Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratocystis_20platani_20[genbank_20GCA_5F000978885.1_202015-04-23]
1,213 sequences; 29,181,415 total letters
Query= NC_012639.1
Length=141291
Score E
Sequences producing significant alignments: (Bits) Value
seq145 89.7 5e-13
seq338 82.4 7e-11
>seq145
Length=91869
Score = 89.7 bits (98), Expect = 5e-13
Identities = 114/157 (73%), Gaps = 0/157 (0%)
Strand=Plus/Plus
Query 45185 ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTT 45244
||| |||| || || || ||| | |||| || ||||||||||| |||||||| || ||
Sbjct 6054 ATCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTT 6113
Query 45245 ATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAAC 45304
|| ||||| || |||| || | |||||| || ||||| || ||||| ||||
Sbjct 6114 GTCCTGAATCTTGGACTTGACATTGTCGATGGTGTCCGAGGACTCAACCTCGAGGGTAAT 6173
Query 45305 CGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341
||| || || || || || || || ||||| ||||||
Sbjct 6174 CGTCTTACCCGTAAGGGTCTTGACGAAAATCTGCATC 6210
>seq338
Length=64627
Score = 82.4 bits (90), Expect = 7e-11
Identities = 136/194 (70%), Gaps = 2/194 (1%)
Strand=Plus/Plus
Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197
|| || || ||||| || || || || || ||| || ||| ||| || | ||
Sbjct 52493 TGAAGAGTAGATTCTTTCTGAATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCAAGCTGC 52552
Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257
||||| ||| | || | || ||||||||||| || || || || || || || || ||
Sbjct 52553 TTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAGGGATACCCTCCTTGTCCTGGATCTTG 52612
Query 45258 TGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316
|||| || | || | ||||||||| |||||||||||||| |||| || || |||||
Sbjct 52613 GACTTGA-CGTTGTCAATGGTGTCGGAGGACTCGACTTCGAGGGTAATGGTCTTTCCGGT 52671
Query 45317 TAGAGTTTTTACAA 45330
|| || || ||||
Sbjct 52672 AAGGGTCTTGACAA 52685
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 451996346501480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |