Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20platani_20[genbank_20GCA_5F000978885.1_202015-04-23]
1,213 sequences; 29,181,415 total letters
Query= NC_011616.1
Length=148634
Score E
Sequences producing significant alignments: (Bits) Value
seq101 125 7e-24
seq338 120 3e-22
seq64 111 1e-19
seq145 109 5e-19
>seq101
Length=72697
Score = 125 bits (138), Expect = 7e-24
Identities = 162/224 (72%), Gaps = 0/224 (0%)
Strand=Plus/Minus
Query 47355 GAAGCCGTCGCCATTGAGATGGAGTTTTTCGCCGAGGCTCTGCCCGAATCTTTAGTGGGA 47414
|| ||||||| || |||| |||||| | |||||||||||||| | | | |||
Sbjct 40937 GATGCCGTCGTGATCGAGAAGGAGTTCCTGACCGAGGCTCTGCCCTGCGGTCTGCTAGGA 40878
Query 47415 ATGAACGCGGAGATGATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTTCAG 47474
|||||||| || |||||| ||||||| || ||||| || |||||||| || |||
Sbjct 40877 ATGAACGCCGATCTGATGAAGCAGTACATTGAGTTTGTTGCTGACCGCCTACTTGTTGCT 40818
Query 47475 CTAAAGTATCCCAAGATTTACCACACCGAGAATCCATTCGAGTTTATGAACAACATTTCG 47534
||| | ||| | |||| || || |||||||| || ||| | ||||| |||
Sbjct 40817 CTAGGCAACGAGAAGGTGTACCGTGCCACAAACCCATTCGACTTCATGGAGAACATCTCG 40758
Query 47535 CTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGGCGAATA 47578
|||| |||||||| ||||| || |||||||| |||||||| ||
Sbjct 40757 CTCGGCGGCAAGACTAACTTCTTTGAGAAGCGTGTCGGCGACTA 40714
>seq338
Length=64627
Score = 120 bits (132), Expect = 3e-22
Identities = 159/218 (73%), Gaps = 2/218 (1%)
Strand=Plus/Plus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
||||| || | |||| ||||| || | ||||| ||||| ||||| ||||| |||
Sbjct 52469 CCACCACGCAGACGCAGGACCAAGTGAAGAGTAGATTCTTTCTGAATGTTGTAGTCGGAG 52528
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| ||||| ||| || ||||| ||||| ||| |||| | |||||||| || |||||
Sbjct 52529 AGGGTGCGGCCATCCTCAAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAGGG 52588
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065
|| |||||||||||| ||| || ||||| |||| || | |||||| | ||||||
Sbjct 52589 ATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTG-TCAATGGTGTCGGAGGACTCGAC 52647
Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAA 127103
||||| ||| | || || ||||| || || || ||||
Sbjct 52648 TTCGAGGGTAATGGTCTTTCCGGTAAGGGTCTTGACAA 52685
Score = 113 bits (124), Expect = 4e-20
Identities = 161/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
||||| || | |||| ||||| || | |||||||| || || || ||||| |||
Sbjct 52013 CCACCACGCAGACGCAGAACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAG 52072
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| ||||| ||| || ||||| ||||| ||| |||| | ||||||||||| |||||
Sbjct 52073 AGGGTGCGGCCATCCTCAAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGATCCGGAGGG 52132
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066
|| |||||||||||| ||| || |||| | || | ||| || | |||||||
Sbjct 52133 ATACCCTCCTTGTCCTGGATCTTGGATTTGACATTGTCAATGGTATCAGAGGACTCGACT 52192
Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|||| ||| | || ||||| |||| || || || || || |||||
Sbjct 52193 TCGAGGGTAATGGTCTTGCCCGTCAAGGTCTTGACGAAGATTTGCAT 52239
Score = 107 bits (118), Expect = 2e-18
Identities = 149/206 (72%), Gaps = 2/206 (1%)
Strand=Plus/Plus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
||||| || | || | ||| | ||| | |||||||| || ||||| ||||| ||| |
Sbjct 52753 CCACCACGCAGGCGGAGCACTAGATGGAGAGTAGACTCCTTCTGAATGTTGTAGTCGGAC 52812
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| ||||| ||| || ||||| ||||||||| |||| | |||||||| || |||||
Sbjct 52813 AGGGTGCGGCCATCCTCAAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGG 52872
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065
|| |||||||||||| ||| || ||| | |||| || | || |||| | ||| ||
Sbjct 52873 ATACCCTCCTTGTCCTGGATCTTAGACTTAACGTTG-TCAATAGTATCCGAAGACTCCAC 52931
Query 127066 TTCGACGGTCACCGTTTTGCCGGTCA 127091
|||| ||| | || ||||| ||||
Sbjct 52932 CTCGAGGGTGATGGTCTTGCCAGTCA 52957
Score = 98.7 bits (108), Expect = 9e-16
Identities = 158/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
||||| || | |||| ||||| || | ||||| ||||| ||||| ||||| ||
Sbjct 52241 CCACCACGCAGACGCAGAACCAAGTGAAGAGTAGATTCTTTCTGAATGTTGTAGTCCGAA 52300
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| || || ||| || ||||| |||||||| | || | ||||||||||| || ||
Sbjct 52301 AGGGTACGGCCATCCTCGAGCTGCTTTCCAGCAAAAATGAGACGCTGCTGATCCGGGGGG 52360
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066
|| |||||||| ||| ||| || ||||| | || | ||| || | |||||||
Sbjct 52361 ATACCCTCCTTATCCTGGATCTTGGACTTGACATTGTCAATGGTATCAGAGGACTCGACT 52420
Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|||| ||| | || ||||| |||| || || || || || |||||
Sbjct 52421 TCGAGGGTAATGGTCTTGCCCGTCAAGGTCTTGACGAAGATTTGCAT 52467
>seq64
Length=146407
Score = 111 bits (122), Expect = 1e-19
Identities = 140/190 (74%), Gaps = 2/190 (1%)
Strand=Plus/Minus
Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976
|| ||||| || || || ||||| ||| || ||||| ||| || ||||| || |||
Sbjct 70934 GTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTCAAGCTGCTTACCA 70875
Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036
|| ||||||| |||||||| || || || ||||||||||||||| ||| || ||||
Sbjct 70874 GCAAAGATCAAGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTG 70815
Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095
| |||| |||| ||||||| | |||||| || | ||| | || || || ||||| ||
Sbjct 70814 ACGTTG-TCGATCGTGTCCGAAGACTCGACCTCCAGGGTAATGGTCTTACCCGTCAGGGT 70756
Query 127096 TTTTACAAAA 127105
|| || |||
Sbjct 70755 CTTGACGAAA 70746
>seq145
Length=91869
Score = 109 bits (120), Expect = 5e-19
Identities = 137/188 (73%), Gaps = 0/188 (0%)
Strand=Plus/Plus
Query 126926 TTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985
|| ||||| ||||| || || ||||| ||| || ||||| || |||||| |||||
Sbjct 6022 TTCTGAATGTTGTAGTCAGACAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATC 6081
Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCG 127045
| |||||||| || || || ||||||||||||||| || || ||||| | |||
Sbjct 6082 AGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCG 6141
Query 127046 ACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 127105
| |||||||| ||| || |||| ||| | ||| || || || || || || || |||
Sbjct 6142 ATGGTGTCCGAGGACTCAACCTCGAGGGTAATCGTCTTACCCGTAAGGGTCTTGACGAAA 6201
Query 127106 ATCTGCAT 127113
||||||||
Sbjct 6202 ATCTGCAT 6209
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 475493590219120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |