Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20platani_20[genbank_20GCA_5F000978885.1_202015-04-23]
1,213 sequences; 29,181,415 total letters
Query= NC_009899.1
Length=344691
Score E
Sequences producing significant alignments: (Bits) Value
seq101 102 2e-16
seq311 93.3 9e-14
>seq101
Length=72697
Score = 102 bits (112), Expect = 2e-16
Identities = 172/249 (69%), Gaps = 0/249 (0%)
Strand=Plus/Minus
Query 243502 ATCATCACAGAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGG 243561
|||||||| || || || | | ||| ||||| ||| | ||| ||| | || ||| |
Sbjct 40946 ATCATCACTGATGCCGTCGTGATCGAGAAGGAGTTCCTGACCGAGGCTCTGCCCTGCGGT 40887
Query 243562 CTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATT 243621
|| | || |||||| | || || ||| |||||||| || || || || |||||| |
Sbjct 40886 CTGCTAGGAATGAACGCCGATCTGATGAAGCAGTACATTGAGTTTGTTGCTGACCGCCTA 40827
Query 243622 TTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAG 243681
| | || || || | ||||| |||||| ||| ||||| || | ||| ||||||
Sbjct 40826 CTTGTTGCTCTAGGCAACGAGAAGGTGTACCGTGCCACAAACCCATTCGACTTCATGGAG 40767
Query 243682 CTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGTGATTATCAACGC 243741
||| ||||| || || ||||||||||| || ||||||||| | || || ||
Sbjct 40766 AACATCTCGCTCGGCGGCAAGACTAACTTCTTTGAGAAGCGTGTCGGCGACTACCAGAAG 40707
Query 243742 CCTGGTGTG 243750
||||||||
Sbjct 40706 GCTGGTGTG 40698
>seq311
Length=88599
Score = 93.3 bits (102), Expect = 9e-14
Identities = 245/362 (68%), Gaps = 24/362 (7%)
Strand=Plus/Minus
Query 333641 ACCCTCGAGGAACCCGGGCTCGGGGAACTTCCACGTGGTCTTCGTCTCGGTAAGGGCGTA 333700
|||||| ||||| |||||||||||||| | || | ||| | | ||| ||||
Sbjct 83126 ACCCTCAAGGAAACCGGGCTCGGGGAAGGTGAACTCGATCTCGGAGGCACCAAGTTCGTA 83067
Query 333701 GTA--ACTCG-CTGATTCGGGACGCTTCTTCACGAACTCGGACAGATTTCCCTTGTACTT 333757
||| ||| | | || ||| | |||||| || ||||||| ||| || || |||
Sbjct 83066 GTATGACTTGGCCGA---GGGGCACTTCTTGACAAACTCGGCCAGGTTACCACGGTAACG 83010
Query 333758 CTTCAGCTTTAGGTTAGGTTCGTAATGGATAATAGAGGTG-CAAACAGCGTCGAGGAACC 333816
||| ||||| | | | ||||| |||| ||| | | || || || ||| ||||| |
Sbjct 83009 CTTAAGCTTGAAGC---GCTCGTAGTGGACAAT-GTGCTGGCAGACGTTGTCAAGGAAGC 82954
Query 333817 CGGAGTCGTGTGACACAATCACGCACGAAACGTCCTTAAGG----TTGATCAGGTATTCA 333872
| |||||||| || || || | | ||| || | |||| ||| |||||| ||
Sbjct 82953 CAGAGTCGTGAGAGACGATAATG---GAA--GTGC--AAGGAGAGTTGCACAGGTAGTCC 82901
Query 333873 ATCAGCCACCTCACGTTAGACACAGAAAGATGGTTGGTCGGCTCGTCAAGAAGTAGTAGC 333932
||||||| | ||||| |||| ||||||||||| |||||||||||||| || |
Sbjct 82900 TCCAGCCACTTGACGTTCTTCACATCCAGATGGTTGGTAGGCTCGTCAAGAAGCAGGATA 82841
Query 333933 TTTGCGTTCAGGAGCATTGCACGTGCA-AGAGCGAGTTTCATTTTCCACCCTCCTGAAAG 333991
| | | || | ||||| ||| ||||| || ||||| ||||| || || |||||
Sbjct 82840 TCAGGAGCCTCGAAAACGGCACG-GCACAGAGCCAGCTTCATCTTCCAACCACCAGAAAG 82782
Query 333992 AG 333993
||
Sbjct 82781 AG 82780
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1102862859521550
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |