Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20platani_20[genbank_20GCA_5F000978885.1_202015-04-23] 1,213 sequences; 29,181,415 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq101 102 2e-16 seq311 93.3 9e-14 >seq101 Length=72697 Score = 102 bits (112), Expect = 2e-16 Identities = 172/249 (69%), Gaps = 0/249 (0%) Strand=Plus/Minus Query 243502 ATCATCACAGAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGG 243561 |||||||| || || || | | ||| ||||| ||| | ||| ||| | || ||| | Sbjct 40946 ATCATCACTGATGCCGTCGTGATCGAGAAGGAGTTCCTGACCGAGGCTCTGCCCTGCGGT 40887 Query 243562 CTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATT 243621 || | || |||||| | || || ||| |||||||| || || || || |||||| | Sbjct 40886 CTGCTAGGAATGAACGCCGATCTGATGAAGCAGTACATTGAGTTTGTTGCTGACCGCCTA 40827 Query 243622 TTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAG 243681 | | || || || | ||||| |||||| ||| ||||| || | ||| |||||| Sbjct 40826 CTTGTTGCTCTAGGCAACGAGAAGGTGTACCGTGCCACAAACCCATTCGACTTCATGGAG 40767 Query 243682 CTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGTGATTATCAACGC 243741 ||| ||||| || || ||||||||||| || ||||||||| | || || || Sbjct 40766 AACATCTCGCTCGGCGGCAAGACTAACTTCTTTGAGAAGCGTGTCGGCGACTACCAGAAG 40707 Query 243742 CCTGGTGTG 243750 |||||||| Sbjct 40706 GCTGGTGTG 40698 >seq311 Length=88599 Score = 93.3 bits (102), Expect = 9e-14 Identities = 245/362 (68%), Gaps = 24/362 (7%) Strand=Plus/Minus Query 333641 ACCCTCGAGGAACCCGGGCTCGGGGAACTTCCACGTGGTCTTCGTCTCGGTAAGGGCGTA 333700 |||||| ||||| |||||||||||||| | || | ||| | | ||| |||| Sbjct 83126 ACCCTCAAGGAAACCGGGCTCGGGGAAGGTGAACTCGATCTCGGAGGCACCAAGTTCGTA 83067 Query 333701 GTA--ACTCG-CTGATTCGGGACGCTTCTTCACGAACTCGGACAGATTTCCCTTGTACTT 333757 ||| ||| | | || ||| | |||||| || ||||||| ||| || || ||| Sbjct 83066 GTATGACTTGGCCGA---GGGGCACTTCTTGACAAACTCGGCCAGGTTACCACGGTAACG 83010 Query 333758 CTTCAGCTTTAGGTTAGGTTCGTAATGGATAATAGAGGTG-CAAACAGCGTCGAGGAACC 333816 ||| ||||| | | | ||||| |||| ||| | | || || || ||| ||||| | Sbjct 83009 CTTAAGCTTGAAGC---GCTCGTAGTGGACAAT-GTGCTGGCAGACGTTGTCAAGGAAGC 82954 Query 333817 CGGAGTCGTGTGACACAATCACGCACGAAACGTCCTTAAGG----TTGATCAGGTATTCA 333872 | |||||||| || || || | | ||| || | |||| ||| |||||| || Sbjct 82953 CAGAGTCGTGAGAGACGATAATG---GAA--GTGC--AAGGAGAGTTGCACAGGTAGTCC 82901 Query 333873 ATCAGCCACCTCACGTTAGACACAGAAAGATGGTTGGTCGGCTCGTCAAGAAGTAGTAGC 333932 ||||||| | ||||| |||| ||||||||||| |||||||||||||| || | Sbjct 82900 TCCAGCCACTTGACGTTCTTCACATCCAGATGGTTGGTAGGCTCGTCAAGAAGCAGGATA 82841 Query 333933 TTTGCGTTCAGGAGCATTGCACGTGCA-AGAGCGAGTTTCATTTTCCACCCTCCTGAAAG 333991 | | | || | ||||| ||| ||||| || ||||| ||||| || || ||||| Sbjct 82840 TCAGGAGCCTCGAAAACGGCACG-GCACAGAGCCAGCTTCATCTTCCAACCACCAGAAAG 82782 Query 333992 AG 333993 || Sbjct 82781 AG 82780 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102862859521550