Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20platani_20[genbank_20GCA_5F000978885.1_202015-04-23] 1,213 sequences; 29,181,415 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq338 158 2e-33 seq64 154 3e-32 seq311 150 3e-31 seq145 136 7e-27 seq101 134 3e-26 >seq338 Length=64627 Score = 158 bits (174), Expect = 2e-33 Identities = 164/215 (76%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || |||| |||||||| || || || ||||| || ||||| || |||||| Sbjct 52469 CCACCACGCAGACGCAGGACCAAGTGAAGAGTAGATTCTTTCTGAATGTTGTAGTCGGAG 52528 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| |||||||| ||||| | || ||||| || || Sbjct 52529 AGGGTGCGGCCATCCTCAAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAGGG 52588 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| || ||||| | ||||||| || |||||||| | || || ||| Sbjct 52589 ATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTGTCGGAGGACTCGACT 52648 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGAC 68449 || | ||| ||||| ||||| || ||||||||||| Sbjct 52649 TCGAGGGTAATGGTCTTTCCGGTAAGGGTCTTGAC 52683 Score = 156 bits (172), Expect = 8e-33 Identities = 176/236 (75%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 68226 TTTTAATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTA 68285 ||||| | || || || || |||| |||||||| || || ||||| || |||||||| Sbjct 52004 TTTTACTGGCCACCACGCAGACGCAGAACCAAGTGAAGAGTAGACTCCTTCTGGATGTTG 52063 Query 68286 TAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGG 68345 || |||||||| || | ||||| || | |||||| |||||||| ||||| | || || Sbjct 52064 TAGTCGGAGAGGGTGCGGCCATCCTCAAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGA 52123 Query 68346 TCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT 68405 || || || || || |||||||| || ||||| | ||||| || ||||| || | Sbjct 52124 TCCGGAGGGATACCCTCCTTGTCCTGGATCTTGGATTTGACATTGTCAATGGTATCAGAG 52183 Query 68406 GATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || ||||| | ||| ||||| || ||||| | |||||||||||| || ||||| Sbjct 52184 GACTCGACTTCGAGGGTAATGGTCTTGCCCGTCAAGGTCTTGACGAAGATTTGCAT 52239 Score = 131 bits (144), Expect = 3e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || |||| |||||||| || || || ||||| || ||||| || || || Sbjct 52241 CCACCACGCAGACGCAGAACCAAGTGAAGAGTAGATTCTTTCTGAATGTTGTAGTCCGAA 52300 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| || || || ||||| | || || || || || Sbjct 52301 AGGGTACGGCCATCCTCGAGCTGCTTTCCAGCAAAAATGAGACGCTGCTGATCCGGGGGG 52360 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || ||||| || || ||||| | |||||| || ||||| || | || || ||| Sbjct 52361 ATACCCTCCTTATCCTGGATCTTGGACTTGACATTGTCAATGGTATCAGAGGACTCGACT 52420 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||| ||||| || ||||| | |||||||||||| || ||||| Sbjct 52421 TCGAGGGTAATGGTCTTGCCCGTCAAGGTCTTGACGAAGATTTGCAT 52467 >seq64 Length=146407 Score = 154 bits (170), Expect = 3e-32 Identities = 165/218 (76%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||||| || | ||| || |||||||| || |||||||| || ||||| Sbjct 70964 CCACCACGCAGGCGCAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 70905 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| || || || || | | || ||||| || ||| Sbjct 70904 AGAGTGCGGCCATCCTCAAGCTGCTTACCAGCAAAGATCAAGCGCTGCTGGTCCGGGGGA 70845 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| || ||||| | ||||||| ||||| ||||| | || || || Sbjct 70844 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATCGTGTCCGAAGACTCGACC 70785 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAA 68452 |||| ||| ||||| || ||||| |||||||||||||| Sbjct 70784 TCCAGGGTAATGGTCTTACCCGTCAGGGTCTTGACGAA 70747 >seq311 Length=88599 Score = 150 bits (166), Expect = 3e-31 Identities = 671/1045 (64%), Gaps = 56/1045 (5%) Strand=Plus/Minus Query 224981 CGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAAGCA 225040 ||||| |||||||||| | || ||| |||||| ||||| ||||| ||| ||||| Sbjct 83428 CGCCATTGGATGTACTCGGAAGGAGTCTTGTCCAAGTGGTGGTCAATGTGGGCAAAAGCG 83369 Query 225041 TGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACAGAGCCCCGAGTCGGT 225100 ||||| | ||| || || || ||||| |||| | | || ||| || Sbjct 83368 TGCTGCTTGATGTAGGCGATACGGATGTTCTCGTGCTGGTAGATCTCACCAATAGTGGGA 83309 Query 225101 TGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGGCCAATC 225160 ||| || || ||||| ||||| || || | ||| || ||||||||||| || || Sbjct 83308 ACAAGCTCACCAGTCAGGACATTGATCAGAGTCGACTTACCGGCACCATTGGGACCGATG 83249 Query 225161 ACGCCAATCCGGGATGACATTGCAACCTGCGAGTTCACGTTGCTGAAGATCTCAGGGCCA 225220 ||| |||| ||||| |||| | ||| | | | || | ||| |||| |||| Sbjct 83248 ACGGCAATACGGGACGACAGAGAGCACTGGAAAGTGATGTCG--GAA-ATCTG-GGGC-- 83195 Query 225221 GTTTGGTAAGCAAAGGCCACGCCACG--CAGCTTCATG---------ATGGCACGGTCCT 225269 |||||| ||| || | | || ||| || ||||| | ||| Sbjct 83194 --TTGGTAGTACCAGGGTACTGGAAGGTCATCTTGGTGGCACGAAGAATGGCCTTGGCCT 83137 Query 225270 TGGAAGTAATACCCTCCAGGAACCCGGGCTCGGGGAACTCCCACTTGGTCACCGCGTCCT 225329 ||| | | |||||| ||||| |||||||||||||| ||| | || | | | | Sbjct 83136 TGGTCTTCACACCCTCAAGGAAACCGGGCTCGGGGAAGGTGAACTCGATCTCGGAGGCAC 83077 Query 225330 TCAGGTCGTAGTAAGATGCAGCCTCGGGTCGCTTTGCCACGAAAGCAGACAGGTTTCCGA 225389 || |||||||| || ||| ||| | ||| || || | | |||||| || Sbjct 83076 CAAGTTCGTAGTATGACTTGGCCGAGGGGCACTTCTTGACAAACTCGGCCAGGTTACCAC 83017 Query 225390 GGTGCTTCGTGAGCTTGAGGTTCTTCTCGTAATGAACAAT-TGCCGAGCACACTGCGTCA 225448 ||| | | ||||||| | || |||| || ||||| ||| | ||| || |||| Sbjct 83016 GGTAACGCTTAAGCTTGAAGCGCT---CGTAGTGGACAATGTGCTG-GCAGACGTTGTCA 82961 Query 225449 AGGAAGCCAGAGTCGTGGGACACAATGATGGACGA-CACGTTCGTCAG--GCCCTTGAGG 225505 ||||||||||||||||| || || || ||||| | || | | || || | ||| Sbjct 82960 AGGAAGCCAGAGTCGTGAGAGACGATAATGGAAGTGCAAG---GAGAGTTGCAC---AGG 82907 Query 225506 TGCGTGATG-AGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAAG 225564 | || | ||||| ||||| | || |||| ||||| ||||| ||||| ||||| Sbjct 82906 TA-GTCCTCCAGCCACTTGACGTTCTTCACATCCAGATGGTTGGTAGGCTCGTCAAGAAG 82848 Query 225565 CAGGATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCCC 225624 |||||| |||| | | || | ||| || |||| ||||||||| ||||| || || Sbjct 82847 CAGGATATCAGGAGCCTCGAAAACGGCACGGCACAGAGCCAGCTTCATCTTCCAACCACC 82788 Query 225625 GGACAGGGAGCCGATTGAAACAG-AGTGCTTAGCTTCGTCAAAGCCGTACTCCAGGAGCG 225683 || || | | ||| | ||| | | || ||| || || |||| |||| ||| Sbjct 82787 AGAAAGAGCGGAGATCTCACCAGTAATCATTTGCTCGGTGAA-GCCGAACTCGGTCAGCT 82729 Query 225684 TCTGGATAATGCGCTCGGGAGAGCTGCGAGCGGCAACGTTGGGGTCGGACGAGAGGTAAT 225743 || ||| | | ||| | | | || | ||||||| ||||| | || | | Sbjct 82728 GCTTGATGACGTCCTCCTTGGTGGT---AGTG---ACGTTGGCGTCGGCC-AGCT-TCTT 82677 Query 225744 CATATAC-----------GGTCATGTCCGAGACAGACGCGTCAATGTCGTGGTCCACGTA 225792 |||| | |||||| || | | ||| | ||| | |||||| || ||| | Sbjct 82676 CATAGTCCATTCAATGGTGGTCATCTCAGTGTCAGCAGAGTCCAGGTCGTGCTCGACGAA 82617 Query 225793 CACCGTCCGGAGCTGAGAAGCATCGGGGAAGCCCTCCAGCTGGCCATTTGCAATCGCACG 225852 || ||| || || || | |||||||||||| | ||| | || || ||||| Sbjct 82616 GACAGTCTTGACCTCGGACTGCTTGGGGAAGCCCTCGACCTGTTCGTTGTTGATGGCACG 82557 Query 225853 GAGCAGGGTACTCTTGCCCGCGCCGTTGGGACCGATGAGGCCGTAATGATTCCCGCGCTT 225912 | ||||||| ||| || | || ||||||||| || ||||| | | || ||||| Sbjct 82556 CATCAGGGTAGACTTTCCGGAACCATTGGGACCGCACAGACCGTAGCGCTGACCACGCTT 82497 Query 225913 GATGTTGAGGCGCGTGGAGTTCAGGAGGATCTTGCCACCATAGGCAAGGGAGAACTCGCA 225972 | ||| | || ||| || ||||||||| |||| |||||||||||||| ||| Sbjct 82496 CAGACGCAGGTGAGTCTGGTTAAGCAGGATCTTGGCACCGTAGGCAAGGGAGAAAGTGCA 82437 Query 225973 ATCGCACAGGTCCTCACCCTCCTCG 225997 | |||||| ||||||||||||||| Sbjct 82436 GTTGCACAGATCCTCACCCTCCTCG 82412 >seq145 Length=91869 Score = 136 bits (150), Expect = 7e-27 Identities = 143/188 (76%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 68274 TTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATG 68333 || || ||||| || || || || || | ||||| || | |||||| || ||||| || Sbjct 6022 TTCTGAATGTTGTAGTCAGACAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATC 6081 Query 68334 AGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCG 68393 || | || ||||| || |||||||| |||||||| |||||||| | |||||| ||| Sbjct 6082 AGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCG 6141 Query 68394 ATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAAT 68453 |||||||| | || || || || | ||| || || || ||||| |||||||||||||| Sbjct 6142 ATGGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTAAGGGTCTTGACGAAA 6201 Query 68454 ATCTGCAT 68461 |||||||| Sbjct 6202 ATCTGCAT 6209 >seq101 Length=72697 Score = 134 bits (148), Expect = 3e-26 Identities = 308/459 (67%), Gaps = 10/459 (2%) Strand=Plus/Plus Query 9939 ACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTCGAGG 9998 || || ||||||||||| || || || ||| |||||||| | |||||| |||| Sbjct 40699 ACACCAGCCTTCTGGTAGTCGCCGACACGCTTCTCAAAGAAGTTAGTCTTGCCGCCGAGC 40758 Query 9999 GAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCCAAACTGCTTGGGGTAACCGAGT 10058 || ||| |||||||||||| || ||||| ||| | || ||| || || || Sbjct 40759 GAGATGTTCTCCATGAAGTCGAATGGGTTTGTGGCACGGTACACCTTCTCGTTGCCTAGA 40818 Query 10059 GCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGAGTTCATG 10118 || | | ||||||||| || ||||| |||||||| ||||||| || | |||||| Sbjct 40819 GCAACAAGTAGGCGGTCAGCAACAAACTCAATGTACTGCTTCATCAGATCGGCGTTCATT 40878 Query 10119 CCAATCATGCGGCAGGGGATGGCGTCGCAAATGAAGTCCTTTTCGTTGGCGACCGCTTCC 10178 || | || | |||||| | || ||| | ||| ||||| ||| | |||| || || Sbjct 40879 CCTAGCAGACCGCAGGGCAGAGCCTCGGTCAGGAACTCCTTCTCGATCACGACGGCATCA 40938 Query 10179 TCGACGATGCTCTTTACCACGTC----AAGGGACAGCTTGTTCTCGAGCTTCGAATACAG 10234 || ||| | | || | ||| ||| | | |||||| || | ||| |||| Sbjct 40939 GTGATGATCTTTTGCACAAGGTCCTTGCTGGGGC-GGTTGTTC---AGATGCGAGAACAG 40994 Query 10235 GAGCTCTCCAAACTGCTGGTGGAGGCCCTCGTCGCGGCTGATGAACTCGTTGGACAAACC 10294 || |||| | ||| |||||||| || || || | |||||| || || Sbjct 40995 CAGGCAAGCAAAGTCGGTGTGCAGGCCCTCATCACGAGAAATAAGCTCGTTTGAGAAGGT 41054 Query 10295 CAGACCGGGCATGAGCCCCCGGTTGCGCAGCCAGAAAATGGCGCAGAACGACCCGGAGAA 10354 |||||| |||||||| || || |||||||||||||| |||| | ||| | || ||||| Sbjct 41055 CAGACCAGGCATGAGACCACGCTTGCGCAGCCAGAAGATGGAGGCGAAGGCGCCTGAGAA 41114 Query 10355 CAGAAGACCCTCCAC-GCACACCCAGGCGACGAGGCGCT 10392 | | ||||| || ||| | |||| || ||||||| Sbjct 41115 AAAGATGCCCTCGACAGCA-GCAAAGGCAACTAGGCGCT 41152 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921608425900360