Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratocystis_20platani_20[genbank_20GCA_5F000978885.1_202015-04-23] 1,213 sequences; 29,181,415 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq101 100 3e-16 seq338 95.1 1e-14 seq145 89.7 5e-13 >seq101 Length=72697 Score = 100 bits (110), Expect = 3e-16 Identities = 331/505 (66%), Gaps = 25/505 (5%) Strand=Plus/Minus Query 52344 AAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCGACACCG---CCACGCTGGCCGAGCGC 52400 ||||| | ||||| ||||||||||| | ||||| | | ||| | ||| ||||| Sbjct 41204 AAGGCCGACTGGGCTCTGAAGTGGATC---ACCGACAAGGAGTCGACGTTTGCCCAGCGC 41148 Query 52401 ATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCTTTGCCGCCATCTTT 52460 | || ||||| || ||||||||| | ||||| || ||| ||| ||| ||||||| Sbjct 41147 CTAGTTGCCTTTGCTGCTGTCGAGGGCATCTTTTTCTCAGGCGCCTTCGCCTCCATCTTC 41088 Query 52461 TACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACGAGTTGATATCGCGC 52520 | | | | || | ||||| || ||||| ||| |||||| | || || || Sbjct 41087 TGGCTGCGCAAGCGTGGTCTCATGCCTGGTCTGACCTTCTCAAACGAGCTTATTTCTCGT 41028 Query 52521 GACGAAGGACTGCACACGGACTTTGCGTGCCT-CTACTACAAGACGCGCGTGACCGAAAA 52579 || || || |||||||| |||||||| ||||| || | | ||| | | ||| | Sbjct 41027 GATGAGGGCCTGCACACCGACTTTGCTTGCCTGCTGTT------CTCGCAT--CTGAACA 40976 Query 52580 ATTGGATTCGGACACGATCCTGAGC-----ATGTTCAAGGAGGCGGTGGCTATCGAAAAG 52634 | | | | | || | || || || ||| || || || | ||||| ||| Sbjct 40975 A-CCGCCCCAGCAAGGACCTTGTGCAAAAGATCATCACTGATGCCGTCGTGATCGAGAAG 40917 Query 52635 GAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACGCGCAGTCCATGTGC 52694 ||||| | || | || ||||| || ||||| || |||||||| | ||| Sbjct 40916 GAGTTCCTGACCGAGGCTCTGCCCTGCGGTCTGCTAGGAATGAACGCCGATCTGATGAAG 40857 Query 52695 GAGTACATCGAGTTTGTGGCGGATCGTCT-GTTGGTGCAGCTCGGGCAGCCA-AAGTACT 52752 ||||||| |||||||| || || || || ||| ||| || |||| | | ||| | Sbjct 40856 CAGTACATTGAGTTTGTTGCTGACCGCCTACTTGTTGC-TCT-AGGCAACGAGAAGGTGT 40799 Query 52753 TCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGGCAAGACCAACT 52812 | || || || || || || ||| | ||||| ||||| | |||||||| |||| Sbjct 40798 ACCGTGCCACAAACCCATTCGACTTCATGGAGAACATCTCGCTCGGCGGCAAGACTAACT 40739 Query 52813 TTTTCGAGAAGCGAGTCGGCGAGTA 52837 | || |||||||| |||||||| || Sbjct 40738 TCTTTGAGAAGCGTGTCGGCGACTA 40714 >seq338 Length=64627 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || |||| ||||| ||| || || | | |||||||| || |||||||||||| Sbjct 52012 GCCACCACGCAGACGCAGAACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGGA 52071 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | || || ||||| || || || |||| |||| |||||||| || |||||||| Sbjct 52072 GAGGGTGCGGCCATCCTCAAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGATCCGGAGG 52131 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCA 138565 ||||| || ||||| ||| || ||| | |||| || | ||| || | ||||| | Sbjct 52132 GATACCCTCCTTGTCCTGGATCTTGGATTTGACATTG-TCAATGGTATCAGAGGACTCGA 52190 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 | |||| || | || || || |||| || || || || || ||||| Sbjct 52191 CTTCGAGGGTAATGGTCTTGCCCGTCAAGGTCTTGACGAAGATTTGCAT 52239 Score = 89.7 bits (98), Expect = 5e-13 Identities = 146/207 (71%), Gaps = 4/207 (2%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| || | |||| ||| | | |||||||| ||||||||||||||| | Sbjct 52753 CCACCACGCAGGCGGAGCACTAGATGGAGAGTAGACTCCTTCTGAATGTTGTAGTCGGAC 52812 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || ||||| || || || || | |||| |||||||| ||||||||||| Sbjct 52813 AGGGTGCGGCCATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGG 52872 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCA 138565 ||||| || ||||| || | || | |||| ||| || | || || | ||||||| Sbjct 52873 ATACCCTCCTTGTC-CTGGATCTTAGACTTAACGTTG-TCAATAGTATCCGAAGACTCCA 52930 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCA 138592 |||||| || | || || ||||||| Sbjct 52931 CCTCGAGGGTGATGGTCTTGCCAGTCA 52957 Score = 86.0 bits (94), Expect = 6e-12 Identities = 149/217 (69%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| ||||| || || || | | || || || ||||||||||||||| Sbjct 52469 CCACCACGCAGACGCAGGACCAAGTGAAGAGTAGATTCTTTCTGAATGTTGTAGTCGGAG 52528 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || ||||| || || || |||| |||| |||||||| ||||||||||| Sbjct 52529 AGGGTGCGGCCATCCTCAAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAGGG 52588 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 ||||| || ||||| ||| || || | | || | |||||||| ||||| || Sbjct 52589 ATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTGTCGGAGGACTCGACT 52648 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAA 138604 |||| || | || || || || || || || |||| Sbjct 52649 TCGAGGGTAATGGTCTTTCCGGTAAGGGTCTTGACAA 52685 >seq145 Length=91869 Score = 89.7 bits (98), Expect = 5e-13 Identities = 137/192 (71%), Gaps = 4/192 (2%) Strand=Plus/Plus Query 138425 CCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGA 138484 |||| |||||||||||||| || || || ||||| || || || || | ||| Sbjct 6020 CCTTCTGAATGTTGTAGTCAGACAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGA 6079 Query 138485 TTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG--TTTTAATTG 138542 | || ||||| |||||||| || || || || ||||| ||| | || | || |||| Sbjct 6080 TCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTC-CTGAATCTTGGACTTGACATTG 6138 Query 138543 TTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTAC 138602 || | |||||| | ||||| ||||||| || | ||| ||||| || || || || || Sbjct 6139 -TCGATGGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTAAGGGTCTTGAC 6197 Query 138603 AAAAATCTGCAT 138614 ||||||||||| Sbjct 6198 GAAAATCTGCAT 6209 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496254875421360