Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20platani_20[genbank_20GCA_5F000978885.1_202015-04-23]
1,213 sequences; 29,181,415 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq338 120 7e-22
seq145 84.2 5e-11
>seq338
Length=64627
Score = 120 bits (132), Expect = 7e-22
Identities = 141/191 (74%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342
|| || ||||| || ||||||| ||| ||||| || || || | || ||||| ||||||
Sbjct 52049 TCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCAAGCTGCTTTCCGGCGAAG 52108
Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402
|| |||||||| ||| ||||| || || || |||||||| || | ||| || ||
Sbjct 52109 ATGAGACGCTGCTGATCCGGAGGGATACCCTCCTTGTCCTGGATCTTGGATTTGACATTG 52168
Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462
|| || | ||| || || |||||||| || || ||||| || |||| |||||||||
Sbjct 52169 TCAATGGTATCAGAGGACTCGACTTCGAGGGTAATGGTCTTGCCCGTCAAGGTCTTGACG 52228
Query 288463 AATATCTGCAT 288473
|| || |||||
Sbjct 52229 AAGATTTGCAT 52239
Score = 98.7 bits (108), Expect = 2e-15
Identities = 137/192 (71%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341
|||||| || || || ||||| | || || || || || || | || ||||| || ||
Sbjct 52276 TTCTTTCTGAATGTTGTAGTCCGAAAGGGTACGGCCATCCTCGAGCTGCTTTCCAGCAAA 52335
Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401
|| |||||||| ||| ||||| || || ||||||||||| || | || || ||
Sbjct 52336 AATGAGACGCTGCTGATCCGGGGGGATACCCTCCTTATCCTGGATCTTGGACTTGACATT 52395
Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461
|| || | ||| || || |||||||| || || ||||| || |||| ||||||||
Sbjct 52396 GTCAATGGTATCAGAGGACTCGACTTCGAGGGTAATGGTCTTGCCCGTCAAGGTCTTGAC 52455
Query 288462 GAATATCTGCAT 288473
||| || |||||
Sbjct 52456 GAAGATTTGCAT 52467
>seq145
Length=91869
Score = 84.2 bits (92), Expect = 5e-11
Identities = 134/191 (70%), Gaps = 6/191 (3%)
Strand=Plus/Plus
Query 288286 TTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATC 288345
|| || || || ||||| | || ||||| || || || | || || || |||||||||
Sbjct 6022 TTCTGAATGTTGTAGTCAGACAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATC 6081
Query 288346 AGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402
|| ||||| || || ||| || || || || ||||| || || | || || ||
Sbjct 6082 AGGCGCTGCTG---GTCCGGGGGAATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTG 6138
Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462
|| || | || || || || ||||| || |||||||| || || || |||||||||
Sbjct 6139 TCGATGGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTAAGGGTCTTGACG 6198
Query 288463 AATATCTGCAT 288473
|| ||||||||
Sbjct 6199 AAAATCTGCAT 6209
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1179636066327414
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |