | || || |||
Sbjct 52589 ATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTGTCGGAGGACTCGACT 52648
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGAC 68449
|| | ||| ||||| ||||| || |||||||||||
Sbjct 52649 TCGAGGGTAATGGTCTTTCCGGTAAGGGTCTTGAC 52683
Score = 156 bits (172), Expect = 8e-33
Identities = 176/236 (75%), Gaps = 0/236 (0%)
Strand=Plus/Plus
Query 68226 TTTTAATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTA 68285
||||| | || || || || |||| |||||||| || || ||||| || ||||||||
Sbjct 52004 TTTTACTGGCCACCACGCAGACGCAGAACCAAGTGAAGAGTAGACTCCTTCTGGATGTTG 52063
Query 68286 TAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGG 68345
|| |||||||| || | ||||| || | |||||| |||||||| ||||| | || ||
Sbjct 52064 TAGTCGGAGAGGGTGCGGCCATCCTCAAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGA 52123
Query 68346 TCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT 68405
|| || || || || |||||||| || ||||| | ||||| || ||||| || |
Sbjct 52124 TCCGGAGGGATACCCTCCTTGTCCTGGATCTTGGATTTGACATTGTCAATGGTATCAGAG 52183
Query 68406 GATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| || ||||| | ||| ||||| || ||||| | |||||||||||| || |||||
Sbjct 52184 GACTCGACTTCGAGGGTAATGGTCTTGCCCGTCAAGGTCTTGACGAAGATTTGCAT 52239
Score = 131 bits (144), Expect = 3e-25
Identities = 165/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || || |||| |||||||| || || || ||||| || ||||| || || ||
Sbjct 52241 CCACCACGCAGACGCAGAACCAAGTGAAGAGTAGATTCTTTCTGAATGTTGTAGTCCGAA 52300
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | ||||| || | |||||| || || || ||||| | || || || || ||
Sbjct 52301 AGGGTACGGCCATCCTCGAGCTGCTTTCCAGCAAAAATGAGACGCTGCTGATCCGGGGGG 52360
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|| || ||||| || || ||||| | |||||| || ||||| || | || || |||
Sbjct 52361 ATACCCTCCTTATCCTGGATCTTGGACTTGACATTGTCAATGGTATCAGAGGACTCGACT 52420
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| | ||| ||||| || ||||| | |||||||||||| || |||||
Sbjct 52421 TCGAGGGTAATGGTCTTGCCCGTCAAGGTCTTGACGAAGATTTGCAT 52467
>seq64
Length=146407
Score = 154 bits (170), Expect = 3e-32
Identities = 165/218 (76%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || ||||||| || | ||| || |||||||| || |||||||| || |||||
Sbjct 70964 CCACCACGCAGGCGCAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 70905
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | ||||| || | |||||| || || || || | | || ||||| || |||
Sbjct 70904 AGAGTGCGGCCATCCTCAAGCTGCTTACCAGCAAAGATCAAGCGCTGCTGGTCCGGGGGA 70845
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
||||| |||||||| || ||||| | ||||||| ||||| ||||| | || || ||
Sbjct 70844 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATCGTGTCCGAAGACTCGACC 70785
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAA 68452
|||| ||| ||||| || ||||| ||||||||||||||
Sbjct 70784 TCCAGGGTAATGGTCTTACCCGTCAGGGTCTTGACGAA 70747
>seq311
Length=88599
Score = 150 bits (166), Expect = 3e-31
Identities = 671/1045 (64%), Gaps = 56/1045 (5%)
Strand=Plus/Minus
Query 224981 CGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAAGCA 225040
||||| |||||||||| | || ||| |||||| ||||| ||||| ||| |||||
Sbjct 83428 CGCCATTGGATGTACTCGGAAGGAGTCTTGTCCAAGTGGTGGTCAATGTGGGCAAAAGCG 83369
Query 225041 TGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACAGAGCCCCGAGTCGGT 225100
||||| | ||| || || || ||||| |||| | | || ||| ||
Sbjct 83368 TGCTGCTTGATGTAGGCGATACGGATGTTCTCGTGCTGGTAGATCTCACCAATAGTGGGA 83309
Query 225101 TGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGGCCAATC 225160
||| || || ||||| ||||| || || | ||| || ||||||||||| || ||
Sbjct 83308 ACAAGCTCACCAGTCAGGACATTGATCAGAGTCGACTTACCGGCACCATTGGGACCGATG 83249
Query 225161 ACGCCAATCCGGGATGACATTGCAACCTGCGAGTTCACGTTGCTGAAGATCTCAGGGCCA 225220
||| |||| ||||| |||| | ||| | | | || | ||| |||| ||||
Sbjct 83248 ACGGCAATACGGGACGACAGAGAGCACTGGAAAGTGATGTCG--GAA-ATCTG-GGGC-- 83195
Query 225221 GTTTGGTAAGCAAAGGCCACGCCACG--CAGCTTCATG---------ATGGCACGGTCCT 225269
|||||| ||| || | | || ||| || ||||| | |||
Sbjct 83194 --TTGGTAGTACCAGGGTACTGGAAGGTCATCTTGGTGGCACGAAGAATGGCCTTGGCCT 83137
Query 225270 TGGAAGTAATACCCTCCAGGAACCCGGGCTCGGGGAACTCCCACTTGGTCACCGCGTCCT 225329
||| | | |||||| ||||| |||||||||||||| ||| | || | | | |
Sbjct 83136 TGGTCTTCACACCCTCAAGGAAACCGGGCTCGGGGAAGGTGAACTCGATCTCGGAGGCAC 83077
Query 225330 TCAGGTCGTAGTAAGATGCAGCCTCGGGTCGCTTTGCCACGAAAGCAGACAGGTTTCCGA 225389
|| |||||||| || ||| ||| | ||| || || | | |||||| ||
Sbjct 83076 CAAGTTCGTAGTATGACTTGGCCGAGGGGCACTTCTTGACAAACTCGGCCAGGTTACCAC 83017
Query 225390 GGTGCTTCGTGAGCTTGAGGTTCTTCTCGTAATGAACAAT-TGCCGAGCACACTGCGTCA 225448
||| | | ||||||| | || |||| || ||||| ||| | ||| || ||||
Sbjct 83016 GGTAACGCTTAAGCTTGAAGCGCT---CGTAGTGGACAATGTGCTG-GCAGACGTTGTCA 82961
Query 225449 AGGAAGCCAGAGTCGTGGGACACAATGATGGACGA-CACGTTCGTCAG--GCCCTTGAGG 225505
||||||||||||||||| || || || ||||| | || | | || || | |||
Sbjct 82960 AGGAAGCCAGAGTCGTGAGAGACGATAATGGAAGTGCAAG---GAGAGTTGCAC---AGG 82907
Query 225506 TGCGTGATG-AGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAAG 225564
| || | ||||| ||||| | || |||| ||||| ||||| ||||| |||||
Sbjct 82906 TA-GTCCTCCAGCCACTTGACGTTCTTCACATCCAGATGGTTGGTAGGCTCGTCAAGAAG 82848
Query 225565 CAGGATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCCC 225624
|||||| |||| | | || | ||| || |||| ||||||||| ||||| || ||
Sbjct 82847 CAGGATATCAGGAGCCTCGAAAACGGCACGGCACAGAGCCAGCTTCATCTTCCAACCACC 82788
Query 225625 GGACAGGGAGCCGATTGAAACAG-AGTGCTTAGCTTCGTCAAAGCCGTACTCCAGGAGCG 225683
|| || | | ||| | ||| | | || ||| || || |||| |||| |||
Sbjct 82787 AGAAAGAGCGGAGATCTCACCAGTAATCATTTGCTCGGTGAA-GCCGAACTCGGTCAGCT 82729
Query 225684 TCTGGATAATGCGCTCGGGAGAGCTGCGAGCGGCAACGTTGGGGTCGGACGAGAGGTAAT 225743
|| ||| | | ||| | | | || | ||||||| ||||| | || | |
Sbjct 82728 GCTTGATGACGTCCTCCTTGGTGGT---AGTG---ACGTTGGCGTCGGCC-AGCT-TCTT 82677
Query 225744 CATATAC-----------GGTCATGTCCGAGACAGACGCGTCAATGTCGTGGTCCACGTA 225792
|||| | |||||| || | | ||| | ||| | |||||| || ||| |
Sbjct 82676 CATAGTCCATTCAATGGTGGTCATCTCAGTGTCAGCAGAGTCCAGGTCGTGCTCGACGAA 82617
Query 225793 CACCGTCCGGAGCTGAGAAGCATCGGGGAAGCCCTCCAGCTGGCCATTTGCAATCGCACG 225852
|| ||| || || || | |||||||||||| | ||| | || || |||||
Sbjct 82616 GACAGTCTTGACCTCGGACTGCTTGGGGAAGCCCTCGACCTGTTCGTTGTTGATGGCACG 82557
Query 225853 GAGCAGGGTACTCTTGCCCGCGCCGTTGGGACCGATGAGGCCGTAATGATTCCCGCGCTT 225912
| ||||||| ||| || | || ||||||||| || ||||| | | || |||||
Sbjct 82556 CATCAGGGTAGACTTTCCGGAACCATTGGGACCGCACAGACCGTAGCGCTGACCACGCTT 82497
Query 225913 GATGTTGAGGCGCGTGGAGTTCAGGAGGATCTTGCCACCATAGGCAAGGGAGAACTCGCA 225972
| ||| | || ||| || ||||||||| |||| |||||||||||||| |||
Sbjct 82496 CAGACGCAGGTGAGTCTGGTTAAGCAGGATCTTGGCACCGTAGGCAAGGGAGAAAGTGCA 82437
Query 225973 ATCGCACAGGTCCTCACCCTCCTCG 225997
| |||||| |||||||||||||||
Sbjct 82436 GTTGCACAGATCCTCACCCTCCTCG 82412
>seq145
Length=91869
Score = 136 bits (150), Expect = 7e-27
Identities = 143/188 (76%), Gaps = 0/188 (0%)
Strand=Plus/Plus
Query 68274 TTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATG 68333
|| || ||||| || || || || || | ||||| || | |||||| || ||||| ||
Sbjct 6022 TTCTGAATGTTGTAGTCAGACAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATC 6081
Query 68334 AGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCG 68393
|| | || ||||| || |||||||| |||||||| |||||||| | |||||| |||
Sbjct 6082 AGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCG 6141
Query 68394 ATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAAT 68453
|||||||| | || || || || | ||| || || || ||||| ||||||||||||||
Sbjct 6142 ATGGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTAAGGGTCTTGACGAAA 6201
Query 68454 ATCTGCAT 68461
||||||||
Sbjct 6202 ATCTGCAT 6209
>seq101
Length=72697
Score = 134 bits (148), Expect = 3e-26
Identities = 308/459 (67%), Gaps = 10/459 (2%)
Strand=Plus/Plus
Query 9939 ACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTCGAGG 9998
|| || ||||||||||| || || || ||| |||||||| | |||||| ||||
Sbjct 40699 ACACCAGCCTTCTGGTAGTCGCCGACACGCTTCTCAAAGAAGTTAGTCTTGCCGCCGAGC 40758
Query 9999 GAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCCAAACTGCTTGGGGTAACCGAGT 10058
|| ||| |||||||||||| || ||||| ||| | || ||| || || ||
Sbjct 40759 GAGATGTTCTCCATGAAGTCGAATGGGTTTGTGGCACGGTACACCTTCTCGTTGCCTAGA 40818
Query 10059 GCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGAGTTCATG 10118
|| | | ||||||||| || ||||| |||||||| ||||||| || | ||||||
Sbjct 40819 GCAACAAGTAGGCGGTCAGCAACAAACTCAATGTACTGCTTCATCAGATCGGCGTTCATT 40878
Query 10119 CCAATCATGCGGCAGGGGATGGCGTCGCAAATGAAGTCCTTTTCGTTGGCGACCGCTTCC 10178
|| | || | |||||| | || ||| | ||| ||||| ||| | |||| || ||
Sbjct 40879 CCTAGCAGACCGCAGGGCAGAGCCTCGGTCAGGAACTCCTTCTCGATCACGACGGCATCA 40938
Query 10179 TCGACGATGCTCTTTACCACGTC----AAGGGACAGCTTGTTCTCGAGCTTCGAATACAG 10234
|| ||| | | || | ||| ||| | | |||||| || | ||| ||||
Sbjct 40939 GTGATGATCTTTTGCACAAGGTCCTTGCTGGGGC-GGTTGTTC---AGATGCGAGAACAG 40994
Query 10235 GAGCTCTCCAAACTGCTGGTGGAGGCCCTCGTCGCGGCTGATGAACTCGTTGGACAAACC 10294
|| |||| | ||| |||||||| || || || | |||||| || ||
Sbjct 40995 CAGGCAAGCAAAGTCGGTGTGCAGGCCCTCATCACGAGAAATAAGCTCGTTTGAGAAGGT 41054
Query 10295 CAGACCGGGCATGAGCCCCCGGTTGCGCAGCCAGAAAATGGCGCAGAACGACCCGGAGAA 10354
|||||| |||||||| || || |||||||||||||| |||| | ||| | || |||||
Sbjct 41055 CAGACCAGGCATGAGACCACGCTTGCGCAGCCAGAAGATGGAGGCGAAGGCGCCTGAGAA 41114
Query 10355 CAGAAGACCCTCCAC-GCACACCCAGGCGACGAGGCGCT 10392
| | ||||| || ||| | |||| || |||||||
Sbjct 41115 AAAGATGCCCTCGACAGCA-GCAAAGGCAACTAGGCGCT 41152
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 921608425900360
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