Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20platani_20[genbank_20GCA_5F000978885.1_202015-04-23]
1,213 sequences; 29,181,415 total letters
Query= NC_011183.1
Length=154641
Score E
Sequences producing significant alignments: (Bits) Value
seq411 149 6e-31
>seq411
Length=11963
Score = 149 bits (164), Expect = 6e-31
Identities = 482/739 (65%), Gaps = 16/739 (2%)
Strand=Plus/Plus
Query 93898 CCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGAT-GAC 93956
|| || || || || || || || || | | ||| ||||||| |||||||| | |||
Sbjct 6742 CCTACGCTCTTTAATGCCGGTACTCCCCAGGCTCAGTTGTCTTCATGTTTCCTAGTCGAC 6801
Query 93957 GAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCATCTC 94016
| |||| ||| |||| || |||| ||| | ||||||| ||||| | || ||
Sbjct 6802 -ATGAAGGATGACAGCATCGAGGGCATTTACGATACCCTCAAGACTTGTGCCATGATTTC 6860
Query 94017 AAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTA--CGTGCCAGGGGTTCCTAC 94074
|| || || || ||||| ||| ||| ||| |||| ||||||| || || |||
Sbjct 6861 CAAGATGGCTGGTGGTATCGGTCTCAATGTTCAC--CGTATTCGTGCCACTGGCTCTTAC 6918
Query 94075 ATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAAC 94134
|| || || || || || || |||||| |||| || ||||| || || |||||||||
Sbjct 6919 ATTGCTGGCACTAACGGTACTTCGAACGGCATCGTTCCCATGCTACGTGTTTTCAACAAC 6978
Query 94135 GCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCTC 94194
| || || || || ||||||||||| | | | || | || || | ||||||
Sbjct 6979 ACCGCCCGTTATGTTGACCAGGGTGGAAACAAGCGACCTGGAGCCTTTGCCATTTATCTC 7038
Query 94195 GAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGAT 94254
||||| ||||| || || || | ||| ||||| | || ||||||||||| || ||
Sbjct 7039 GAGCCATGGCATGCTGATGTCTTCGAGTTCCTCGACTTACGCAAGAACCACGGAAAGGAA 7098
Query 94255 CTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAACGC 94314
| | || | ||||| |||| || || ||| | ||| | || ||||| ||
Sbjct 7099 GAAGTCCGTGCTCGTGACCTATTCTTGGCCCTGTGGATCTGCGACTTGTTCATGAAGCGT 7158
Query 94315 GTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCCGAC 94374
|| ||||| || | ||||| ||| | || ||||||||||| ||||| || | ||
Sbjct 7159 GTTGAGAAGAATGAGGACTGGACTCTCATGTGCCCCAATGAATGCCCCGGCTTGGCGGA- 7217
Query 94375 GTTTGTGGATCGCG----TTTTGAAGACTTGTATGCTCGTTACGAATCGCAGGGCAAGGC 94430
||| || ||| ||||| | |||||| ||||| | ||||| |
Sbjct 7218 --TTG-CTATGGCGAAGAGTTTGAGGCTCTGTATGAAAAGTACGAGAAGGAGGGCCGCGG 7274
Query 94431 CAGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGAC 94490
| | |||| | | || ||| |||||| || || |||| | ||| |||||
Sbjct 7275 TCGCATGGTTGTCAAGGCCCAGAAACTGTGGTATGCCATTCTGGAGGCTCAGACTGAGAC 7334
Query 94491 GGGTACGCCCTACATCTTGTTCAAGGA-CTCTGTCAACGCCAAGTCCAACCAGCAGCACC 94549
|| | || | || | | ||| || | ||| |||| |||| ||| ||| | | |
Sbjct 7335 TGGCAACCCTTTTATGCTCTACAAAGACCACTG-CAACCGCAAGAGCAATCAGAAAAATC 7393
Query 94550 TCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGACG 94609
| || || || ||||| |||||||| |||||| ||||||| | | || || |
Sbjct 7394 TAGGTACCATTCGCAGTTCGAACCTGTGCACTGAGATTATCGAGTACTGTGCCCCTGATG 7453
Query 94610 AGATTGCTGTGTGTAACCT 94628
|| | |||||||| |||||
Sbjct 7454 AGGTCGCTGTGTGCAACCT 7472
Score = 122 bits (134), Expect = 9e-23
Identities = 198/280 (71%), Gaps = 4/280 (1%)
Strand=Plus/Plus
Query 95095 CTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTGGCAACAACGAGTCG 95154
|| || || || |||||||| || ||| |||| ||||||| | |||||||| ||||
Sbjct 7927 CTTCTAGTTGCACCCATGCCTACAGCCAGCACGTCGCAGATTTTGGGCAACAATGAGTGC 7986
Query 95155 TTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCCGGGGAATTCCCCGTC 95214
|||||||| | ||| |||||| | ||| | | || || || || || || |||| |||
Sbjct 7987 TTCGAACCGTACACATCCAACATTTACCAGCGCCGCGTTCTTGCTGGCGAGTTCCAGGTC 8046
Query 95215 ATCAACAAGCACCTCCTACGGGACCT-GACGTCTCTGGGTGTGTGGGGTGACAAGGTCAA 95273
||||| || ||||| ||||| | || ||| ||| | ||| |||||| | ||
Sbjct 8047 GTCAACCCCTGGCTTCTACGTGACCTAGTCGA-TCTTGGTTTATGGTCTGACAACATGAA 8105
Query 95274 GAACCA-ACTGCTACGCGCCAACGGCTCCGTCCAGAACATCCCGCAAATACCGGAGGACA 95332
||| | | | | || | ||| |||||| ||||||||||| | || || | || |
Sbjct 8106 GAATCGCATTATTGCG-GACAATGGCTCCATCCAGAACATCTCTAGCATTCCTGCTGATA 8164
Query 95333 TCAAGGCGCTCTACAAGACCGTGTGGGAGATCCCGCAGCG 95372
| || || || ||||||||||| |||||||| | |||||
Sbjct 8165 TTAAAGCTCTGTACAAGACCGTTTGGGAGATTTCCCAGCG 8204
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 494715698759480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |