Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20platani_20[genbank_20GCA_5F000978885.1_202015-04-23] 1,213 sequences; 29,181,415 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq101 322 9e-83 seq411 145 1e-29 >seq101 Length=72697 Score = 322 bits (356), Expect = 9e-83 Identities = 602/867 (69%), Gaps = 42/867 (5%) Strand=Plus/Minus Query 42300 ATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTG 42359 |||||| |||||||||||||| || |||| |||||| || ||||||||||| || Sbjct 41555 ATCTGGCAGATGTACAAGAAGGCCGAGGCCTCCTTCTGGACTGCTGAGGAGATTGATCTC 41496 Query 42360 GCCAAGGACACGGCCGGCTGGGAGTCACTGTCTGAGAA----CGAAAAGTTTTTCCTCAA 42415 | ||||| || |||| | || |||||| | ||| ||| ||| || Sbjct 41495 TCTAAGGATCTCCACGACTGGAACA-ACCGTCTGAACAAAGACGAGCAGTACTTCATCTC 41437 Query 42416 AAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAG 42475 |||| || |||||||| || |||||||| ||||| ||||| || || || | | Sbjct 41436 CCACATTCTTGCCTTCTTTGCTGCCTCTGATGGCATCGTCAACGAAAATCTCGTTGAGCG 41377 Query 42476 GTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCAT 42535 ||| ||||||||| | ||||| |||||||||||||| |||||||| || Sbjct 41376 CTTCTCAGGCGAGGTGCAGATCCCCGAGGCCCGCTGCTTCTACGGTTTCCAGATCATGAT 41317 Query 42536 AGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGT 42595 || ||| | |||||||| ||| | ||| | |||| |||||| ||| ||| | Sbjct 41316 GGAAAACATCCACTCTGAAACCTACTCGCTGCTGATTGACACCTACATCAAGGAGCCC-T 41258 Query 42596 CG-AGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGG 42654 || | || | |||||||| ||||| || || || ||||||||| ||||| | Sbjct 41257 CGCAACGCACATACCTGTTCAATGCCATTGACACTATTCCCTGCATCCGCCGCAAGGCCG 41198 Query 42655 ACTGGGCGCTCAACTGGATCGAGAGTCCCGACG-CAACGTTCGGCGAGAGGCTGGTAGCC 42713 ||||||| || || |||||| | | | | | | ||||| | | || | || || ||| Sbjct 41197 ACTGGGCTCTGAAGTGGATC-ACCGACAAGGAGTCGACGTTTGCCCAGCGCCTAGTTGCC 41139 Query 42714 TTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCT---C 42770 ||| | || |||||||||||||| ||||| |||||||||||||||||||||||||| | Sbjct 41138 TTTGCTGCTGTCGAGGGCATCTTTTTCTCAGGCGCCTTCGCCTCCATCTTCTGGCTGCGC 41079 Query 42771 AAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAG 42830 |||| ||| || ||||| || || |||||||| ||||| || || | || ||| Sbjct 41078 AAGC--GTGGTCTC-ATGCCTGGTCTGACCTTCTCAAACGAGCTTATTTCTCGTGATGAG 41022 Query 42831 GGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAA--GCCCT 42888 || ||||| | |||||||| ||||| ||||||||| || || | |||| |||| Sbjct 41021 GGCCTGCACACCGACTTTGCTTGCCTGCTGTTCTCG---CATCT---GAACAACCGCCCC 40968 Query 42889 CG-AAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTC 42947 | ||||| | || | |||||||| || ||||| | |||||||||||||||||| Sbjct 40967 AGCAAGGACCTTGTGCAAAAGATCATCACTGATGCCGTCGTGATCGAGAAGGAGTTCCTG 40908 Query 42948 ACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATC 43007 || || | |||||| ||| | || |||||| ||| || ||| ||||||| Sbjct 40907 ACCGAGGCTCTGCCCTGCGGTCTGCTAGGAATGAACGCCGATCTGATGAAGCAGTACATT 40848 Query 43008 CAGTACGTCGCCGACCATCTCCTGTGCCAGATGGGTCTCAGCCGCCTCTACAACACG--C 43065 ||| || || |||| || || || | | ||| || || | | || | | Sbjct 40847 GAGTTTGTTGCTGACCGCCTACT-TG-----TTGCTCT-AG--GCAACGAGAAGGTGTAC 40797 Query 43066 CGTG-------CCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTT 43118 |||| ||| |||||||| ||||||||||||||| | | |||||||| ||||| Sbjct 40796 CGTGCCACAAACCCATTCGACTTCATGGAGAACATCTCGCTCGGCGGCAAGACTAACTTC 40737 Query 43119 TTCGAGAAGCGCGTCGCCGACTACCAG 43145 || |||||||| |||| |||||||||| Sbjct 40736 TTTGAGAAGCGTGTCGGCGACTACCAG 40710 >seq411 Length=11963 Score = 145 bits (160), Expect = 1e-29 Identities = 830/1320 (63%), Gaps = 45/1320 (3%) Strand=Plus/Minus Query 244090 GTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGG 244149 ||| || ||||| ||||| || | || |||||||||||||| | |||| || ||| Sbjct 8052 GTTGACGACCTGGAACTCGCCAGCAAGAACGCGGCGCTGGTAAATGTTGGATGTGTACGG 7993 Query 244150 CTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACAC 244209 |||| || ||| ||||||||| ||||||| |||||| || || |||||||| | || Sbjct 7992 TTCGAAGCACTCATTGTTGCCCAAAATCTGCGACGTGCTGGCTGTAGGCATGGGTGCAAC 7933 Query 244210 CAGCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGGAGTCTGAGCTCGTTCCAGTCCCA 244269 || ||| || | || || ||| || || | || |||||||||| Sbjct 7932 TAGAAGAGAATTGCGTACACCATGCTGCTTAATCTTCTCCTTTAGAGAAGTCCAGTCCCA 7873 Query 244270 CATGCC-CGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGC 244328 || | | | || ||| | | ||||||| |||||||||| | || | | Sbjct 7872 CAGGTCACTAGGAGTCA---CAT-------CCCACATATCAAACTGCAAGATGCCTTGGG 7823 Query 244329 TGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTTACAGCTCT 244388 ||| || ||||| || || | ||| | ||| || |||||| | || || | Sbjct 7822 AGACAGGAGAACCCTCATAAGTTGAGTAAGTACCCTCCGTCTGGGCGAT-TTCCAT-TGA 7765 Query 244389 CGTCG--AGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTT 244446 | | || ||||||| ||||||||| || || ||| |||||| | | ||| || | Sbjct 7764 AGCAGTTAGTGCGGCGTGGTAGATGGTTTCAAAAATCTGCTTGTTGAGCTGGCGTGCTTC 7705 Query 244447 GCCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGAT 244506 | | || || |||| | | ||| |||| ||||| ||||| || |||| Sbjct 7704 AGGGGATTCAAAAGGCATGCGGAGAGCAAGGAAAGCGTCAGCCAGGCCCTGTACACCGAC 7645 Query 244507 GCCGATGGGTCTGTGTCGCTTGTTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGTTGCC 244566 || ||||| | ||| ||| ||||| | ||||| | || ||||| || | Sbjct 7644 ACCAATGGGACGGTGGCGCATGTTGCTGTTGTGAGCTTCCTGGACAGGGTAGTGATTCAC 7585 Query 244567 GTCGATCACCTTGTTGAGGTTGCGGGTGATCATGCGGACGACGTCGGCCAGCAGCTGAAA 244626 ||||| | ||| |||||||| | | || ||| ||| ||| | ||| Sbjct 7584 ATCGATGATGCGGTTTAGGTTGCGAACAACAACTTGGGTGACTTCGTGTAGCTTTTTAAA 7525 Query 244627 GTCGTACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGACGCT 244686 ||| ||||| | ||| | | || ||| || || ||||||| Sbjct 7524 GTCATACTC------ACCCTTG----TTGTAGTCC--ACGAAGGAAGGAAGGGCGAGAGA 7477 Query 244687 GGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAG 244746 || |||||||| || || ||||| || | | ||||| || |||||| ||||| || Sbjct 7476 TGCTAGGTTGCACACAGCGACCTCATCAGGGGCACAGTACTCGATAATCTCAGTGCACAG 7417 Query 244747 GTT---ACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTC 244803 ||| ||||| ||||| || || | | |||||| |||| ||||||| ||| Sbjct 7416 GTTCGAACTGCGA---ATGGTACCTAGATTTTTCTGATTGCTCTTGCGGTTGCAGTGGTC 7360 Query 244804 CTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAG 244863 ||||||||||| || || || ||||| ||| || | || | | | ||| || Sbjct 7359 TTTGTAGAGCATAAAAGGGTTGCCAGTCTCAGTCTGAGCCTCCAGAATGGCATACCACAG 7300 Query 244864 GTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGC 244923 | | |||||||| | ||||| | |||||| |||||| ||||| || Sbjct 7299 TTTCTGGGCCTTGACAACCATGCGACCGCGGCCCTCCTTCTCGTACTTTTCATACAGAGC 7240 Query 244924 CTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGACT 244983 ||| ||||| ||| || || | | ||||||||| |||||||||||| | Sbjct 7239 CTCAAACTCTTCGCCATAGCAATCCGCCAAGCCGGGGCATTCATTGGGGCACATGAGAGT 7180 Query 244984 CCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAA 245043 ||| || | | || || | || |||||| | |||| |||||| |||||| ||| Sbjct 7179 CCAGTCCTCATTCTTCTCAACACGCTTCATGAACAAGTCGCAGATCCACAGGGCCAAGAA 7120 Query 245044 GAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAA 245103 ||||| | | | || ||| || |||||| | | || | || || || Sbjct 7119 TAGGTCACGAGCACGGACTTCTTCCTTTCCGTGGTTCTTGCGTAAGTCGAGGAACTCGAA 7060 Query 245104 GACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCC 245163 ||| || | ||||| ||||| | || | || | ||| || || |||||||| || || Sbjct 7059 GACATCAGCATGCCATGGCTCGAGATAAATGGCAAAGGCTCCAGGTCGCTTGTTTCCACC 7000 Query 245164 CTGGTCCACCATCCTCTCGAGCG----CGTTGAAGATGCGCAGGGTAGGCACTATGCCGT 245219 ||||| || | | || ||| |||||| | || || | || || ||||||| Sbjct 6999 CTGGT----CAACATAACGGGCGGTGTTGTTGAAAACACGTAGCATGGGAACGATGCCGT 6944 Query 245220 TAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCC--TGAGGTTGCTGATGGA 245277 | || ||||| ||||| ||||| | ||| || | | | | || || || Sbjct 6943 TCGAAGTACCGTTAGTGCCAGCAATGTAAGAGCCAGTGGCACGAATACGGTGAACATTGA 6884 Query 245278 CATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTAT 245337 | || | || || || |||||| || | ||| || |||||| ||| || || Sbjct 6883 GA--CCGATACCACCAGCCATCTTGGAAATCATGGCACAAGTCTTGAGGGTATCGTAAAT 6826 Query 245338 GCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGG 245397 |||||| |||||||| |||||||| || || || || || |||| ||| | || ||| Sbjct 6825 GCCCTCGATGCTGTCATCCTTCATGTCGACTAGGAAACATGAAGACAACTGAGCCTGGGG 6766 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944324881456880