Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20platani_20[genbank_20GCA_5F000978885.1_202015-04-23] 1,213 sequences; 29,181,415 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq338 122 7e-23 seq145 96.9 3e-15 >seq338 Length=64627 Score = 122 bits (134), Expect = 7e-23 Identities = 159/220 (72%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | || || || || | ||||||||||| ||||||||||| ||| Sbjct 52466 ATACCACCACGCAGACGCAGGACCAAGTGAAGAGTAGATTCTTTCTGAATGTTGTAGTCG 52525 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || || ||| ||||| || || || ||| ||||||||||||| ||||||||| Sbjct 52526 GAGAGGGTGCGGCCATCCTCAAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGA 52585 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || || || ||||| ||||| || | | |||| |||||||| ||| ||| Sbjct 52586 GGGATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTGTCGGAGGACTCG 52645 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAA 114372 || || | ||| | || || ||||| || || || |||| Sbjct 52646 ACTTCGAGGGTAATGGTCTTTCCGGTAAGGGTCTTGACAA 52685 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 114156 CCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTC 114215 || ||||| || | || ||| || || | ||||| || || || |||||||| ||| Sbjct 52013 CCACCACGCAGACGCAGAACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAG 52072 Query 114216 ATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGA 114275 | || || ||| ||||| || || || ||| ||||||||||||| || |||||||| Sbjct 52073 AGGGTGCGGCCATCCTCAAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGATCCGGAGGG 52132 Query 114276 ATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACG 114335 || || || ||||| ||||| ||| | | |||| ||| || | ||| ||||| Sbjct 52133 ATACCCTCCTTGTCCTGGATCTTGGATTTGACATTGTCAATGGTATCAGAGGACTCGACT 52192 Query 114336 TCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | ||| | || ||||| |||| || || || || || ||||| Sbjct 52193 TCGAGGGTAATGGTCTTGCCCGTCAAGGTCTTGACGAAGATTTGCAT 52239 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | || ||| || || | ||||||||||| ||||||||||| || Sbjct 52238 ATACCACCACGCAGACGCAGAACCAAGTGAAGAGTAGATTCTTTCTGAATGTTGTAGTCC 52297 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||||| ||| || || || || ||||| | ||||||||||| || ||||| Sbjct 52298 GAAAGGGTACGGCCATCCTCGAGCTGCTTTCCAGCAAAAATGAGACGCTGCTGATCCGGG 52357 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || || || || || ||||| || | | |||| ||| || | ||| ||| Sbjct 52358 GGGATACCCTCCTTATCCTGGATCTTGGACTTGACATTGTCAATGGTATCAGAGGACTCG 52417 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | ||| | || ||||| |||| || || || || || ||||| Sbjct 52418 ACTTCGAGGGTAATGGTCTTGCCCGTCAAGGTCTTGACGAAGATTTGCAT 52467 Score = 98.7 bits (108), Expect = 8e-16 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | |||| ||| | ||||| || || ||||||||||| ||| Sbjct 52750 ATACCACCACGCAGGCGGAGCACTAGATGGAGAGTAGACTCCTTCTGAATGTTGTAGTCG 52809 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || || ||| ||||| || || |||||| ||||||||||||| ||||||||| Sbjct 52810 GACAGGGTGCGGCCATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGA 52869 Query 114273 GGAATGCCTTCTTTGTC 114289 || || || || ||||| Sbjct 52870 GGGATACCCTCCTTGTC 52886 >seq145 Length=91869 Score = 96.9 bits (106), Expect = 3e-15 Identities = 134/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 114195 TTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATG 114254 || ||||||||||| || || || || ||| || || || || |||||| |||| Sbjct 6022 TTCTGAATGTTGTAGTCAGACAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATC 6081 Query 114255 AGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCA 114314 || ||||| |||||||| |||||||| || ||||| |||||| || | | || Sbjct 6082 AGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCG 6141 Query 114315 ACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 114374 | |||||| | ||| || || || | ||| | ||| || || || || || || || ||| Sbjct 6142 ATGGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTAAGGGTCTTGACGAAA 6201 Query 114375 ATCTGCAT 114382 |||||||| Sbjct 6202 ATCTGCAT 6209 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420128188969356